|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1803 fasta sequence
[CCCGTGCCGCGTCGGAAGCTTCTGGATCCCAGATCTCGGCCAAAAACCCTAACCCTCTCGAAGCTTCTAGAATCACGCCCCCTCCCCCCTCCCCCCTCCCCTCCCCATGGACGGGCTCGCGGCGCCCTCGCCGTCCCACTCCGGCGCGACGTCCGGCGGCGGCGCCTCCCACCGCAAGCGGAAGCTCCCGCCGTCGTCCCTCTCCGACGCCACCGCCGACGAGGACGACGACACCACCGCGCCGTCGTCGCCGTCCACCTCCCCGTCGTCGCCCTCACGCCCGTCCTCCCCGTCCTCCTCCCACTCCGACGATGACGACGACGACTCCCTCCACACCTTCACCGCCGCCCGCCTCGACGGCGCGCCCCCGTCCTCATCCGGCCGCCCGCCGAAGCCCGAGTCCTCGACCGTGTCTGCCGCCGCCGCGGCCGCGGCTGCAGCGGCCGCTCCCAAGCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAAGCGTGAGGAAGAAGCAGGGAGGCTGAAATTTCTATGCTATTCTAATGATGGAGTTGATGAACATATGATTTGGTTGGTAGGCTTGAAGAATATCTTTGCTCGGCAGCTTCCTAACATGCCCAAAGAGTACATTGTCCGTCTTGTTATGGATAGAACTCACAAATCAATGATGGTTATCAGGAATAATATTGTTGTAGGAGGCATTACTTACCGGCCTTATACAAGCCAGAAGTTTGGAGAAATAGCATTTTGTGCAATTACAGCTGATGAGCAAGTTAAAGGCTATGGGACACGGTTAATGAATCACCTGAAGCAACATGCCCGAGATGCTGATGGGCTCACTCATTTCTTAACTTATGCAGATAACAATGCCGTTGGCTATTTTGTAAAGCAGGGTTTCACAAAGGAGATCACATTGGACAAAGAAAGATGGCAAGGGTACATTAAAGACTATGATGGAGGAATATTGATGGAGTGCAGAATTGATCAAAAGTTGCCATATGTTGATCTGGCAACGATGATTAGGCGTCAAAGACAGGCAATTGATGAGAAAATCAGAGAGCTTTCAAACTGCCATATTGTTTATTCTGGAATTGACTTCCAAAAGAAAGAAGCTGGTATTCCAAGAAGAACGATGAAACCAGAAGACATCCAAGGCTTGAGGGAAGCTGGGTGGACGCCAGATCAGTGGGGGCATTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAATCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGAGCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTTGAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGTAGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTATTACAAGTGTGCCTCACGGCTCGAGAGCTTCTTCTCAAACAAAGTAGCATCTCAGCTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAATTGTCGTTGTAAAATTGTTGTAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTAACGTAGCAACTTCTGATGAGAGGTAATCCTGATGGCGTGTTTAATNTNTCACCAAAAAAAAAAAAAAA]
[+] EMBL AK111779 [CCCGTGCCGCGTCGGAAGCTTCTGGATCCCAGATCTCGGCCAAAAACCCTAACCCTCTCGAAGCTTCTAGAATCACGCCCCCTCCCCCCTCCCCCCTCCCCTCCCCATGGACGGGCTCGCGGCGCCCTCGCCGTCCCACTCCGGCGCGACGTCCGGCGGCGGCGCCTCCCACCGCAAGCGGAAGCTCCCGCCGTCGTCCCTCTCCGACGCCACCGCCGACGAGGACGACGACACCACCGCGCCGTCGTCGCCGTCCACCTCCCCGTCGTCGCCCTCACGCCCGTCCTCCCCGTCCTCCTCCCACTCCGACGATGACGACGACGACTCCCTCCACACCTTCACCGCCGCCCGCCTCGACGGCGCGCCCCCGTCCTCATCCGGCCGCCCGCCGAAGCCCGAGTCCTCGACCGTGTCTGCCGCCGCCGCGGCCGCGGCTGCAGCGGCCGCTCCCAAGCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAAGCGTGAGGAAGAAGCAGGGAGGCTGAAATTTCTATGCTATTCTAATGATGGAGTTGATGAACATATGATTTGGTTGGTAGGCTTGAAGAATATCTTTGCTCGGCAGCTTCCTAACATGCCCAAAGAGTACATTGTCCGTCTTGTTATGGATAGAACTCACAAATCAATGATGGTTATCAGGAATAATATTGTTGTAGGAGGCATTACTTACCGGCCTTATACAAGCCAGAAGTTTGGAGAAATAGCATTTTGTGCAATTACAGCTGATGAGCAAGTTAAAGGCTATGGGACACGGTTAATGAATCACCTGAAGCAACATGCCCGAGATGCTGATGGGCTCACTCATTTCTTAACTTATGCAGATAACAATGCCGTTGGCTATTTTGTAAAGCAGGGTTTCACAAAGGAGATCACATTGGACAAAGAAAGATGGCAAGGGTACATTAAAGACTATGATGGAGGAATATTGATGGAGTGCAGAATTGATCAAAAGTTGCCATATGTTGATCTGGCAACGATGATTAGGCGTCAAAGACAGGCAATTGATGAGAAAATCAGAGAGCTTTCAAACTGCCATATTGTTTATTCTGGAATTGACTTCCAAAAGAAAGAAGCTGGTATTCCAAGAAGAACGATGAAACCAGAAGACATCCAAGGCTTGAGGGAAGCTGGGTGGACGCCAGATCAGTGGGGGCATTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAATCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGAGCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTTGAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGTAGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTATTACAAGTGTGCCTCACGGCTCGAGAGCTTCTTCTCAAACAAAGTAGCATCTCAGCTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAA ]
[+] EMBL CA753314 [ tGATCAGTGGGGGCATTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAATCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGAGCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTTGAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGTAGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTATTACAAGTGTGCCTCACGGCTCGAGAGCTTCTTCTCAAACAAAGTAGCATCTCAGCTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAATTGTCGTTGTAAAATTGTTGTAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTAACGTAGCAACTTCTGATGAGAGGTAATCCTGATGGCGTGTTTAATNTNTCACCAAAAAAAAAAAAAAA]
consensusID : consensus_7480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[GCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAACGCGTGACGGACACGACACGCACGGGACGGCTTGACACACTTTCTACTGCTACTTCTACACTGACTTGGACGTTGACTGACACCATACTGACTTTGGTTGGTACGGGCTTGACACGACACTACTCTTTGGCTCGGCACGCTTCCTACACATGCCCAACAGACGTACCACTTGTTCCGTCTTGTTACTGGGACTACGACACCTCCACCAACACTTCACACTGACTGGGTTTACTCACGGACACTACACTACTTTTGTCTGTACGGACGGGCACTTTACCTATACCCGGCGCTTACTACCAACGCCACGACACGTCTGGGACGACACACTACG]
[+] EMBL BU666965 [GCCCGATTCCGCTTCCGCTGCCGCCGGCGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTATAGCGCTCGAGAGGAGGGCCTCAACGCGTGACGGACACGACACGCACGGGACGGCTTGACACACTTTCTACTGCTACTTCTACACTGACTTGGACGTTGACTGACACCATACTGACTTTGGTTGGTACGGGCTTGACACGACACTACTCTTTGGCTCGGCACGCTTCCTACACATGCCCAACAGACGTACCACTTGTTCCGTCTTGTTACTGGGACTACGACACCTCCACCAACACTTCACACTGACTGGGTTTACTCACGGACACTACACTACTTTTGTCTGTACGGACGGGCACTTTACCTATACCCGGCGCTTACTACCAACGCCACGACACGTCTGGGACGACACACTACG]
consensusID : consensus_7480#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence
[GAGCCGTTGAACGNGCCAACTCGGCCCAGTNGATCACAACTTGTCCAAGCCTCAACGAAGAACTGACATGGTCTATGGTACATCTGATATAGTCAATTGTTGTTGTAAAATTGTTATAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTTAACGTAGCAACTTCTGATGAGAGGTAATTCTGATGGCGTGTTTAATTTTTCACCAATTTAATTGCTTACAT]
