These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 3002 fasta sequence [CACAGAAATATCCGCCCCAAATCATTTCCCGCAACAGCAGCCAGCCAGCTGTTCGTCCTAGGGTCATGCGCGGCGCCGCGTACGACTAGGGGACGCGCGCGCCTGCCATGGCCGCGCCCGCAGCCGCCTGCGACCTCCGCTTCCTCCTTGTGGGGTTGTTGTTGGTGGTGGTGGTGGGATCCCGCCTCGTACGGCCCCCCGATGGCGGCGGCATTCCGACGACGCTGGACGGCCCGTTCGAGCCGGCGACGCGGGCGTTCGACCGCGCGCTCCAGCAGGGGAGCGACGACGTGCCGCTCACCGACCCGCGCCTCGCGCCGCGCGCGCGGCCCCCCGCGCCCGAGCAGATCGCGCTCGCCGCCTCCTCCGACGCCACCTCGGTCTGGGTGTCGTGGGTCACCGGCGAGGCGCAGGTGGGATCCCACCTCACCCCGCTCGACCCGTCCACCGTCCGCAGCGAGGTCTGGTACAGCGAGAGGCCCTCCCCGACGGCCGCCGCCGCCGGCGACGTCTCCGGCCACTACCCGCACGTGGCGAGGGGGAAGGCGGAGGTGTACAGCCAGCTCTACCCGTACCCAGGCCTCCTCAACTACACCTCGGGCGCCATCCACCACGTCCGCCTCCGGGGCCTCAGGCCGGCCACGCGCTACTACTACCGCTGCGGCGACAGCTCCGTCCGCGGCGGCGCGGGGCTCAGCGGCGAGCTATCCTTCGAGACGCTCCCCTCCTCCGCCGCCGCGGCGTACCCTCGCCGGGTGGCGGTGGTGGGGGACCTGGGGCTGACCGGCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGGTCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCCCCTGCTTCTCCTGCTCCTTCCCCGACGCGCCGCTCCGGGAATCCTACCAACCGCGATGGGATGGCTGGGGAAGGTTCATGGAGCCGCTCACTTCGAGGATCCCAATGATGGTGATCGAAGGGAACCATGAGATCGAACCACAGGGACAAGGTGGAGCGGTGACCTTTGCATCCTACCTGGCAAGATTCGCCGTTCCATCCGAGGAGTCTGGCTCTAACACCAAGTTCTACTACTCGTTCAATGCCGGGGGCATCCATTTCATCATGCTCGGTGCCTACGTCGACTACAACCGGACAGGAGCCCAGTACTCGTGGTTAGAGAAGGATCTGCGAAAGATTGATCGACGAGTCACACCTTGGGTTGTGGCTGCTTGGCACCCGCCCTGGTATAACAGCTATTCCTCGCACTACCAGGAATTTGAGTGCATGAGACAAGCAATGGAAGGGCTCTTGTACCAACATGGTGTCGACATTGTCCTTTCAGGGCATGTGCATGCTTATGAGAGGATGAACCGGGTGTTCAACTATACTCTCGACCCCTGTGGGCCGGTCTACATTACCATTGGAGATGGAGGGAACATTGAGAAGATTGATATCGATCATGCTGATGATCCTGGAAAATGTCCCGGTCCTGGTGACAACCACCCTGAATTTGGTAGAGTCTGCCATCTCAACTTCACCTCTGGTCCTGCCAAGGGGAAATTTTGCTGGGAGAAACAGCCGGAGTGGAGCGCGTTCAGGGAGAGCAGTTTCGGACATGGCATCCTAGAGGTGGTTAATTCTACATATGCATTATGGACATGGCACCGTAACCAGGATGCATATGGAGAAGACAGCGTGGGGGATCAAATCTATATAGTTCGGCAACCGGACAAATGCTTGCTTCAGACTACGAGTGCGTCGTCTGAAAACAACTGTCCCTCTGAAGGATGCCCTTCTCTAGTGAGCAACAGTGACTACGGTGCACAGAAGGATATTATTAGAAGTGGCCATCTCATTTGGAATGCTTCTCTAGTCATATGGATGATCTTGATCAGCACAGTTTTCATGAAGGGAAATTTGTGCTCTCGTTTCTAGCCTGGATTGGTCAACAAACAAGAGGAACCAAAGCACCAGCGAACCAAGATGTTATACTGTGTGTGCTCTTGGATTTGTGTGGTGGCCAAAGCTGGACTCTGGTTGGTTGTGTGCAGTAACCATCATTGCTTTTGTCAAAACAATTTATGATCAGAAACGAAGAGAGGAGAAAGTATTCGTTTGGTGAAGTAACTGATGAAGGACAAGTCCAGTCGGCGGTGGCTATGAAGATGAAGAAAGGTATGAGCACCTTCAAAAATGATCCTCTCAAGCACATTGAGCTTCACCACGCGGTGTTCAAGGGGTGCACCGTTGTCGGCAACCATTCCGACGTTGATGGAGCAGCAAGCACCGTCAGAAGATGCAGTTCAGTGG-CAAACAGTAGATGTTGCTCAGCTCACAGCCGCTTACAGGCCTCCATGCCATCTCCAAT-ACACCTCAAACTACGACAAGGGATAAGGGAG-ATAGGGCAGTCACTGGAAGTGCTGCTTCAGAGGGGTCTTCAAAGAAGTCCTAGCGACTCCACCGGGTAGGCCCTAAAAAGGCTTAAAGCCCTACGAATGGAGTCGATGGAGAGCCGTGCAAGGGAGGCAGCCGAAGCGAAGTCCAAAGGGGTTGAGGCATGCCTGGAGTTGGTTGAAAATGATGGTCACCGTATTACCGGTCCAGTGTGGTACACTACTTGTCGTTTATTCCAAAGTCCACACCATTGCGCATGCTTCATTAGAATCCCGACAGCAGCAACTCGCGTAGATTATATCTAGGTGATGTCACAAGGTGGTTCTGGTTCTAGTGCTGCAGGTTCCTCAGGTGGTGGCAAATAAAGGATGAGCTCGTCTGTTCCATTGTAGTTGTATTTGCTTGATCAACAATGTAGAA--TTTTTTTTCCAAATAATCCTTTCATTATTTGTGCTCGTGAGTTTGAGTTTGAGTTTGAGTTTGTGCAACATCTGCGGAGTTAACATTTCATATTTGTGTGAATTCAATTTTTTTATAATTCATTTGTGTGCCAAAAAAAAAAAAAAA] [+] EMBL