Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7521 cluster # 7521       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7521#0 length = 1632 sequences # 4  

consensusID : consensus_7521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1632
fasta sequence
                              [TTATCCTCTTCTTCCTCCACATGCCTCGAAGTTTAGCCCATCCCCGATCGCCGCACCATCATGGTCCAAGAATTCTTGCTCATATCGCCGTGCAACGTCTGAAGAGGTGTTCAATCCGGACGAACAAGATGCAGCAGAGCCGGCAGGACGTGGACGAGCATGTCGCCGAGCTCCGCGGCGAGCTGCGCAAGGCGCGCGAGGAGCGAGACCGCGCGTACCGCGTCCTGGAGGTGAGCGAGTGGAAGGCGCTGGCGTCGGCCAACGACCGCACCACCATAGAGACGCTCGAGGCGGAGCTCGACGCGTCCAGGGAGTCCGAGAAGCGGATGCTCGAGTCCCTGGCGATGCAGACGAAGCAGCTCGAGATGACCAAGATCGAGCTCGAGGAGGCCAGGCTGGAGAACGCGTCGCTGCGTGAGACCATCCAGAGGCTCGAGGCCATAGCGGTGCCCGTCGCGACGACGCCGAGAGGAAGGTACGATCGCGACTACCAGAGGGTTCACGGCGAGCTGCGGATGGCGCTGGTGGCGGAGGACAAGAACAAGAAGGCGATGGAGGAGCTGGTGCTGGCACTCAAGGAGGTGAACGGGGAGCTGCACACGACGCGGCAGCTGCTGGCGCGGTCGCAGCACGAGGCCGAGACGGCGCGGCTGGAGTCGGACCGGCTGCACGTCTCGCTCAAGCGCAAGGACGACAAGCTCCGCGCGCTGTCGGAGGAGGTGGCCAGGCTGCGCGCCGACGCCGAGGAGTCGTTCGCGGCGTGGCGGGGCAAGGAGGCCGGGTTCACGTCGTGCATGAAGTCCACCGAGTCCGAGCTCGCCGAGACGCGGCGCGAGAACGCGCGCCTCCTGGAGTCGCAGCGGTCCGGGCGGGACGAGATCGCCAAGCTGCGCGACATCCTGAGGCAGGCCGTCAAGGACACCAAGGTCGTGAAGGAGGCGCTGGAGGAGGCGAGGGGCGAGAACGCCGCGCTCAAGGAGATGCTCGGCGACAAGGACACCGCCATCAAGTGCACCAAGCAGGAGCTCGAGTGCCTCCGGGTGACGGAGGCGGCGGCGCGCGACAGCGTCAAGGAGCTGCAGAGCCTGCTCGTCGCCACGTCGTCGAGCCCCACGGCCGCCGGCATGAAGCTATCCGCGTCGCCGAGCCCCACAGCTTCCGGGATAAAGCTGGACATGGAGGATTCCTCGTCGTCGCACGGGTCGAGAGAACTGCACGGGCTGATCAAGTGCCACTCGGAGGCGAGGGTGAAGCCGCCGGCGGGGCTCACCCTACCGCGGCGGAGGTCGGATAACTTCGAAGGATCGGTGTACGACATATTCGGGTCGATGGAAGATCAGAAGAGCGAGCTAAGCGCGTTCTCGACAATGCCGAGGTCGTTG-CCCGCACGGCGGCGGGTGATGATGCGCAAGGTTGGCAGCTTGTTCCGGTTTAAGAGCTTCAGTATCAAGTAGTAGCTGCTACTGCCGAGATTCGGGGCCTGTCTTCTCTTCTCACTACCTGTTTGGGCGTGTCAGTTTTGATTGATCGGTGCTTTCTGTGTACTACTACTGGGTTTACCTTCCTTTCGCCTGATCATATCATCAGATCATGAGCTGGTAAAGTGTATACGAGTACATCATTTCATAAAAA]

