These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1093 fasta sequence [GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGAGAATAACTCCTAA] [+] EMBL AK060474 [GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTT ] [+] EMBL AK073762 [ CTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGAGAATAACTCCTAA] consensusID : consensus_7507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence [TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTT] [+] EMBL AK119213 [TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTT] [+] EMBL AA751305 [ AGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAANCTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAG ABCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTBYCSCTCTCTGCAGGCAGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7507#0 GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTG 60 consensus_7507#1 --TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTG 58 ********************************************************** consensus_7507#0 CCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGC 120 consensus_7507#1 CCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGC 118 ************************************************************ consensus_7507#0 TGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCT 180 consensus_7507#1 TGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCT 178 ************************************************************ consensus_7507#0 CCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGT 240 consensus_7507#1 CCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGT 238 ************************************************************ consensus_7507#0 CGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGA 300 consensus_7507#1 CGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAG-------------------------- 272 ********************************** consensus_7507#0 TAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCC 360 consensus_7507#1 ------------------------------------------------------------ consensus_7507#0 TTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAAC 420 consensus_7507#1 ------------------------------------------------------------ consensus_7507#0 TGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAA 480 consensus_7507#1 ----------------------------------GTTGGATCCCAAGTCGTATATTCAAA 298 ************************** consensus_7507#0 ATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGA 540 consensus_7507#1 ATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGA 358 ************************************************************ consensus_7507#0 CATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGT 600 consensus_7507#1 CATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGT 418 ************************************************************ consensus_7507#0 TCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAAC 660 consensus_7507#1 TCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAAC 478 ************************************************************ consensus_7507#0 AACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGA 720 consensus_7507#1 AACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGA 538 ************************************************************ consensus_7507#0 GGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATA 780 consensus_7507#1 GGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATA 598 ************************************************************ consensus_7507#0 TGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGA 840 consensus_7507#1 TGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGA 658 ************************************************************ consensus_7507#0 TCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTA 900 consensus_7507#1 TCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTA 718 ************************************************************ consensus_7507#0 TGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCA 960 consensus_7507#1 TGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCA 778 ************************************************************ consensus_7507#0 CTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTAT 1020 consensus_7507#1 CTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTAT 838 ************************************************************ consensus_7507#0 AATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGA 1080 consensus_7507#1 AATGAATGCCAACTTTTTTT---------------------------------------- 858 ******************** consensus_7507#0 GAATAACTCCTAA 1093 consensus_7507#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||