AK119420 [CACAGAAATATCCGCCCCAAATCATTTCCCGCAACAGCAGCCAGCCAGCTGTTCGTCCTAGGGTCATGCGCGGCGCCGCGTACGACTAGGGGACGCGCGCGCCTGCCATGGCCGCGCCCGCAGCCGCCTGCGACCTCCGCTTCCTCCTTGTGGGGTTGTTGTTGGTGGTGGTGGTGGGATCCCGCCTCGTACGGCCCCCCGATGGCGGCGGCATTCCGACGACGCTGGACGGCCCGTTCGAGCCGGCGACGCGGGCGTTCGACCGCGCGCTCCAGCAGGGGAGCGACGACGTGCCGCTCACCGACCCGCGCCTCGCGCCGCGCGCGCGGCCCCCCGCGCCCGAGCAGATCGCGCTCGCCGCCTCCTCCGACGCCACCTCGGTCTGGGTGTCGTGGGTCACCGGCGAGGCGCAGGTGGGATCCCACCTCACCCCGCTCGACCCGTCCACCGTCCGCAGCGAGGTCTGGTACAGCGAGAGGCCCTCCCCGACGGCCGCCGCCGCCGGCGACGTCTCCGGCCACTACCCGCACGTGGCGAGGGGGAAGGCGGAGGTGTACAGCCAGCTCTACCCGTACCCAGGCCTCCTCAACTACACCTCGGGCGCCATCCACCACGTCCGCCTCCGGGGCCTCAGGCCGGCCACGCGCTACTACTACCGCTGCGGCGACAGCTCCGTCCGCGGCGGCGCGGGGCTCAGCGGCGAGCTATCCTTCGAGACGCTCCCCTCCTCCGCCGCCGCGGCGTACCCTCGCCGGGTGGCGGTGGTGGGGGACCTGGGGCTGACCGGCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGGTCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCCCCTGCTTCTCCTGCTCCTTCCCCGACGCGCCGCTCCGGGAATCCTACCAACCGCGATGGGATGGCTGGGGAAGGTTCATGGAGCCGCTCACTTCGAGGATCCCAATGATGGTGATCGAAGGGAACCATGAGATCGAACCACAGGGACAAGGTGGAGCGGTGACCTTTGCATCCTACCTGGCAAGATTCGCCGTTCCATCCGAGGAGTCTGGCTCTAACACCAAGTTCTACTACTCGTTCAATGCCGGGGGCATCCATTTCATCATGCTCGGTGCCTACGTCGACTACAACCGGACAGGAGCCCAGTACTCGTGGTTAGAGAAGGATCTGCGAAAGATTGATCGACGAGTCACACCTTGGGTTGTGGCTGCTTGGCACCCGCCCTGGTATAACAGCTATTCCTCGCACTACCAGGAATTTGAGTGCATGAGACAAGCAATGGAAGGGCTCTTGTACCAACATGGTGTCGACATTGTCCTTTCAGGGCATGTGCATGCTTATGAGAGGATGAACCGGGTGTTCAACTATACTCTCGACCCCTGTGGGCCGGTCTACATTACCATTGGAGATGGAGGGAACATTGAGAAGATTGATATCGATCATGCTGATGATCCTGGAAAATGTCCCGGTCCTGGTGACAACCACCCTGAATTTGGTAGAGTCTGCCATCTCAACTTCACCTCTGGTCCTGCCAAGGGGAAATTTTGCTGGGAGAAACAGCCGGAGTGGAGCGCGTTCAGGGAGAGCAGTTTCGGACATGGCATCCTAGAGGTGGTTAATTCTACATATGCATTATGGACATGGCACCGTAACCAGGATGCATATGGAGAAGACAGCGTGGGGGATCAAATCTATATAGTTCGGCAACCGGACAAATGCTTGCTTCAGACTACGAGTGCGTCGTCTGAAAACAACTGTCCCTCTGAAGGATGCCCTTCTCTAGTGAGCAACAGTGACTACGGTGCACAGAAGGATATTATTAGAAGTGGCCATCTCATTTGGAATGCTTCTCTAGTCATATGGATGATCTTGATCAGCACAGTTTTCATGAAGGGAAATTTGTGCTCTCGTTTCTAGCCTGGATTGGTCAACAAACAAGAGGAACCAAAGCACCAGCGAACCAAGATGTTATACTGTGTGTGCTCTTGGATTTGTGTGGTGGCCAAAGCTGGACTCTGGTTGGTTGTGTGCAGTAACCATCATTGCTTTTGTCAAAACAATTTATGATCAGAAACGAAGAGAGGAGAAAGTATTCGTTTGGTGAAGTAACTGATGAAGGACAAGTCCAGTCGGCGGTGGCTATGAAGATGAAGAAAGGTATGAGCACCTTCAAAAATGATCCTCTCAAGCACATTGAGCTTCACCACGCGGTGTTCAAGGGGTGCACCGTTGTCGGCAACCATTCCGACGTTGATGGAGCAGCAAGCACCGTCAGAAGATGCAGTTCAGTGG CAAACAGTAGATGTTGCTCAGCTCACAGCCGCTTACAGGCCTCCATGCCATCTCCAAT ACACCTCAAACTACGACAAGGGATAAGGGAG ATAGGGCAGTCACTGGAAGTGCTGCTTCAGAGGGGTCTTCAAAGAAGTCCTAGCGACTCCACCGGGTAGGCCCTAAAAAGGCTTAAAGCCCTACGAATGGAGTCGATGGAGAGCCGTGCAAGGGAGGCAGCCGAAGCGAAGTCCAAAGGGGTTGAGGCATGCCTGGAGTTGGTTGAAAATGATGGTCACCGTATTACCGGTCCAGTGTGGTACACTACTTGTCGTTTATTCCAAAGTCCACACCATTGCGCATGCTTCATTAGAATCCCGACAGCAGCAACTCGCGTAGATTATATCTAGGTGATGTCACAAGGTGGTTCTGGTTCTAGTGCTGCAGGTTCCTCAGGTGGTGGCAAATAAAGGATGAGCTCGTCTGTTCCATTGTAGTTGTATTTGCTTGATCAACAATGTAGAA