[+] EMBL AA754472 [GAGCCGTTGAACGNGCCAACTCGGCCCAGTNGATCACAACTTGTCCAAGCCTCAACGAAGAACTGACATGGTCTATGGTACATCTGATATAGTCAATTGTTGTTGTAAAATTGTTATAGCTCTCGCCCCCCTTGTTGTGCTTTCCAGCTTTGTAGTTTTAACGTAGCAACTTCTGATGAGAGGTAATTCTGATGGCGTGTTTAATTTTTCACCAATTTAATTGCTTACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7480#0 CCCGTGCCGCGTCGGAAGCTTCTGGATCCCAGATCTCGGCCAAAAACCCTAACCCTCTCG 60
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 AAGCTTCTAGAATCACGCCCCCTCCCCCCTCCCCCCTCCCCTCCCCATGGACGGGCTCGC 120
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GGCGCCCTCGCCGTCCCACTCCGGCGCGACGTCCGGCGGCGGCGCCTCCCACCGCAAGCG 180
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GAAGCTCCCGCCGTCGTCCCTCTCCGACGCCACCGCCGACGAGGACGACGACACCACCGC 240
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GCCGTCGTCGCCGTCCACCTCCCCGTCGTCGCCCTCACGCCCGTCCTCCCCGTCCTCCTC 300
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 CCACTCCGACGATGACGACGACGACTCCCTCCACACCTTCACCGCCGCCCGCCTCGACGG 360
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 CGCGCCCCCGTCCTCATCCGGCCGCCCGCCGAAGCCCGAGTCCTCGACCGTGTCTGCCGC 420
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 CGCCGCGGCCGCGGCTGCAGCGGCCGCTCCCAAGCCCGATTCCGCTTCCGCTGCCGCCGG 480
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 CGACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTA 540
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TAGCGCTCGAGAGGAGGGCCTCAAGCGTGAGGAAGAAGCAGGGAGGCTGAAATTTCTATG 600
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 CTATTCTAATGATGGAGTTGATGAACATATGATTTGGTTGGTAGGCTTGAAGAATATCTT 660
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TGCTCGGCAGCTTCCTAACATGCCCAAAGAGTACATTGTCCGTCTTGTTATGGATAGAAC 720
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TCACAAATCAATGATGGTTATCAGGAATAATATTGTTGTAGGAGGCATTACTTACCGGCC 780
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TTATACAAGCCAGAAGTTTGGAGAAATAGCATTTTGTGCAATTACAGCTGATGAGCAAGT 840
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TAAAGGCTATGGGACACGGTTAATGAATCACCTGAAGCAACATGCCCGAGATGCTGATGG 900
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GCTCACTCATTTCTTAACTTATGCAGATAACAATGCCGTTGGCTATTTTGTAAAGCAGGG 960
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TTTCACAAAGGAGATCACATTGGACAAAGAAAGATGGCAAGGGTACATTAAAGACTATGA 1020
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TGGAGGAATATTGATGGAGTGCAGAATTGATCAAAAGTTGCCATATGTTGATCTGGCAAC 1080
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GATGATTAGGCGTCAAAGACAGGCAATTGATGAGAAAATCAGAGAGCTTTCAAACTGCCA 1140
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TATTGTTTATTCTGGAATTGACTTCCAAAAGAAAGAAGCTGGTATTCCAAGAAGAACGAT 1200
