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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1027 fasta sequence
[CCTGCGATCCCCCGTAGGCTCACTCATACCTTCCTTCTCCCTCTGCTGCTTGCAAACTCTCTCCTTGACGTTTCTTTCGATTTTGGAAGAGGAGGTAGGAGAAGAGAATTAGTTGCCGAGTTTATCTGAACTTGAGGACATAAGCAATTCTTTTCTCCATAAGATCTGCATCTATATCGTGAAACTAGGTGACCTTTTCAGTTGCACCCTTGTCTACTCACAGTAGATGATGAAAATTTTGACAACGGTGAAATTTCTGATGGAGGTAGCTTGATAGCTACATTTGGTCTGAAAGACTGAAACTGGACACAGAAGTATACGAGAAAAGTGATTGGCTGGGTTTTGATAGGGAAAATGGTAGAAGCCTCAAATCCAACACAAGATATGATAGATATAACTGGACATGTAGTACATGATGATGTTTCTTACGACAAGGATGTTTTGGAGATAAAATTGCCAGATACTGTTGTTACTTCTGATTATGGTGGCAATTTTGTCAAGGATGTCTGCATCGATGAAGGAGTACTTCCGCATCGGAAAATTTCAGCAGAAAAAAAGTTAGATGAGAAGTCACCACCAAATTTTGATTTCCTAATGATAGACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGACAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAACAATGTGATCTTGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTGCATGAGTTACTTAAGCTTGAAAGTGCAGAAGAATCCAAGGAAAGACTTAAACTTGAAAGTGCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAAAAAAACATGCCCCCTGTTCATGAAGAGGCTATTGCACAGGTAACCACATAAGTTACTGGCTTAATCTGTAATCAAATTTGTTTTCTCATTACCACTATCACCAGGTTTGTCATTATTATTTTTTTATTACCTGACC]
[+] EMBL CB633909 [CCTGCGATCCCCCGTAGGCTCACTCATACCTTCCTTCTCCCTCTGCTGCTTGCAAACTCTCTCCTTGACGTTTCTTTCGATTTTGGAAGAGGAGGTAGGAGAAGAGAATTAGTTGCCGAGTTTATCTGAACTTGAGGACATAAGCAATTCTTTTCTCCATAAGATCTGCATCTATATCGTGAAACTAGGTGACCTTTTCAGTTGCACCCTTGTCTACTCACAGTAGATGATGAAAATTTTGACAACGGTGAAATTTCTGATGGAGGTAGCTTGATAGCTACATTTGGTCTGAAAGACTGAAACTGGACACAGAAGTATACGAGAAAAGTGATTGGCTGGGTTTTGATAGGGAAAATGGTAGAAGCCTCAAATCCAACACAAGATATGATAGATATAACTGGACATGTAGTACATGATGATGTTTCTTACGACAAGGATGTTTTGGAGATAAAATTGCCAGATACTGTTATTACTTCTGATTATGGTGGCAATTTTGTCAAGGATGTCTGCATCGATGAAGGAGTACTTCCGCATCGGAAAATTTCAGCAGAAAAAAAGTTAGATGAGAAGTCACCACCAAATTTTGATTTCCTAATGATAGACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGACAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAACAATGTGATCTTGAAAGCAGGGATACTGCT ]
[+] EMBL CB657552 [ AACCGTGAAATTTCTGATGGAGGTAGCTTGATAGCTACATTTGGTCTGAAAGACTGAAACTGGACACAGAAGTATACGAGAAAAGTGATTGGCTGGGTTTTGATAGGGAAAATGGTAGAAGCCTCAAATCCAACACAAGATATGATAGATATAACTGGACATGTAGTACATGATGATGTTTCTTACGACAAGGATGTTTTGGAGATAAAATTGCCAGATACTGTTGTTACTTCTGATTATGGTGGCAATTTTGTCAAGGATGTCTGCATCGATGAAGGAGTACTTCCGCATCGGAAAATTTCAGCAGAAAAAAAGTTAGATGAGAAGTCACCACCAAATTTTGATTTCCTAATGATAGACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGACAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAACAATGTGATCTTGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTGCATGAGTTACTTAAGCTTGAAAGTGCAGAAGAATCCAAGGAAAGACTTAAACTTGAAAGTGCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAAAAAAACATGCCCCCTGTTCATGAAGAGGCTATTGCACAGGTAACCACATAAGTTACTGGCTTAATCTGTAATCAAATTTGTTTTCTCATTACCACTATCACCAGGTTTGTCATTATTATTTTTTTATTACCTGACC]