TTTTTTTTCCAAATAATCCTTTCATTATTTGTGCTCGTGAGTTTGAGTTTGAGTTTGAGTTTGTGCAACATCTGCGGAGTTAACATTTCATATTTGTGTGAATTCA ] [-] EMBL CA760310 [ cCAGTTCAGTGGCCAACCCGTAGATGTTGCTCAGGTTACAGCCGCTTACAGGCCTCCATGCCATCTCCAATAACCCCTCCAACTATGACAAGGGATAA GGAGCATAGGGCAGTCACTGGAAGTCTTGCTTCAGAGGGATCTTCAAAGAAGTCCTAGCGCCTCCACCGGGTAGGCCCTAAAAAGGCTTAAAGCCCTCCGAATGGAGTCGATGGAGACCCGTGCAAGGGAGGCAGCCGAAGCGAAGTCCAAAGGGGTTGAGGCATGCCTGGAGTTGGTTGAAAATGATGGTCACCATATTACCGGTCCAGTGTGGTACACTACTTGTCGTTTATTCCAAAGTCCACACCATTGCGCATGCTTCATTAGAATCCCGACAGCAGCAACTCGCGTAGATTATATCTAGGTGATGTCACAAGGTGGTTCTGGTTCTAGTGCTGCAGGTTCCTCAGGTGGTGGCAAATAAAGGATGAGCTCGTCTGTTCCATTGTAGTTGTATTTGCTTGATCAGCAATGTAGAAATTTTTTTTTCCAAATAATCCTTTCATTATTTGTGCTCGTGAGTTTGAGTTTGAGTTTGAGTTTGTGCAACATTTGCGGAGTTAACATTTCATATTTGTGTGAATTCAATTTTTTTATAATTCATTTGTGTGCCAAAAAAAAAAAAAAA] consensusID : consensus_7516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2314 fasta sequence [GCCAGCTGTTCGTCCTAGGGTCATGCGCGGCGCCGCGTACGACTAGGGGACGCGCGCGCCTGCCATGGCCGCGCCCGCAGCCGCCTGCGACCTCCGCTTCCTCCTTGTGGGGTTGTTGTTGGTGGTGGTGGTGGGATCCCGCCTCGTACGGCCCCCCGATGGCGGCGGCATTCCGACGACGCTGGACGGCCCGTTCGAGCCGGCGACGCGGGCGTTCGACCGCGCGCTCCGGCAGGGGAGCGACGACGTGCCGCTCACCGACCCGCGCCTCGCGCCGCGCGCGCGGCCCCCCGCGCCCGAGCAGATCGCGCTCGCCGCCTCCTCCGACGCCACCTCGGTCTGGGTGTCGTGGGTCACCGGCGAGGCGCAGGTGGGATCCCACCTCACCCCGCTCGACCCGTCCACCGTCCGCAGCGAGGTCTGGTACAGCGAGAGGCCCTCCCCGACGGCCGCCGCCGCCGGCGACGTCTCCGGCCACTACCCGCACGTGGCGAGGGGGAAGGCGGAGGTGTACAGCCAGCTCTACCCGTACCCAGGCCTCCTCAACTACACCTCGGGCGCCATCCACCACGTCCGCCTCCGGGGCCTCAGGCCGGCCACGCGCTACTACTACCGCTGCGGCGACAGCTCCGTCCGCGGCGGCGCGGGGCTCAGCGGCGAGCTATCCTTCGAGACGCTCCCCTCCTCCGCCGCCGCGGCGTACCCTCGCCGGGTGGCGGTGGTGGGGGACCTGGGGCTGACCGGCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGGTCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCCCCTGCTTCTCCTGCTCCTTCCCCGACGCGCCGCTCCGGGAATCCTACCAACCGCGATGGGATGGCTGGGGAAGGTTCATGGAGCCGCTCACTTCGAGGATCCCAATGATGGTGATCGAAGGGAACCATGAGATCGAACCACAGGGACAAGGTGGAGCGGTGACCTTTGCATCCTACCTGGCAAGATTCGCCGTTCCATCCGAGGAGTCTGGCTCTAACACCAAGTTCTACTACTCGTTCAATGCCGGGGGCATCCATTTCATCATGCTCGGTGCCTACGTCGACTACAACCGGACAGGAGCCCAGTACTCGTGGTTAGAGAAGGATCTGCGAAAGATTGATCGACGAGTCACACCTTGGGTTGTGGCTGCTTGGCACCCGCCCTGGTATAACAGCTATTCCTCGCACTACCAGGAATTTGAGTGCATGAGACAAGCAATGGAAGGGCTCTTGTACCAACATGGTGTCGACATTGTCTTTTCAGGGCATGTGCATGCTTATGAGAGGATGAACCGGGTGTTCAACTATACTCTCGACCCCTGTGGGCCGGTCTACATTACCATTGGAGATGGAGGGAACATTGAGAAGATTGATATCGATCATGCTGATGATCCTGGAAAATGTCCCGGTCCTGGTGACAACCACCCTGAATTTGGTGGAGTCTGCCATCTCAACTTCACCTCTGGTCCTGCCAAGGGGAAATTTTGCTGGGAGAAACAGCCGGAGTGGAGCGCGTTCAGGGAGAGCAGTTTCGGACATGGCATCCTAGAGGTGGTTAATTCTACATATGCATTATGGACATGGCACCGTAACCAGGATGCATATGGAGAAGACAGCGTGGGGGATCAAATCTATATAGTTCGGCAACCGGACAAATGCTTGCTTCAGACTACGAGTGCGTCGTCTGAAAACAACTGTCCCTCTGAAGGATGCCCTTCTCTAGTGAGCAACAGTGGCTACGGTGCACAGAAGGATATTATTAGAAGTGGCCATCTCATTTGGAATGCTTCTCTAGTCATATGGATGATCTTGATCAGCACAGTTTTCATGAAGGGAAATTTGTGCTCTCGTTTCTAGCCTGGATTGGTCAACAAACAAGAGGAACCAAAGCACCAGCGAACCAAGATGTTATACTGTGTGTGCTCTTGGATTTGTGTGATGGCCAAAGCTGGACTCTGGTTGGTTGTGTGCAGTAACCATCATTGCTTTTGGTAGTACATACTCCTACATCTACATGAGTTTATGAAATAGTCGTCGGCTTTTATTTACTCAATTGTCAGTGCTGACCATGTTTCCATGAACACGCTGATGCAACTAACTCCTTTTTCTATCTAAAGTAGAATGGTCCAAATAACCAAATGCCTTGAAATGGGTGTAGTGTGGTGTATTTGTTTTTGTTGTTTGAAAGAACAGTGTAGAGGTTTCTATTGGAGTATATACTACTGCAACAACTAGAAG] [+] EMBL