These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1803 fasta sequence [CCCGTGCCGCGTCGGAAGCTTCTGGATCCCAGATCTCGGCCAAAAACCCTAACCCTCTCGAAGCTTCTAGAATCACGCCCCCTCCCCCCTCCCCCCTCCCCTCCCCATGGACGGGCTCGCGGCGCCCTCGCCGTCCCACTCCGGCGCGACGTCCGGCGGCGGCGCCTCCCACCGCAAGCGGAAGCTCCCGCCGTCGTCCCTCTCCGACGCCACCGCCGACGAGGACGACGACACCACCGCGCCGTCGTCGCCGTCCACCTCCCCGTCGTCGCCCTCACGCCCGTCCTCCCCGTCCTCCTCCCACTCCGACGATGACGACGACGACTCCCTCCACACCTTCACCGCCGCCCGCCTCGACGGCGCGCCCCCGTCCTCATCCGGCCGCCCGCCGAAGCCCGAGTCCTCGACCGTGTCTGCCGCCGCCGCGGCCGCGGCTGCAGCGGCCGCTCCCAAGCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAAGCGTGAGGAAGAAGCAGGGAGGCTGAAATTTCTATGCTATTCTAATGATGGAGTTGATGAACATATGATTTGGTTGGTAGGCTTGAAGAATATCTTTGCTCGGCAGCTTCCTAACATGCCCAAAGAGTACATTGTCCGTCTTGTTATGGATAGAACTCACAAATCAATGATGGTTATCAGGAATAATATTGTTGTAGGAGGCATTACTTACCGGCCTTATACAAGCCAGAAGTTTGGAGAAATAGCATTTTGTGCAATTACAGCTGATGAGCAAGTTAAAGGCTATGGGACACGGTTAATGAATCACCTGAAGCAACATGCCCGAGATGCTGATGGGCTCACTCATTTCTTAACTTATGCAGATAACAATGCCGTTGGCTATTTTGTAAAGCAGGGTTTCACAAAGGAGATCACATTGGACAAAGAAAGATGGCAAGGGTACATTAAAGACTATGATGGAGGAATATTGATGGAGTGCAGAATTGATCAAAAGTTGCCATATGTTGATCTGGCAACGATGATTAGGCGTCAAAGACAGGCAATTGATGAGAAAATCAGAGAGCTTTCAAACTGCCATATTGTTTATTCTGGAATTGACTTCCAAAAGAAAGAAGCTGGTATTCCAAGAAGAACGATGAAACCAGAAGACATCCAAGGCTTGAGGGAAGCTGGGTGGACGCCAGATCAGTGGGGGCATTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAATCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGAGCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTTGAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGTAGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTATTACAAGTGTGCCTCACGGCTCGAGAGCTTCTTCTCAAACAAAGTAGCATCTCAGCTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAATTGTCGTTGTAAAATTGTTGTAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTAACGTAGCAACTTCTGATGAGAGGTAATCCTGATGGCGTGTTTAATNTNTCACCAAAAAAAAAAAAAAA] [+] EMBL AK111779 [CCCGTGCCGCGTCGGAAGCTTCTGGATCCCAGATCTCGGCCAAAAACCCTAACCCTCTCGAAGCTTCTAGAATCACGCCCCCTCCCCCCTCCCCCCTCCCCTCCCCATGGACGGGCTCGCGGCGCCCTCGCCGTCCCACTCCGGCGCGACGTCCGGCGGCGGCGCCTCCCACCGCAAGCGGAAGCTCCCGCCGTCGTCCCTCTCCGACGCCACCGCCGACGAGGACGACGACACCACCGCGCCGTCGTCGCCGTCCACCTCCCCGTCGTCGCCCTCACGCCCGTCCTCCCCGTCCTCCTCCCACTCCGACGATGACGACGACGACTCCCTCCACACCTTCACCGCCGCCCGCCTCGACGGCGCGCCCCCGTCCTCATCCGGCCGCCCGCCGAAGCCCGAGTCCTCGACCGTGTCTGCCGCCGCCGCGGCCGCGGCTGCAGCGGCCGCTCCCAAGCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAAGCGTGAGGAAGAAGCAGGGAGGCTGAAATTTCTATGCTATTCTAATGATGGAGTTGATGAACATATGATTTGGTTGGTAGGCTTGAAGAATATCTTTGCTCGGCAGCTTCCTAACATGCCCAAAGAGTACATTGTCCGTCTTGTTATGGATAGAACTCACAAATCAATGATGGTTATCAGGAATAATATTGTTGTAGGAGGCATTACTTACCGGCCTTATACAAGCCAGAAGTTTGGAGAAATAGCATTTTGTGCAATTACAGCTGATGAGCAAGTTAAAGGCTATGGGACACGGTTAATGAATCACCTGAAGCAACATGCCCGAGATGCTGATGGGCTCACTCATTTCTTAACTTATGCAGATAACAATGCCGTTGGCTATTTTGTAAAGCAGGGTTTCACAAAGGAGATCACATTGGACAAAGAAAGATGGCAAGGGTACATTAAAGACTATGATGGAGGAATATTGATGGAGTGCAGAATTGATCAAAAGTTGCCATATGTTGATCTGGCAACGATGATTAGGCGTCAAAGACAGGCAATTGATGAGAAAATCAGAGAGCTTTCAAACTGCCATATTGTTTATTCTGGAATTGACTTCCAAAAGAAAGAAGCTGGTATTCCAAGAAGAACGATGAAACCAGAAGACATCCAAGGCTTGAGGGAAGCTGGGTGGACGCCAGATCAGTGGGGGCATTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAATCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGAGCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTTGAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGTAGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTATTACAAGTGTGCCTCACGGCTCGAGAGCTTCTTCTCAAACAAAGTAGCATCTCAGCTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAA ] [+] EMBL CA753314 [ tGATCAGTGGGGGCATTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAATCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGAGCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTTGAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGTAGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTATTACAAGTGTGCCTCACGGCTCGAGAGCTTCTTCTCAAACAAAGTAGCATCTCAGCTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAATTGTCGTTGTAAAATTGTTGTAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTAACGTAGCAACTTCTGATGAGAGGTAATCCTGATGGCGTGTTTAATNTNTCACCAAAAAAAAAAAAAAA] consensusID : consensus_7480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAACGCGTGACGGACACGACACGCACGGGACGGCTTGACACACTTTCTACTGCTACTTCTACACTGACTTGGACGTTGACTGACACCATACTGACTTTGGTTGGTACGGGCTTGACACGACACTACTCTTTGGCTCGGCACGCTTCCTACACATGCCCAACAGACGTACCACTTGTTCCGTCTTGTTACTGGGACTACGACACCTCCACCAACACTTCACACTGACTGGGTTTACTCACGGACACTACACTACTTTTGTCTGTACGGACGGGCACTTTACCTATACCCGGCGCTTACTACCAACGCCACGACACGTCTGGGACGACACACTACG] [+] EMBL BU666965 [GCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAACGCGTGACGGACACGACACGCACGGGACGGCTTGACACACTTTCTACTGCTACTTCTACACTGACTTGGACGTTGACTGACACCATACTGACTTTGGTTGGTACGGGCTTGACACGACACTACTCTTTGGCTCGGCACGCTTCCTACACATGCCCAACAGACGTACCACTTGTTCCGTCTTGTTACTGGGACTACGACACCTCCACCAACACTTCACACTGACTGGGTTTACTCACGGACACTACACTACTTTTGTCTGTACGGACGGGCACTTTACCTATACCCGGCGCTTACTACCAACGCCACGACACGTCTGGGACGACACACTACG] consensusID : consensus_7480#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [GAGCCGTTGAACGNGCCAACTCGGCCCAGTNGATCACAACTTGTCCAAGCCTCAACGAAGAACTGACATGGTCTATGGTACATCTGATATAGTCAATTGTTGTTGTAAAATTGTTATAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTTAACGTAGCAACTTCTGATGAGAGGTAATTCTGATGGCGTGTTTAATTTTTCACCAATTTAATTGCTTACAT] [+] EMBL AA754472 [GAGCCGTTGAACGNGCCAACTCGGCCCAGTNGATCACAACTTGTCCAAGCCTCAACGAAGAACTGACATGGTCTATGGTACATCTGATATAGTCAATTGTTGTTGTAAAATTGTTATAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTTAACGTAGCAACTTCTGATGAGAGGTAATTCTGATGGCGTGTTTAATTTTTCACCAATTTAATTGCTTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7480#0 CCCGTGCCGCGTCGGAAGCTTCTGGATCCCAGATCTCGGCCAAAAACCCTAACCCTCTCG 60 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 AAGCTTCTAGAATCACGCCCCCTCCCCCCTCCCCCCTCCCCTCCCCATGGACGGGCTCGC 120 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GGCGCCCTCGCCGTCCCACTCCGGCGCGACGTCCGGCGGCGGCGCCTCCCACCGCAAGCG 180 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GAAGCTCCCGCCGTCGTCCCTCTCCGACGCCACCGCCGACGAGGACGACGACACCACCGC 240 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GCCGTCGTCGCCGTCCACCTCCCCGTCGTCGCCCTCACGCCCGTCCTCCCCGTCCTCCTC 300 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 CCACTCCGACGATGACGACGACGACTCCCTCCACACCTTCACCGCCGCCCGCCTCGACGG 360 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 CGCGCCCCCGTCCTCATCCGGCCGCCCGCCGAAGCCCGAGTCCTCGACCGTGTCTGCCGC 420 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 CGCCGCGGCCGCGGCTGCAGCGGCCGCTCCCAAGCCCGATTCCGCTTCCGCTGCCGCCGG 480 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 CGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTA 540 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TAGCGCTCGAGAGGAGGGCCTCAAGCGTGAGGAAGAAGCAGGGAGGCTGAAATTTCTATG 600 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 CTATTCTAATGATGGAGTTGATGAACATATGATTTGGTTGGTAGGCTTGAAGAATATCTT 660 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TGCTCGGCAGCTTCCTAACATGCCCAAAGAGTACATTGTCCGTCTTGTTATGGATAGAAC 720 