Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7507 cluster # 7507       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7507#0 length = 1093 sequences # 2  
consensus_7507#1 length = 858 sequences # 2  

consensusID : consensus_7507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1093
fasta sequence
                              [GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGAGAATAACTCCTAA]

[+] EMBL AK060474             [GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTT                                                        ]
[+] EMBL AK073762             [ CTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGAGAATAACTCCTAA]


>consensus_7507#0 GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTG CCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGC TGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCT CCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGT CGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGA TAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCC TTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAAC TGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAA ATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGA CATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGT TCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAAC AACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGA GGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATA TGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGA TCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTA TGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCA CTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTAT AATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGA GAATAACTCCTAA



consensusID : consensus_7507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 858
fasta sequence
                              [TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTT]

[+] EMBL AK119213             [TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTT]
[+] EMBL AA751305             [                                                                                                                                                                                                                                                                                                                                                                                                               AGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAANCTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAG ABCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTBYCSCTCTCTGCAGGCAGCA                                                                                                                                                                                                                                                                                       ]


>consensus_7507#1 TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCC GCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTG GAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCC CGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCG TCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGGTTGGATCCCAAGTCGTATATTCAAAAT ATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACA TCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTC TTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAA CAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGG AAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATG CTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATC TAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATG CCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACT CGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAA TGAATGCCAACTTTTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7507#0      GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTG 60
consensus_7507#1      --TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTG 58
                        **********************************************************

consensus_7507#0      CCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGC 120
consensus_7507#1      CCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGC 118
                      ************************************************************

consensus_7507#0      TGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCT 180
consensus_7507#1      TGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCT 178
                      ************************************************************

consensus_7507#0      CCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGT 240
consensus_7507#1      CCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGT 238
                      ************************************************************

consensus_7507#0      CGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGA 300
consensus_7507#1      CGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAG-------------------------- 272
                      **********************************                          

consensus_7507#0      TAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCC 360
consensus_7507#1      ------------------------------------------------------------
                                                                                  

consensus_7507#0      TTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAAC 420
consensus_7507#1      ------------------------------------------------------------
                                                                                  

consensus_7507#0      TGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAA 480
consensus_7507#1      ----------------------------------GTTGGATCCCAAGTCGTATATTCAAA 298
                                                        **************************

consensus_7507#0      ATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGA 540
consensus_7507#1      ATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGA 358
                      ************************************************************

consensus_7507#0      CATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGT 600
consensus_7507#1      CATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGT 418
                      ************************************************************

consensus_7507#0      TCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAAC 660
consensus_7507#1      TCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAAC 478
                      ************************************************************

consensus_7507#0      AACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGA 720
consensus_7507#1      AACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGA 538
                      ************************************************************

consensus_7507#0      GGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATA 780
consensus_7507#1      GGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATA 598
                      ************************************************************

consensus_7507#0      TGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGA 840
consensus_7507#1      TGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGA 658
                      ************************************************************

consensus_7507#0      TCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTA 900
consensus_7507#1      TCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTA 718
                      ************************************************************

consensus_7507#0      TGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCA 960
consensus_7507#1      TGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCA 778
                      ************************************************************

consensus_7507#0      CTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTAT 1020
consensus_7507#1      CTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTAT 838
                      ************************************************************

consensus_7507#0      AATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGA 1080
consensus_7507#1      AATGAATGCCAACTTTTTTT---------------------------------------- 858
                      ********************                                        

consensus_7507#0      GAATAACTCCTAA 1093
consensus_7507#1      -------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)