AK072150 [GCCAGCTGTTCGTCCTAGGGTCATGCGCGGCGCCGCGTACGACTAGGGGACGCGCGCGCCTGCCATGGCCGCGCCCGCAGCCGCCTGCGACCTCCGCTTCCTCCTTGTGGGGTTGTTGTTGGTGGTGGTGGTGGGATCCCGCCTCGTACGGCCCCCCGATGGCGGCGGCATTCCGACGACGCTGGACGGCCCGTTCGAGCCGGCGACGCGGGCGTTCGACCGCGCGCTCCGGCAGGGGAGCGACGACGTGCCGCTCACCGACCCGCGCCTCGCGCCGCGCGCGCGGCCCCCCGCGCCCGAGCAGATCGCGCTCGCCGCCTCCTCCGACGCCACCTCGGTCTGGGTGTCGTGGGTCACCGGCGAGGCGCAGGTGGGATCCCACCTCACCCCGCTCGACCCGTCCACCGTCCGCAGCGAGGTCTGGTACAGCGAGAGGCCCTCCCCGACGGCCGCCGCCGCCGGCGACGTCTCCGGCCACTACCCGCACGTGGCGAGGGGGAAGGCGGAGGTGTACAGCCAGCTCTACCCGTACCCAGGCCTCCTCAACTACACCTCGGGCGCCATCCACCACGTCCGCCTCCGGGGCCTCAGGCCGGCCACGCGCTACTACTACCGCTGCGGCGACAGCTCCGTCCGCGGCGGCGCGGGGCTCAGCGGCGAGCTATCCTTCGAGACGCTCCCCTCCTCCGCCGCCGCGGCGTACCCTCGCCGGGTGGCGGTGGTGGGGGACCTGGGGCTGACCGGCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGGTCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCCCCTGCTTCTCCTGCTCCTTCCCCGACGCGCCGCTCCGGGAATCCTACCAACCGCGATGGGATGGCTGGGGAAGGTTCATGGAGCCGCTCACTTCGAGGATCCCAATGATGGTGATCGAAGGGAACCATGAGATCGAACCACAGGGACAAGGTGGAGCGGTGACCTTTGCATCCTACCTGGCAAGATTCGCCGTTCCATCCGAGGAGTCTGGCTCTAACACCAAGTTCTACTACTCGTTCAATGCCGGGGGCATCCATTTCATCATGCTCGGTGCCTACGTCGACTACAACCGGACAGGAGCCCAGTACTCGTGGTTAGAGAAGGATCTGCGAAAGATTGATCGACGAGTCACACCTTGGGTTGTGGCTGCTTGGCACCCGCCCTGGTATAACAGCTATTCCTCGCACTACCAGGAATTTGAGTGCATGAGACAAGCAATGGAAGGGCTCTTGTACCAACATGGTGTCGACATTGTCTTTTCAGGGCATGTGCATGCTTATGAGAGGATGAACCGGGTGTTCAACTATACTCTCGACCCCTGTGGGCCGGTCTACATTACCATTGGAGATGGAGGGAACATTGAGAAGATTGATATCGATCATGCTGATGATCCTGGAAAATGTCCCGGTCCTGGTGACAACCACCCTGAATTTGGTGGAGTCTGCCATCTCAACTTCACCTCTGGTCCTGCCAAGGGGAAATTTTGCTGGGAGAAACAGCCGGAGTGGAGCGCGTTCAGGGAGAGCAGTTTCGGACATGGCATCCTAGAGGTGGTTAATTCTACATATGCATTATGGACATGGCACCGTAACCAGGATGCATATGGAGAAGACAGCGTGGGGGATCAAATCTATATAGTTCGGCAACCGGACAAATGCTTGCTTCAGACTACGAGTGCGTCGTCTGAAAACAACTGTCCCTCTGAAGGATGCCCTTCTCTAGTGAGCAACAGTGGCTACGGTGCACAGAAGGATATTATTAGAAGTGGCCATCTCATTTGGAATGCTTCTCTAGTCATATGGATGATCTTGATCAGCACAGTTTTCATGAAGGGAAATTTGTGCTCTCGTTTCTAGCCTGGATTGGTCAACAAACAAGAGGAACCAAAGCACCAGCGAACCAAGATGTTATACTGTGTGTGCTCTTGGATTTGTGTGATGGCCAAAGCTGGACTCTGGTTGGTTGTGTGCAGTAACCATCATTGCTTTTGGTAGTACATACTCCTACATCTACATGAGTTTATGAAATAGTCGTCGGCTTTTATTTACTCAATTGTCAGTGCTGACCATGTTTCCATGAACACGCTGATGCAACTAACTCCTTTTTCTATCTAAAGTAGAATGGTCCAAATAACCAAATGCCTTGAAATGGGTGTAGTGTGGTGTATTTGTTTTTGTTGTTTGAAAGAACAGTGTAGAGGTTTCTATTGGAGTATATACTACTGCAACAACTAGAAG] consensusID : consensus_7516#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [GCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGGTCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCCCCTGCTTCTCCTGCTCCTTTCCTGTCTCGCCGCTCCGGGAATCCTACCAACCGCGATGGGATTTCTGTTGAAGGAATTTTTCTTTCAGAGGGGAAGTTGCTTTCATTACGTTAAAAGGGGAAAATTTGCAAAATACTACCGCAAAAATACATGGGTTTGCATAATAGCAGATTCAGATGATCCAAATTCTTGTACATTGGAATGACATGTTGGTACTTGAACCACTTGTCAATGACACATACCGGTTCTAGCTACGTAATATTTTGATCCTATTAACAAAATTACCAAATTAAAAAAGAAATCCTAAATAAATGGATTTAAATTGCTTCGTTTTTCAAGTCAGACTTTTGTATATTTTTTAAGGAAGTTTGACTTTTTTAGTTAGCATACACGCAATTGGAAATCAAGAACTTCTGACAAATTTCAAACAAGAAAGCGGGTGAAATTATCCTTGGACTCTGCTTATATAAAGTTTAACTGAAAACATTTGTATGGATTCAGGTTCATGG] [+] EMBL CF305915 [GCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGGTCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCCCCTGCTTCTCCTGCTCCTTTCCTGTCTCGCCGCTCCGGGAATCCTACCAACCGCGATGGGATTTCTGTTGAAGGAATTTTTCTTTCAGAGGGGAAGTTGCTTTCATTACGTTAAAAGGGGAAAATTTGCAAAATACTACCGCAAAAATACATGGGTTTGCATAATAGCAGATTCAGATGATCCAAATTCTTGTACATTGGAATGACATGTTGGTACTTGAACCACTTGTCAATGACACATACCGGTTCTAGCTACGTAATATTTTGATCCTATTAACAAAATTACCAAATTAAAAAAGAAATCCTAAATAAATGGATTTAAATTGCTTCGTTTTTCAAGTCAGACTTTTGTATATTTTTTAAGGAAGTTTGACTTTTTTAGTTAGCATACACGCAATTGGAAATCAAGAACTTCTGACAAATTTCAAACAAGAAAGCGGGTGAAATTATCCTTGGACTCTGCTTATATAAAGTTTAACTGAAAACATTTGTATGGATTCAGGTTCATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7516#0 CACAGAAATATCCGCCCCAAATCATTTCCCGCAACAGCAGCCAGCCAGCTGTTCGTCCTA 60 consensus_7516#1 -------------------------------------------GCCAGCTGTTCGTCCTA 17 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GGGTCATGCGCGGCGCCGCGTACGACTAGGGGACGCGCGCGCCTGCCATGGCCGCGCCCG 120 consensus_7516#1 GGGTCATGCGCGGCGCCGCGTACGACTAGGGGACGCGCGCGCCTGCCATGGCCGCGCCCG 77 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CAGCCGCCTGCGACCTCCGCTTCCTCCTTGTGGGGTTGTTGTTGGTGGTGGTGGTGGGAT 180 consensus_7516#1 CAGCCGCCTGCGACCTCCGCTTCCTCCTTGTGGGGTTGTTGTTGGTGGTGGTGGTGGGAT 137 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CCCGCCTCGTACGGCCCCCCGATGGCGGCGGCATTCCGACGACGCTGGACGGCCCGTTCG 240 consensus_7516#1 CCCGCCTCGTACGGCCCCCCGATGGCGGCGGCATTCCGACGACGCTGGACGGCCCGTTCG 197 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 AGCCGGCGACGCGGGCGTTCGACCGCGCGCTCCAGCAGGGGAGCGACGACGTGCCGCTCA 300 consensus_7516#1 AGCCGGCGACGCGGGCGTTCGACCGCGCGCTCCGGCAGGGGAGCGACGACGTGCCGCTCA 257 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CCGACCCGCGCCTCGCGCCGCGCGCGCGGCCCCCCGCGCCCGAGCAGATCGCGCTCGCCG 360 consensus_7516#1 CCGACCCGCGCCTCGCGCCGCGCGCGCGGCCCCCCGCGCCCGAGCAGATCGCGCTCGCCG 317 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CCTCCTCCGACGCCACCTCGGTCTGGGTGTCGTGGGTCACCGGCGAGGCGCAGGTGGGAT 420 consensus_7516#1 CCTCCTCCGACGCCACCTCGGTCTGGGTGTCGTGGGTCACCGGCGAGGCGCAGGTGGGAT 377 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CCCACCTCACCCCGCTCGACCCGTCCACCGTCCGCAGCGAGGTCTGGTACAGCGAGAGGC 480 consensus_7516#1 CCCACCTCACCCCGCTCGACCCGTCCACCGTCCGCAGCGAGGTCTGGTACAGCGAGAGGC 437 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CCTCCCCGACGGCCGCCGCCGCCGGCGACGTCTCCGGCCACTACCCGCACGTGGCGAGGG 540 consensus_7516#1 CCTCCCCGACGGCCGCCGCCGCCGGCGACGTCTCCGGCCACTACCCGCACGTGGCGAGGG 