These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 843 fasta sequence [AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCACACATAAACATAGCGGCCGTGATCAACTGATCAGTCCAGCCTGACAGAGAATTCAGAGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGTATTCAGGGAGAATATCTGAATTGCATTGCACTTTGCATGATCGGGACATTCTCGTTAATTTCATAATTAAAATTCAGATGCTCTCTCTGTACGTAACTACGTATAATACTAATATACTTTGCTGAATTGCTTTGGTTCTTACTTGATGTGTGCAGGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTNCTGAACTGCCTGTGGACGAAGACGAACAGACANAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTANATAGAGCCTANGAGAGGTGGAGGATGCACTTACAGAGAGACAGAATGTGGTGGGTCTCTGCTTAATATTGTTAGTACCCACTTGGTTATTCCTCTGGTCAATGGGAAACTCCGTTAAG] [+] EMBL CA757934 [AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCACACATAAACATAGCGGCCGTGATCAACTGATCAGTCCAGCCTGACAGAGAATTCAGAGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGTATTCAGGGAGAATATCTGAATTGCATTGCACTTTGCATGATCGGGACATTCTCGTTAATTTCATAATTAAAATTCAGATGCTCTCTCTGTACGTAACTACGTATAATACTAATATACTTTGCTGAATTGCTTTGGTTCTTACTTGATGTGTGCAGGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTNCTGAACTGCCTGTGGACGAAGACGAACAGACANAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTANATAGAGCCTANGAGAGGTGGAGGATGCACTTACAGAGAGACAGAATGTGGTGGGTCTCTGCTTAATATTGTTAGTACCCACTTGGTTATTCCTCTGGTCAATGGGAAACTCCGTTAAG] consensusID : consensus_7483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 762 fasta sequence [AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCC-ACACATAAACATAGCGGCCG-TGATCAACTGATC--AGTCCCAGCCTGACAGAGNAATTCAAGGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTCCTGAACTGCCTGTGGACGAAGACGAACAGACAAAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTAGATAGAGCCTAGGAGAGTAGGAGGATGCACTTACAGAGAGACAGAATGTGTTGTTCTCTGCTTAATTTGTTAGTTACCACACTGTTTAATTCCTCTGTTCAATGGGAAATTCGTTTAGGGTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSS1839A [AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCC ACACATAAACATAGCGGCCG TGATCAACTGATC AG ] [+] EMBL OSS2481A [ AGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGANGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCAACACATAAACATAGCGGCCGTTGATCAACTGATCCAAGTCCCAGCCTGACAGAGNAATTCAAG ] [+] EMBL AU097636 [ GAAGAAGAAGAGAGCCCTCGCATGGCGATGAGAGCTCGCATCTGGTANCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCC ACACATAAACATAGCGGCCG TGATCAACTGATC AGT CCAGCCTGACAGAG AATTCAGAGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTCCTGAACTGCCTGTGGACGAAGACGAACAGACAAAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTAGATAGAGCCTAGGAGAGTAGGAGGATGCACTTACAGAGAGACAGAATGTGTTGTTCTCTGCTTAATTTGTTAGTTACCACACTGTTTAATTCCTCTGTTCAATGGGAAATTCGTTTAGGGTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7483#0 AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAG 60 consensus_7483#1 AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAG 60 ************************************************************ consensus_7483#0 AAGAAGA------------------------------------------GAGGCCTCGCA 78 consensus_7483#1 AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCA 120 ******* *********** consensus_7483#0 TGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTG 138 consensus_7483#1 TGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTG 180 ************************************************************ consensus_7483#0 CAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCC 198 consensus_7483#1 CAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCC 240 ************************************************************ consensus_7483#0 TTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCT 258 consensus_7483#1 TTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCT 300 ************************************************************ consensus_7483#0 TATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCA 318 consensus_7483#1 TATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCA 360 ************************************************************ consensus_7483#0 CACATAAACATAGCGGCCGTGATCAACTGATCAGTCC-AGCCTGACAGAGAA-TTCAGAG 376 consensus_7483#1 CACATAAACATAGCGGCCGTGATCAACTGATCAGTCCCAGCCTGACAGAGNAATTCAAGG 420 ************************************* ************ * **** * consensus_7483#0 AGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGTATTCAGGG 436 consensus_7483#1 AGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATG--------- 471 *************************************************** consensus_7483#0 AGAATATCTGAATTGCATTGCACTTTGCATGATCGGGACATTCTCGTTAATTTCATAATT 496 consensus_7483#1 ------------------------------------------------------------ consensus_7483#0 AAAATTCAGATGCTCTCTCTGTACGTAACTACGTATAATACTAATATACTTTGCTGAATT 556 consensus_7483#1 ------------------------------------------------------------ consensus_7483#0 GCTTTGGTTCTTACTTGATGTGTGCAGGCAGGCAAGATCAAGACTACAGCGGTGCGTGCT 616 consensus_7483#1 ----------------------------CAGGCAAGATCAAGACTACAGCGGTGCGTGCT 503 ******************************** consensus_7483#0 TNCTGAACTGCCTGTGGACGAAGACGAACAGACANAGCTAGTGATCGATCGATGCTCTGA 676 consensus_7483#1 TCCTGAACTGCCTGTGGACGAAGACGAACAGACAAAGCTAGTGATCGATCGATGCTCTGA 563 * ******************************** ************************* consensus_7483#0 CGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTANATAGAGCCTAN 736 consensus_7483#1 CGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTAGATAGAGCCTAG 623 ************************************************ ********** consensus_7483#0 GAGAGGTGGAGGATGCACTTACAGAGAGACAGAATGTGGTGGGTCTCTGCTTAATATTGT 796 consensus_7483#1 GAGAGTAGGAGGATGCACTTACAGAGAGACAGAATGTGTTGT-TCTCTGCTTAAT-TTGT 681 ***** ******************************* ** ************ **** consensus_7483#0 TAGTACCCACTTGGTT--ATTCCTCTGGTCAATGGGAAACTCCGTTAAG----------- 843 consensus_7483#1 TAGTTACCACACTGTTTAATTCCTCTGTTCAATGGGAAATTCGTTTAGGGTGTGTTTAAA 741 **** **** *** ********* *********** ** *** * consensus_7483#0 --------------------- consensus_7483#1 AAAAAAAAAAAAAAAAAAAAA 762 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||