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Oryza sativa
cluster # 7497 cluster # 7497       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7497#0 length = 1980 sequences # 4  

consensusID : consensus_7497#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1980
fasta sequence
                              [TTCTCCTCCTCTCTCTCTCTCCGACACGCCCCTTTAACTCGCTCCCGATTCCAAAAAATTCCGCCATAGATTAAAGCGAGAAACCCCAAGCAACCACCACCACCACGACCCGGAGTCCTCCCGGATCGATCAGTCCAACCCTGCGAATCAAATCCCAAGCCTTCTCGACGCTGGCCTCGATCGATTGGGAGGCCGCGTCTGCGTCCCCTTCTCTTTCCGGAGGAAGCTGGTGGCTTGCTGTGCGGCGGTGGCATCGTCGGTTGGAGGCGCGGGGGAGCACTCGTCGCGTCCCGGGGGAGATCGAATCTAGCGGCGGACGGGCAATGCGGTTGGTTTCCGGGGTGATTTGAGGCGGGAGGCTGGGATCTGGGTCTGGAAGGGAGGTGGGGAGCTCTGTCGGTGGGGTGGGGGGTGGGGGGAGTTGGTGGCGAGTCGACCGCGTGCTCGGGTTTGTGAGTGAGTATGGAGCGCGTAATT-GGGGCAAGTTTAAGCTCGNGAAGAAG-TCGTGAGTGGATCCTTCGGGGAGCTCTATCTCGCCGTGAACATACAGAATAGCGAAGAGGTGGCCGTCAAACTGGAGTCTGTGAAATCAAGGCATCCTCAGCTACACTATGAATCAAAACTATATATGCTTTTGCAAGGAGGAACTGGGATTCCACATCTTAAGTGGTTTGGGGTTGAGGGGGAGTACAATGTAATGGTGATCGATCTTCTTGGCCCAAGTCTTGAGGACCTATTTAACTACTGCAACAGAAAGCTCTCTCTTAAATCAGTGCTTATGCTTGCTGATCAGATGATTGCTAGAGTAGAGTACATGCACACGAGAGGATTCCTTCATCGTGATATTAAGCCAGACAATTTCCTTATGGGTTTGGGTCGTAAAGCAAATCAGGTTTATGTCATCGATTATGGGCTTGCGAAAAAGTACCGAGATCTCCAAACACATAAGCACATACCTTATAGGGAAAACAAAAATCTAACTGGAACTGCACGATATGCTAGTGTTAATACACATCTTGGAGTTGAACAAAGCAGGAGAGATGATTTGGAATCTCTCGGTTATGTACTGATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAAGGTCTGAAAGCTGGTACAAAGAAGCAAAAGTATGATAGAATCAGTGAAAAGAAGATGCTGACCCCAGTTGAGGTCCTCTGTAAATCTTATCCATCAGAATTTGTTTCATACTTCCATTATTGCCGATCACTACGGTTTGAAGATAAGCCAGACTATTCCTATTTGAAGAAGCTCTTCCGAGACTTATTTATCCGTGAAGGGTACCAACTTGATTATGTATTTGACTGGACCATGTTGAAGTATCCTCAAATTAGAGATAACAAACTACGACCTAGTGGGAAGACAAGTGGGTTGGTGGGTCGTTCTGCAGAACGGACTGAAAGAACTACAGGTGAAGCTCTTGCTAGAAGAACTGGCTCTGGTTCTGGCCGAAATGGAGAACCCACTAAGCACAGAACTCTACTGGACTCACTGATGTCATCTAAGGCTACCGCTGATACAGATAAAACAAGGCCGACATCACTGTCGCGGAACGGGAGCACGTCAAGACGGGCTGTTGTTTCGTCGAGCAAACCGAATTGTGGAGATCCCAGTGACACCAATCGCACAAGCCGCCTATTCTCAAGTAGCAGCAGCCGGCCATCCGCTGCCCAAAGGGCGCTTCAGTCGGCCGGAGCTGAGCTGAGGTCCTCGTCGTTGTCCAAGACGCGTAAGAGCTCACGTGATGATCCCACCATACGGAGCTTCGAGATGCTCTCACTCAGCGCTGACAGGAGGAAATAAGGAACGGATGTATTGATGTTACTGGCAAGAGACTATTATTTGGGGTGCAGTGTTA-TGAGCTGCCGCTCCACTATTGGTACGTTGAAATGCAATCATAATGAACAGATGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]

[+] EMBL C91756               [TTCTCCTCCTCTCTCTCTCTCCGACACGCCCCTTTAACTCGCTCCCGATTCCAAAAAATTCCGCCATAGATTAAAGCGAGAAACCCCAAGCAACCACCACCACCACGACCCGGAGTCCTCCCGGATCGATCAGTCCAACCCTGCGAATCAAATCCCAAGCCTTCTCGACGCTGGCCTCGATCGATTGGGAGNCCGCGTCTGCGTCCCCTTCTCTTTCCGGAGGAAGCTGGTGGCTTGCTGTGCGGCGGTGGCATCGTCGGTTGGAGGCGCGGGGGAGCACTCGTCGCGTCCCGGGGGAGATCGAATCTAGCGGCGGACGGGCAATGCGGTTGGTTTCCGGGGTGANTTNAGGCGGGAGGCTNGGATCTTGGTCTTGAAGGGAGGTNGGGAGCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C28415               [                                                                                  ACCCCAAGCAACCACCACCACCACGACCCGGAGTCCTCCCGGATCGATCAGTCCAACCCTGCGAATCAAATCCCAAGCCTTCTCGACGCTGGCCTCGATCGATTGGGAGGCCGCGTCTGCGTCCCCTTCTCTTTCCGGA GAAGCTGGTGGCTTGCTGTGCGGCGGTGGCATCGTCGGTTGGAGGCGCGTGGGAGCACTCGTCGCGTCCCGGGGGAGATCGAATCTAGCGGCGGACGNGCAATGCGGTTGGTTTCCGGGGTGATTTGAGGCGNGAGGCTGGGATCTGGGTCTGGAAGGGAGGTGGGGAGCTCTGTCGGTGGGGTGGGGGGTGGGGGGAGTTGGTGGCGAGTCGACCGCGTGCTCGGGTTTGTGAGTGAGTATGGAGCGCGTAATT GGGGCAAGTTTAAGCTCGNGAAGAAG TCGTGAGTGGATCCTTCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK111987             [                                                                                                                                                          CCAAGCCTTCTCGACGCTGGCCTCGATCGATTGGGAGGCCGCGTCTGCGTCCCCTTCTCTTTCCGGAGGAAGCTGGTGGCTTGCTGTGCGGCGGTGGCATCGTCGGTTGGAGGCGCGGGGGAGCACTCGTCGCGTCCCGGGGGAGATCGAATCTAGCGGCGGACGGGCAATGCGGTTGGTTTCCGGGGTGATTTGAGGCGGGAGGCTGGGATCTGGGTCTGGAAGGGAGGTGGGGAGCTCTGTCGGTGGGGTGGGGGGTGGGGGGAGTTGGTGGCGAGTCGACCGCGTGCTCGGGTTTGTGAGTGAGTATGGAGCGCGTTATTGGGGGCAAGTTTAAGCTCGGGAAGAAGATCGGGAGTGGATCCTTCGGGGAGCTCTATCTCGCCGTGAACATACAGAATAGCGAAGAGGTGGCCGTCAAACTGGAGTCTGTGAAATCAAGGCATCCTCAGCTACACTATGAATCAAAACTATATATGCTTTTGCAAGGAGGAACTGGGATTCCACATCTTAAGTGGTTTGGGGTTGAGGGGGAGTACAATGTAATGGTGATCGATCTTCTTGGCCCAAGTCTTGAGGACCTATTTAACTACTGCAACAGAAAGCTCTCTCTTAAATCAGTGCTTATGCTTGCTGATCAGATGATTGCTAGAGTAGAGTACATGCACACGAGAGGATTCCTTCATCGTGATATTAAGCCAGACAATTTCCTTATGGGTTTGGGTCGTAAAGCAAATCAGGTTTATGTCATCGATTATGGGCTTGCGAAAAAGTACCGAGATCTCCAAACACATAAGCACATACCTTATAGGGAAAACAAAAATCTAACTGGAACTGCACGATATGCTAGTGTTAATACACATCTTGGAGTTGAACAAAGCAGGAGAGATGATTTGGAATCTCTCGGTTATGTACTGATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAAGGTCTGAAAGCTGGTACAAAGAAGCAAAAGTATGATAGAATCAGTGAAAAGAAGATGCTGACCCCAGTTGAGGTCCTCTGTAAATCTTATCCATCAGAATTTGTTTCATACTTCCATTATTGCCGATCACTACGGTTTGAAGATAAGCCAGACTATTCCTATTTGAAGAAGCTCTTCCGAGACTTATTTATCCGTGAAGGGTACCAACTTGATTATGTATTTGACTGGACCATGTTGAAGTATCCTCAAATTAGAGATAACAAACTACGACCTAGTGGGAAGACAAGTGGGTTGGTGGGTCGTTCTGCAGAACGGACTGAAAGAACTACAGGTGAAGCTCTTGCTAGAAGAACTGGCTCTGGTTCTGGCCGAAATGGAGAACCCACTAAGCACAGAACTCTACTGGACTCACTGATGTCATCTAAGGCTACCGCTGATACAGATAAAACAAGGCCGACATCACTGTCGCGGAACGGGAGCACGTCAAGACGGGCTGTTGTTTCGTCGAGCAAACCGAATTGTGGAGATCCCAGTGACACCAATCGCACAAGCCGCCTATTCTCAAGTAGCAGCAGCCGGCCATCCGCTGCCCAAAGGGCGCTTCAGTCGGCCGGAGCTGAGCTGAGGTCCTCGTCGTTGTCCAAGACGCGTAAGAGCTCACGTGATGATCCCACCATACGGAGCTTCGAGATGCTCTCACTCAGCGCTGACAGGAGGAAATAAGGAACGGATGTATTGATGTTACTGGCAAGAGACTATTATTTGGGGTGCAGTGTTA TGAGCTGCCGCTCCACTATTGGTACGTTGAAATGCAATCATAATGAAC                                                    ]
[+] EMBL AU094761             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCCCAGTGACNCCAATCGCACAAGCCNCCTATTCTCAAGTNGCAGCAGCCNGCCATCCGCTNCCCAAAGGGCGCTTCAGTCNNCCGGAGCTGAGCTGAGGTCCTCGTCGTTGTCCAAGACGCGTAAGNGCTCACGTGATGATCCCNCCATACGGAGCTTCGAGATGCTCTCACTCAGCGCTNACAGGNGGAAATAAGGNACGGATGTATTGATGTTACTGGCAAGAGACTNTTNTTTGGGGTGCAGTGTTAGTGAG TGCCGCTCCACTATTGGTACGTTGAAATGCAATCATAATGAACAGATGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]