497 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GGAAGGCGGAGGTGTACAGCCAGCTCTACCCGTACCCAGGCCTCCTCAACTACACCTCGG 600 consensus_7516#1 GGAAGGCGGAGGTGTACAGCCAGCTCTACCCGTACCCAGGCCTCCTCAACTACACCTCGG 557 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GCGCCATCCACCACGTCCGCCTCCGGGGCCTCAGGCCGGCCACGCGCTACTACTACCGCT 660 consensus_7516#1 GCGCCATCCACCACGTCCGCCTCCGGGGCCTCAGGCCGGCCACGCGCTACTACTACCGCT 617 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GCGGCGACAGCTCCGTCCGCGGCGGCGCGGGGCTCAGCGGCGAGCTATCCTTCGAGACGC 720 consensus_7516#1 GCGGCGACAGCTCCGTCCGCGGCGGCGCGGGGCTCAGCGGCGAGCTATCCTTCGAGACGC 677 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TCCCCTCCTCCGCCGCCGCGGCGTACCCTCGCCGGGTGGCGGTGGTGGGGGACCTGGGGC 780 consensus_7516#1 TCCCCTCCTCCGCCGCCGCGGCGTACCCTCGCCGGGTGGCGGTGGTGGGGGACCTGGGGC 737 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TGACCGGCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGG 840 consensus_7516#1 TGACCGGCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGG 797 consensus_7516#2 ------GCAACTCGACGTCCACCGTCGAACACCTCGCCCGCAACGACCCGTCGCTGGTGG 54 ****************************************************** consensus_7516#0 TCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCC 900 consensus_7516#1 TCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCC 857 consensus_7516#2 TCGTGGTCGGCGACATGACCTACGCCAACCAGTACCGCACCACCGGCGGCAGAGGCGTCC 114 ************************************************************ consensus_7516#0 CCTGCTTCTCCTGCTCCTTCCCCGACGCGCCGCTCCGGGAATCCTACCAACCGCGATGGG 960 consensus_7516#1 CCTGCTTCTCCTGCTCCTTCCCCGACGCGCCGCTCCGGGAATCCTACCAACCGCGATGGG 917 consensus_7516#2 CCTGCTTCTCCTGCTCCTTTCCTGTCTCGCCGCTCCGGGAATCCTACCAACCGCGATGGG 174 ******************* ** * * ********************************* consensus_7516#0 ATGGCTGGGGAAGGTTCATGGAGCCGCTCACTTCGAGGATCCCAATGATGGTGATCGAAG 1020 consensus_7516#1 ATGGCTGGGGAAGGTTCATGGAGCCGCTCACTTCGAGGATCCCAATGATGGTGATCGAAG 977 consensus_7516#2 ATTTCTGTTGAAGGAATTT---TTCTTTCAGAGGGGAAGTTGCTTTCATTACGTTAAAAG 231 ** *** ***** * * *** * * * * ** * * *** consensus_7516#0 GGAACCATGAGATCGAACCACAGGGACAAGGTGGAGCGGTGACCTTTGCATCCTACCTGG 1080 consensus_7516#1 GGAACCATGAGATCGAACCACAGGGACAAGGTGGAGCGGTGACCTTTGCATCCTACCTGG 1037 consensus_7516#2 GGGAAAATTTG-CAAAATACTACCGCAAAAATACATGGGTTTGCATAATAGCAGATTCAG 290 ** * ** * ** * * ** * * *** * * * * * * consensus_7516#0 CAAGATTCGCCGTTCCATCCGA-GGAGTCTGGCTCTAACACCAAGTTCTACTACTCGTTC 1139 consensus_7516#1 CAAGATTCGCCGTTCCATCCGA-GGAGTCTGGCTCTAACACCAAGTTCTACTACTCGTTC 1096 consensus_7516#2 -ATGATCCAAATTCTTGTACATTGGAATGACATGTTGGTACTT-GAACCACTTGTCAATG 348 * *** * * * * *** * * ** * * *** ** * consensus_7516#0 AATGCCGGGGGCATCCATTTCATCATGCTCGGTGCCTACGTCGACTACAACCGGACAGGA 1199 consensus_7516#1 AATGCCGGGGGCATCCATTTCATCATGCTCGGTGCCTACGTCGACTACAACCGGACAGGA 1156 consensus_7516#2 ACACATACCGGTTCTAGCTACGTAATATTTTGATCCTATTAACAAAATTACCAAATTAAA 408 * ** * * * ** * * **** * * *** * * consensus_7516#0 