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GAAACCAGAAGACATCCAAGGCTTGAGGGAAGCTGGGTGGACGCCAGATCAGTGGGGGCA 1260
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TTCCAAATCAAGATCAGCCTTTTCTCCTGATTACAGTACTTACAGGCAACAACTTACTAA 1320
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 TCTAATGCGTTCATTGTTGAAGAATATGAATGAGCATCCTGATGCTTGGCCATTCAAAGA 1380
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GCCAGTGGATTCACGTGATGTTCCTGACTATTATGACATTATCAAAGATCCTATTGATTT 1440
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 ------------------------------------------------------------
consensus_7480#0 GAAGACAATGTCAAAAAGAGTTGAGTCTGAGCAGTATTATGTGACGCTAGAGATGTTTGT 1500
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 --------------------------------GCCCGATTCCGCTTCCGCTGCCGCCGGC 28
consensus_7480#0 AGCTGACATGAAGAGAATGTTCAGCAATGCAAAAACTTATAACTCTCCCGATACAATCTA 1560
consensus_7480#2 ------------------------------------------------------------
consensus_7480#1 GACGGCAAGGAGGACCCGAAGGGGTTGTTCACTGACAACATTCAGACCAGTGGCGCGTAT 88
consensus_7480#0 TTACAAGTGTGCCTCACGGCTCGAGAGCTTCT-TCTCAAACAAAGTAGCATCTCA----G 1615
consensus_7480#2 --------------GAGCCGTTGAACGNGCCA-ACTCGGCCCA-GTNG-ATCACA----A 39
consensus_7480#1 AGCGCTCGAGAGGAGGGCCTCAACGCGTGACGGACACGACACGCACGGGACGGCTTGACA 148
* * * * * * *
consensus_7480#0 CTTGCCCAAGCCTCAACGAAGAACTGACATGGTCTTTGGTACATCTGATATAGTCAATTG 1675
consensus_7480#2 CTTGTCCAAGCCTCAACGAAGAACTGACATGGTCTATGGTACATCTGATATAGTCAATTG 99
consensus_7480#1 CACTTTCTACTGCTACTTCTACACTGACTTGGACGTTGACTGACACCATACTGACTTTGG 208
* * * * ****** *** * ** * *** * * * *
consensus_7480#0 TCGTTGTAAAATTGTTGTAGCTCTCGCCCCC--CTTGTTGTGCTTTCCAGCTTTGTAGTT 1733
consensus_7480#2 TTGTTGTAAAATTGTTATAGCTCTCGCCCCC--CTTGTTGTGCTTTCCAGCTTTGTAGTT 157
consensus_7480#1 TTGGTACGGGCTTGACACGACACTACTCTTTGGCTCGGCACGCTTCCTACACATGCCCAA 268
* * * *** * ** * ** * **** * * **
consensus_7480#0 T-AACGTAGCAACT------TCTGATGAGAGGTAATCCTGATGGCGTGTTTAATNTNTCA 1786
consensus_7480#2 TTAACGTAGCAACT------TCTGATGAGAGGTAATTCTGATGGCGTGTTTAATTTTTCA 211
consensus_7480#1 CAGACGTACCACTTGTTCCGTCTTGTTACTGG-GACTACGACACCTCCACCAACACTTCA 327
***** ** * *** * * ** * ** * ** ***
consensus_7480#0 C--CAAAAAAAAA-AAAAAA---------------------------------------- 1803
consensus_7480#2 C--CAATTTAATT-GCTTACAT-------------------------------------- 230
consensus_7480#1 CACTGACTGGGTTTACTCACGGACACTACACTACTTTTGTCTGTACGGACGGGCACTTTA 387
* * *
consensus_7480#0 -------------------------------------------------------
consensus_7480#2 -------------------------------------------------------
consensus_7480#1 CCTATACCCGGCGCTTACTACCAACGCCACGACACGTCTGGGACGACACACTACG 442
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||