>consensus_7497#0 TTCTCCTCCTCTCTCTCTCTCCGACACGCCCCTTTAACTCGCTCCCGATTCCAAAAAATT CCGCCATAGATTAAAGCGAGAAACCCCAAGCAACCACCACCACCACGACCCGGAGTCCTC CCGGATCGATCAGTCCAACCCTGCGAATCAAATCCCAAGCCTTCTCGACGCTGGCCTCGA TCGATTGGGAGGCCGCGTCTGCGTCCCCTTCTCTTTCCGGAGGAAGCTGGTGGCTTGCTG TGCGGCGGTGGCATCGTCGGTTGGAGGCGCGGGGGAGCACTCGTCGCGTCCCGGGGGAGA TCGAATCTAGCGGCGGACGGGCAATGCGGTTGGTTTCCGGGGTGATTTGAGGCGGGAGGC TGGGATCTGGGTCTGGAAGGGAGGTGGGGAGCTCTGTCGGTGGGGTGGGGGGTGGGGGGA GTTGGTGGCGAGTCGACCGCGTGCTCGGGTTTGTGAGTGAGTATGGAGCGCGTAATTGGG GCAAGTTTAAGCTCGNGAAGAAGTCGTGAGTGGATCCTTCGGGGAGCTCTATCTCGCCGT GAACATACAGAATAGCGAAGAGGTGGCCGTCAAACTGGAGTCTGTGAAATCAAGGCATCC TCAGCTACACTATGAATCAAAACTATATATGCTTTTGCAAGGAGGAACTGGGATTCCACA TCTTAAGTGGTTTGGGGTTGAGGGGGAGTACAATGTAATGGTGATCGATCTTCTTGGCCC AAGTCTTGAGGACCTATTTAACTACTGCAACAGAAAGCTCTCTCTTAAATCAGTGCTTAT GCTTGCTGATCAGATGATTGCTAGAGTAGAGTACATGCACACGAGAGGATTCCTTCATCG TGATATTAAGCCAGACAATTTCCTTATGGGTTTGGGTCGTAAAGCAAATCAGGTTTATGT CATCGATTATGGGCTTGCGAAAAAGTACCGAGATCTCCAAACACATAAGCACATACCTTA TAGGGAAAACAAAAATCTAACTGGAACTGCACGATATGCTAGTGTTAATACACATCTTGG AGTTGAACAAAGCAGGAGAGATGATTTGGAATCTCTCGGTTATGTACTGATGTACTTCTT AAGAGGAAGTCTTCCTTGGCAAGGTCTGAAAGCTGGTACAAAGAAGCAAAAGTATGATAG AATCAGTGAAAAGAAGATGCTGACCCCAGTTGAGGTCCTCTGTAAATCTTATCCATCAGA ATTTGTTTCATACTTCCATTATTGCCGATCACTACGGTTTGAAGATAAGCCAGACTATTC CTATTTGAAGAAGCTCTTCCGAGACTTATTTATCCGTGAAGGGTACCAACTTGATTATGT ATTTGACTGGACCATGTTGAAGTATCCTCAAATTAGAGATAACAAACTACGACCTAGTGG GAAGACAAGTGGGTTGGTGGGTCGTTCTGCAGAACGGACTGAAAGAACTACAGGTGAAGC TCTTGCTAGAAGAACTGGCTCTGGTTCTGGCCGAAATGGAGAACCCACTAAGCACAGAAC TCTACTGGACTCACTGATGTCATCTAAGGCTACCGCTGATACAGATAAAACAAGGCCGAC ATCACTGTCGCGGAACGGGAGCACGTCAAGACGGGCTGTTGTTTCGTCGAGCAAACCGAA TTGTGGAGATCCCAGTGACACCAATCGCACAAGCCGCCTATTCTCAAGTAGCAGCAGCCG GCCATCCGCTGCCCAAAGGGCGCTTCAGTCGGCCGGAGCTGAGCTGAGGTCCTCGTCGTT GTCCAAGACGCGTAAGAGCTCACGTGATGATCCCACCATACGGAGCTTCGAGATGCTCTC ACTCAGCGCTGACAGGAGGAAATAAGGAACGGATGTATTGATGTTACTGGCAAGAGACTA TTATTTGGGGTGCAGTGTTATGAGCTGCCGCTCCACTATTGGTACGTTGAAATGCAATCA TAATGAACAGATGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)