GCCCAGTACTCGTGGTTAGAGAAGGATCTGCGAAAGATTGATCGACGAGTCACACCTTGG 1259 consensus_7516#1 GCCCAGTACTCGTGGTTAGAGAAGGATCTGCGAAAGATTGATCGACGAGTCACACCTTGG 1216 consensus_7516#2 A--AAGAAATCCTAAATAAAT--GGATTTAAATTGCTTCGTTTTTCAAGTCAGACTTT-- 462 ** * ** * ** * **** * * * * * ***** ** ** consensus_7516#0 GTTGTGGCTGCTTGGCACCCGCCCTGGTATAACAGCTATTCCTCGCACTACCAGGAATTT 1319 consensus_7516#1 GTTGTGGCTGCTTGGCACCCGCCCTGGTATAACAGCTATTCCTCGCACTACCAGGAATTT 1276 consensus_7516#2 --TGTATATTTTTTAAGGAAGTTTGACTTTTTTAGTTAGCATACACGCAATT-GGAAATC 519 *** * ** * * * ** ** * * * * **** * consensus_7516#0 GAGTGCATGAGACAAGCAATGGAAGGGCTCTTGTACCAACATGGTGTCGACATTGTCCTT 1379 consensus_7516#1 GAGTGCATGAGACAAGCAATGGAAGGGCTCTTGTACCAACATGGTGTCGACATTGTCTTT 1336 consensus_7516#2 AAGAACTTCTGACAAA------------TTTCAAACAAGAAAGCGGGTGAAATTATCCTT 567 ** * * ***** * * ** * * * * ** *** ** ** consensus_7516#0 TCAGGGCATGTGCATGCTTATGAGAGGATGAACCGGGTGTTCAACTATACTCTCGACCCC 1439 consensus_7516#1 TCAGGGCATGTGCATGCTTATGAGAGGATGAACCGGGTGTTCAACTATACTCTCGACCCC 1396 consensus_7516#2 ---GGACTC-----TGCTTATATAAAGTTTAACTGAAAACATTTGTATGGATTCAGGTTC 619 ** * ******* * * * *** * *** ** * consensus_7516#0 TGTGGGCCGGTCTACATTACCATTGGAGATGGAGGGAACATTGAGAAGATTGATATCGAT 1499 consensus_7516#1 TGTGGGCCGGTCTACATTACCATTGGAGATGGAGGGAACATTGAGAAGATTGATATCGAT 1456 consensus_7516#2 -ATGG------------------------------------------------------- 623 *** consensus_7516#0 CATGCTGATGATCCTGGAAAATGTCCCGGTCCTGGTGACAACCACCCTGAATTTGGTAGA 1559 consensus_7516#1 CATGCTGATGATCCTGGAAAATGTCCCGGTCCTGGTGACAACCACCCTGAATTTGGTGGA 1516 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GTCTGCCATCTCAACTTCACCTCTGGTCCTGCCAAGGGGAAATTTTGCTGGGAGAAACAG 1619 consensus_7516#1 GTCTGCCATCTCAACTTCACCTCTGGTCCTGCCAAGGGGAAATTTTGCTGGGAGAAACAG 1576 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CCGGAGTGGAGCGCGTTCAGGGAGAGCAGTTTCGGACATGGCATCCTAGAGGTGGTTAAT 1679 consensus_7516#1 CCGGAGTGGAGCGCGTTCAGGGAGAGCAGTTTCGGACATGGCATCCTAGAGGTGGTTAAT 1636 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TCTACATATGCATTATGGACATGGCACCGTAACCAGGATGCATATGGAGAAGACAGCGTG 1739 consensus_7516#1 TCTACATATGCATTATGGACATGGCACCGTAACCAGGATGCATATGGAGAAGACAGCGTG 1696 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GGGGATCAAATCTATATAGTTCGGCAACCGGACAAATGCTTGCTTCAGACTACGAGTGCG 1799 consensus_7516#1 GGGGATCAAATCTATATAGTTCGGCAACCGGACAAATGCTTGCTTCAGACTACGAGTGCG 1756 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TCGTCTGAAAACAACTGTCCCTCTGAAGGATGCCCTTCTCTAGTGAGCAACAGTGACTAC 1859 consensus_7516#1 TCGTCTGAAAACAACTGTCCCTCTGAAGGATGCCCTTCTCTAGTGAGCAACAGTGGCTAC 1816 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GGTGCACAGAAGGATATTATTAGAAGTGGCCATCTCATTTGGAATGCTTCTCTAGTCATA 1919 consensus_7516#1 GGTGCACAGAAGGATATTATTAGAAGTGGCCATCTCATTTGGAATGCTTCTCTAGTCATA 1876 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TGGATGATCTTGATCAGCACAGTTTTCATGAAGGGAAATTTGTGCTCTCGTTTCTAGCCT 1979 consensus_7516#1 