These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1101 fasta sequence [CCGACTTCAAAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGT-GCGGCTGCACTCG-CTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGG---CGGCGAC-GACG-ACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCATGGATCAATGCCAGATTACCGATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCATGAGTGGAAGTAATCAAGTAAACTGTAATATTGAGT] [+] EMBL AK108756 [CCGACTTCAAAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGT GCGGCTGCACTCG CTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGG CGGCGAC GACG ACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCATGGATCAATGCCAGATTACCGATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCATGAGTGGAAGTAATCAAGTAAACTGTAATATTGAGT] [+] EMBL CB651599 [ AAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGTGGCGGCTGCACTCGACTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGG CGGCGAC GACG ACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGNCAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAG ] [+] EMBL C74199 [ ACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCNGCGCCGCAGGGGGGAACCGGAACGGACGAACGACG ] consensusID : consensus_7485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CAAGCTTNTCCACCGAGTCCGACGTNTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGACGNCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCAAAAAAAAAAAAAAAA] [+] EMBL AU082991 [CAAGCTTNTCCACCGAGTCCGACGTNTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGACGNCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7485#0 CCGACTTCAAAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGTGCGGCT 60 consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 GCACTCGCTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTAC 120 consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 ACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCA 180 consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 CCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCC 240 consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 GCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAG 300 consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 TCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCC 360 consensus_7485#1 -------------------------------------------------CAAGCTTNTCC 11 *** * *** consensus_7485#0 ACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTC 420 consensus_7485#1 ACCGAGTCCGACGTNTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTC 71 ************** ********************************************* consensus_7485#0 CGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAG 480 consensus_7485#1 CGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAG 131 ************************************************************ consensus_7485#0 CCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGGC 540 consensus_7485#1 CCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGAC 191 ********************************************************** * consensus_7485#0 GGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATG 600 consensus_7485#1 GNCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATG 251 * ********************************************************** consensus_7485#0 GCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGG 660 consensus_7485#1 GCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGG 311 ************************************************************ consensus_7485#0 TGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGAC 720 consensus_7485#1 TGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGAC 371 ************************************************************ consensus_7485#0 CTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTC 780 consensus_7485#1 CTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTC 431 ************************************************************ consensus_7485#0 GCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTC 840 consensus_7485#1 GCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTC 491 ************************************************************ consensus_7485#0 AGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGT 900 consensus_7485#1 AGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGT 551 ************************************************************ consensus_7485#0 GTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCC 960 consensus_7485#1 GTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCC 611 ************************************************************ consensus_7485#0 AATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCATGGATCAATGCCAGATTACC 1020 consensus_7485#1 AATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCAAAAAAAAAAAAAAAA----- 666 **************************************** * ** * * consensus_7485#0 GATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCATGAGTGGAAGTAATC 1080 consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 AAGTAAACTGTAATATTGAGT 1101 consensus_7485#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||