[+] EMBL CB657551 [ AACGGTGAAATTTCTGATGGAGGTAGCTTGATAGCTACATTTGGTCTGAAAGACTGAAACTGGACACAGAAGTATACGAGAAAAGTGATTGGCTGGGTTTTGATAGGGAAAATGGTAGAAGCCTCAAATCCAACACAAGATATGATAGATATAACTGGACATGTAGTACATGATGATGTTTCTTACGACAAGGATGTTTTGGAGATAAAATTGCCAGATACTGTTGTTACTTCTGATTATGGTGGCAATTTTGTCAAGGATGTCTGCATCGATGAAGGAGTACTTCCGCATCGGAAAATTTCAGCAGAAAAAAAGTTAGATGAGAAGTCACCACCAAATTTTGATTTCCTAATGATAGACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGACAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAACAATGTGATCTTGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTGCATGAGTTACTTAAGCTTGAAAGTGCAGAAGAATCCAAGGAAAGACTTAAACTTGAAAGTGCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAAAAAAACATGCCCCCTGTTCATGAAGAGGCTATTGCACAGGTAACCACATAAGTTACTGGCTTAATCTGTAATCAAATTTGTTTTCTCATTACCACTATCACCAGGTTTGTCATTATTATTTTTTTATTACCTGAC ]
consensusID : consensus_7486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[AGATGACCTTTCACCACCAAATTTTGATTTCCTAATGATAGACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGACAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAACAATGTGATCTTGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTGCATGAGTTACTTAAGCTTGAAAGTGCAGAAGAATCCAAGGAAAGACTTAAACTTGAAAGTGCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAAAAAAACATGCCCCCTGTTCATGAAGAGGCTATTGCACAGGTTTCCACAAATGACTGCAATGATGTTGCAACTGCATCAAAAACTGATGAACTTATTACTAGCAACGTATCAAGTATCAATAACACCAACGGTTCATCAGCAACAATATCTGACAGACATGATGCAACCGCAGCATTAGATAAACCCATGTCCACTGCTGAGACTACTGACGGTTTAATTGGCTCCAAACAATTTAACGAAGTTGGAACAGCAGAAGCCATGCCTGATGCTCTGACATCAAGTAGTTCTTCAGAAGTCCAACCATCCGAAAAGAGCAACGACCACCCCGAAAGCTTCACCAGCGAGCCGATAGCGGATCCAC]
[+] EMBL CB653833 [AGATGACCTTTCACCACCAAATTTTGATTTCCTAATGATAGACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGACAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAACAATGTGATCTTGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTGCATGAGTTACTTAAGCTTGAAAGTGCAGAAGAATCCAAGGAAAGACTTAAACTTGAAAGTGCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAAAAAAACATGCCCCCTGTTCATGAAGAGGCTATTGCACAGGTTTCCACAAATGACTGCAATGATGTTGCAACTGCATCAAAAACTGATGAACTTATTACTAGCAACGTATCAAGTATCAATAACACCAACGGTTCATCAGCAACAATATCTGACAGACATGATGCAACCGCAGCATTAGATAAACCCATGTCCACTGCTGAGACTACTGACGGTTTAATTGGCTCCAAACAATTTAACGAAGTTGGAACAGCAGAAGCCATGCCTGATGCTCTGACATCAAGTAGTTCTTCAGAAGTCCAACCATCCGAAAAGAGCAACGACCACCCCGAAAGCTTCACCAGCGAGCCGATAGCGGATCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7486#0 CCTGCGATCCCCCGTAGGCTCACTCATACCTTCCTTCTCCCTCTGCTGCTTGCAAACTCT 60
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 CTCCTTGACGTTTCTTTCGATTTTGGAAGAGGAGGTAGGAGAAGAGAATTAGTTGCCGAG 120
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 TTTATCTGAACTTGAGGACATAAGCAATTCTTTTCTCCATAAGATCTGCATCTATATCGT 180
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 GAAACTAGGTGACCTTTTCAGTTGCACCCTTGTCTACTCACAGTAGATGATGAAAATTTT 240
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 GACAACGGTGAAATTTCTGATGGAGGTAGCTTGATAGCTACATTTGGTCTGAAAGACTGA 300
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 AACTGGACACAGAAGTATACGAGAAAAGTGATTGGCTGGGTTTTGATAGGGAAAATGGTA 360