TGGATGATCTTGATCAGCACAGTTTTCATGAAGGGAAATTTGTGCTCTCGTTTCTAGCCT 1936 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GGATTGGTCAACAAACAAGAGGAACCAAAGCACCAGCGAACCAAGATGTTATACTGTGTG 2039 consensus_7516#1 GGATTGGTCAACAAACAAGAGGAACCAAAGCACCAGCGAACCAAGATGTTATACTGTGTG 1996 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TGCTCTTGGATTTGTGTGGTGGCCAAAGCTGGACTCTGGTTGGTTGTGTGCAGTAACCAT 2099 consensus_7516#1 TGCTCTTGGATTTGTGTGATGGCCAAAGCTGGACTCTGGTTGGTTGTGTGCAGTAACCAT 2056 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CATTGCTTTTGTCAAAACA-ATTTATGATCAGAAACGAAGAGAGGAGAAAGTATTCG--T 2156 consensus_7516#1 CATTGCTTTTGGTAGTACATACTCCTACATCTACATGAGTTTATGAAATAGTCGTCGGCT 2116 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TTGGTGAAGTAACTGATGAAGGACAAGTCCAGTCGGCGGTGGCTATGAAGATGAAGAAAG 2216 consensus_7516#1 TTTATTTACTCAATTGTCAGTGCTGA--CCATGTTTCCATGAACACGCTGATGCAACTAA 2174 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GTATGAGCACCTTCAAAAATGATCCTCTCAAGCACATTGAGCTTCACCACGCGGTGTTCA 2276 consensus_7516#1 CTCCTTTTTCTATCTAAAGTAGAATGGTCCAAATAACCAAATGCCTTGAAATGGGTGTAG 2234 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 AGGGGTGCACCGTTGTCGGCAACCATTCCGACGTTGATGGAGCAGCAAGCACCGTCAGAA 2336 consensus_7516#1 TGTGGTGTATTTGTTTTTGT---TGTTTGAAAG--AACAGTGTAGAGGTTTCTATTGGAG 2289 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GATGCAGTTCAGTGGCAAACAGTAGATGTTGCTCAGCTCACAGCCGCTTACAGGCCTCCA 2396 consensus_7516#1 TATATACTACTGCAACAACTAGAAG----------------------------------- 2314 consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TGCCATCTCCAATACACCTCAAACTACGACAAGGGATAAGGGAGATAGGGCAGTCACTGG 2456 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 AAGTGCTGCTTCAGAGGGGTCTTCAAAGAAGTCCTAGCGACTCCACCGGGTAGGCCCTAA 2516 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 AAAGGCTTAAAGCCCTACGAATGGAGTCGATGGAGAGCCGTGCAAGGGAGGCAGCCGAAG 2576 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CGAAGTCCAAAGGGGTTGAGGCATGCCTGGAGTTGGTTGAAAATGATGGTCACCGTATTA 2636 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 CCGGTCCAGTGTGGTACACTACTTGTCGTTTATTCCAAAGTCCACACCATTGCGCATGCT 2696 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TCATTAGAATCCCGACAGCAGCAACTCGCGTAGATTATATCTAGGTGATGTCACAAGGTG 2756 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 GTTCTGGTTCTAGTGCTGCAGGTTCCTCAGGTGGTGGCAAATAAAGGATGAGCTCGTCTG 2816 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TTCCATTGTAGTTGTATTTGCTTGATCAACAATGTAGAATTTTTTTTCCAAATAATCCTT 2876 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 TCATTATTTGTGCTCGTGAGTTTGAGTTTGAGTTTGAGTTTGTGCAACATCTGCGGAGTT 2936 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 AACATTTCATATTTGTGTGAATTCAATTTTTTTATAATTCATTTGTGTGCCAAAAAAAAA 2996 consensus_7516#1 ------------------------------------------------------------ consensus_7516#2 ------------------------------------------------------------ consensus_7516#0 AAAAAA 3002 consensus_7516#1 ------ consensus_7516#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||