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TCACAAATCAATGATGGTTATCAGGAATAATATTGTTGTAGGAGGCATTACTTACCGGCC 780 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TTATACAAGCCAGAAGTTTGGAGAAATAGCATTTTGTGCAATTACAGCTGATGAGCAAGT 840 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TAAAGGCTATGGGACACGGTTAATGAATCACCTGAAGCAACATGCCCGAGATGCTGATGG 900 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GCTCACTCATTTCTTAACTTATGCAGATAACAATGCCGTTGGCTATTTTGTAAAGCAGGG 960 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TTTCACAAAGGAGATCACATTGGACAAAGAAAGATGGCAAGGGTACATTAAAGACTATGA 1020 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TGGAGGAATATTGATGGAGTGCAGAATTGATCAAAAGTTGCCATATGTTGATCTGGCAAC 1080 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GATGATTAGGCGTCAAAGACAGGCAATTGATGAGAAAATCAGAGAGCTTTCAAACTGCCA 1140 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TATTGTTTATTCTGGAATTGACTTCCAAAAGAAAGAAGCTGGTATTCCAAGAAGAACGAT 1200 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GAAACCAGAAGACATCCAAGGCTTGAGGGAAGCTGGGTGGACGCCAGATCAGTGGGGGCA 1260 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAA 1320 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 TCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGA 1380 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTT 1440 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 ------------------------------------------------------------ consensus_7480#0 GAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGT 1500 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 --------------------------------GCCCGATTCCGCTTCCGCTGCCGCCGGC 28 consensus_7480#0 AGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTA 1560 consensus_7480#2 ------------------------------------------------------------ consensus_7480#1 GACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTAT 88 consensus_7480#0 TTACAAGTGTGCCTCACGGCTCGAGAGCTTCT-TCTCAAACAAAGTAGCATCTCA----G 1615 consensus_7480#2 --------------GAGCCGTTGAACGNGCCA-ACTCGGCCCA-GTNG-ATCACA----A 39 consensus_7480#1 AGCGCTCGAGAGGAGGGCCTCAACGCGTGACGGACACGACACGCACGGGACGGCTTGACA 148 * * * * * * * consensus_7480#0 CTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAATTG 1675 consensus_7480#2 CTTGTCCAAGCCTCAACGAAGAACTGACATGGTCTATGGTACATCTGATATAGTCAATTG 99 consensus_7480#1 CACTTTCTACTGCTACTTCTACACTGACTTGGACGTTGACTGACACCATACTGACTTTGG 208 * * * * ****** *** * ** * *** * * * * consensus_7480#0 TCGTTGTAAAATTGTTGTAGCTCTCGCCCCC--CTTGTTGTGCTTTCCAGCTTTGTAGTT 1733 consensus_7480#2 TTGTTGTAAAATTGTTATAGCTCTCGCCCCC--CTTGTTGTGCTTTCCAGCTTTGTAGTT 157 consensus_7480#1 TTGGTACGGGCTTGACACGACACTACTCTTTGGCTCGGCACGCTTCCTACACATGCCCAA 268 * * * *** * ** * ** * **** * * ** consensus_7480#0 T-AACGTAGCAACT------TCTGATGAGAGGTAATCCTGATGGCGTGTTTAATNTNTCA 1786 consensus_7480#2 TTAACGTAGCAACT------TCTGATGAGAGGTAATTCTGATGGCGTGTTTAATTTTTCA 211 consensus_7480#1 CAGACGTACCACTTGTTCCGTCTTGTTACTGG-GACTACGACACCTCCACCAACACTTCA 327 ***** ** * *** * * ** * ** * ** *** consensus_7480#0 C--CAAAAAAAAA-AAAAAA---------------------------------------- 1803 consensus_7480#2 C--CAATTTAATT-GCTTACAT-------------------------------------- 230 consensus_7480#1 CACTGACTGGGTTTACTCACGGACACTACACTACTTTTGTCTGTACGGACGGGCACTTTA 387 * * * consensus_7480#0 ------------------------------------------------------- consensus_7480#2 ------------------------------------------------------- consensus_7480#1 CCTATACCCGGCGCTTACTACCAACGCCACGACACGTCTGGGACGACACACTACG 442 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||