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 GAAGCCTCAAATCCAACACAAGATATGATAGATATAACTGGACATGTAGTACATGATGAT 420
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 GTTTCTTACGACAAGGATGTTTTGGAGATAAAATTGCCAGATACTGTTGTTACTTCTGAT 480
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 TATGGTGGCAATTTTGTCAAGGATGTCTGCATCGATGAAGGAGTACTTCCGCATCGGAAA 540
consensus_7486#1 ------------------------------------------------------------
consensus_7486#0 ATTTCAGCAGAAAAAAAGTTAGATGAGAAGTCACCACCAAATTTTGATTTCCTAATGATA 600
consensus_7486#1 --------------------AGATGACCTTTCACCACCAAATTTTGATTTCCTAATGATA 40
****** ******************************
consensus_7486#0 GACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGA 660
consensus_7486#1 GACACGAATAGTGATCTAACATATGGGGGGAAAGGTGATGCTAAAAAATATGCACATGGA 100
************************************************************
consensus_7486#0 CAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAA 720
consensus_7486#1 CAGAAACCAAAAACTGTTCTCCTACCTGTTGGATTCGCTGCTGACGATAACACGGAGAAA 160
************************************************************
consensus_7486#0 CAATGTGATCTTGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTG 780
consensus_7486#1 CAATGTGATCTTGAAAGCAGGGATACTGCTAGTGATATCAGTGAGAAGAAAATAAGTTTG 220
************************************************************
consensus_7486#0 CATGAGTTACTTAAGCTTGAAAGTGCAGAAGAATCCAAGGAAAGACTTAAACTTGAAAGT 840
consensus_7486#1 CATGAGTTACTTAAGCTTGAAAGTGCAGAAGAATCCAAGGAAAGACTTAAACTTGAAAGT 280
************************************************************
consensus_7486#0 GCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAAAAAAACATG 900
consensus_7486#1 GCAGAAGAATCCCAGACCCAGCATCAAAGCACAACTTCTGCAATAAATGAAAAAAACATG 340
************************************************************
consensus_7486#0 CCCCCTGTTCATGAAGAGGCTATTGCACAGGTAACCACATAAGTTACTGGCTTAAT-CTG 959
consensus_7486#1 CCCCCTGTTCATGAAGAGGCTATTGCACAGGTTTCCAC--AAATGACTGCAATGATGTTG 398
******************************** **** ** * **** * ** **
consensus_7486#0 TAATC-------AAATTTGTTTTCTCATTACCACTATC--ACCAGGT-TTGTCATTATTA 1009
consensus_7486#1 CAACTGCATCAAAAACTGATGAACTTATTACTAGCAACGTATCAAGTATCAATAACACCA 458
** *** * * ** ***** * * * * ** ** * * * *
consensus_7486#0 TTTTTTTATTACCTGACC------------------------------------------ 1027
consensus_7486#1 ACGGTTCATCAGC-AACAATATCTGACAGACATGATGCAACCGCAGCATTAGATAAACCC 517
** ** * * **
consensus_7486#0 ------------------------------------------------------------
consensus_7486#1 ATGTCCACTGCTGAGACTACTGACGGTTTAATTGGCTCCAAACAATTTAACGAAGTTGGA 577
consensus_7486#0 ------------------------------------------------------------
consensus_7486#1 ACAGCAGAAGCCATGCCTGATGCTCTGACATCAAGTAGTTCTTCAGAAGTCCAACCATCC 637
consensus_7486#0 -------------------------------------------------------
consensus_7486#1 GAAAAGAGCAACGACCACCCCGAAAGCTTCACCAGCGAGCCGATAGCGGATCCAC 692
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||