[+] EMBL AK069700             [TTATCCTCTTCTTCCTCCACATGCCTCGAAGTTTAGCCCATCCCCGATCGCCGCACCATCATGGTCCAAGAATTCTTGCTCATATCGCCGTGCAACGTCTGAAGAGGTGTTCAATCCGGACGAACAAGATGCAGCAGAGCCGGCAGGACGTGGACGAGCATGTCGCCGAGCTCCGCGGCGAGCTGCGCAAGGCGCGCGAGGAGCGAGACCGCGCGTACCGCGTCCTGGAGGTGAGCGAGTGGAAGGCGCTGGCGTCGGCCAACGACCGCACCACCATAGAGACGCTCGAGGCGGAGCTCGACGCGTCCAGGGAGTCCGAGAAGCGGATGCTCGAGTCCCTGGCGATGCAGACGAAGCAGCTCGAGATGACCAAGATCGAGCTCGAGGAGGCCAGGCTGGAGAACGCGTCGCTGCGTGAGACCATCCAGAGGCTCGAGGCCATAGCGGTGCCCGTCGCGACGACGCCGAGAGGAAGGTACGATCGCGACTACCAGAGGGTTCACGGCGAGCTGCGGATGGCGCTGGTGGCGGAGGACAAGAACAAGAAGGCGATGGAGGAGCTGGTGCTGGCACTCAAGGAGGTGAACGGGGAGCTGCACACGACGCGGCAGCTGCTGGCGCGGTCGCAGCACGAGGCCGAGACGGCGCGGCTGGAGTCGGACCGGCTGCACGTCTCGCTCAAGCGCAAGGACGACAAGCTCCGCGCGCTGTCGGAGGAGGTGGCCAGGCTGCGCGCCGACGCCGAGGAGTCGTTCGCGGCGTGGCGGGGCAAGGAGGCCGGGTTCACGTCGTGCATGAAGTCCACCGAGTCCGAGCTCGCCGAGACGCGGCGCGAGAACGCGCGCCTCCTGGAGTCGCAGCGGTCCGGGCGGGACGAGATCGCCAAGCTGCGCGACATCCTGAGGCAGGCCGTCAAGGACACCAAGGTCGTGAAGGAGGCGCTGGAGGAGGCGAGGGGCGAGAACGCCGCGCTCAAGGAGATGCTCGGCGACAAGGACACCGCCATCAAGTGCACCAAGCAGGAGCTCGAGTGCCTCCGGGTGACGGAGGCGGCGGCGCGCGACAGCGTCAAGGAGCTGCAGAGCCTGCTCGTCGCCACGTCGTCGAGCCCCACGGCCGCCGGCATGAAGCTATCCGCGTCGCCGAGCCCCACAGCTTCCGGGATAAAGCTGGACATGGAGGATTCCTCGTCGTCGCACGGGTCGAGAGAACTGCACGGGCTGATCAAGTGCCACTCGGAGGCGAGGGTGAAGCCGCCGGCGGGGCTCACCCTACCGCGGCGGAGGTCGGATAACTTCGAAGGATCGGTGTACGACATATTCGGGTCGATGGAAGATCAGAAGAGCGAGCTAAGCGCGTTCTCGACAATGCCGAGGTCGTTG CCCGCACGGCGGCGGGTGATGATGCGCAAGGTTGGCAGCTTGTTCCGGTTTAAGAGCTTCAGTATCAAGTAGTAGCTGCTACTGCCGAGATTCGGGGCCTGTCTTCTCTTCTCACTACCTGTTTGGGCGTGTCAGTTTTGATTGATCGGTGCTTTCTGTGTACTACTACTGGGTTTACCTTCCTTTCGCCTGATCATATCATCAGATCATGAGCTGGTAAAGTGTATACGAGTAC               ]
[+] EMBL AK072254             [                          CGAAGTTTAGCCCATCCCCGATCGCCGCACCATCATGGTCCAAGAATTCTTGCTCATATCGCCGTGCAACGTCTGAAGAGGTGTTCAATCCGGACGAACAAGATGCAGCAGAGCCGGCAGGACGTGGACGAGCATGTCGCCGAGCTCCGCGGCGAGCTGCGCAAGGCGCGCGAGGAGCGAGACCGCGCGTACCGCGTCCTGGAGGTGAGCGAGTGGAAGGCGCTGGCGTCGGCCAACGACCGCACCACCATAGAGACGCTCGAGGCGGAGCTCGACGCGTCCAGGGAGTCCGAGAAGCGGATGCTCGAGTCCCTGGCGATGCAGACGAAGCAGCTCGAGATGACCAAGATCGAGCTCGAGGAGGCCAGGCTGGAGAACGCGTCGCTGCGTGAGACCATCCAGAGGCTCGAGGCCATAGCGGTGCCCGTCGCGACGACGCCGAGAGGAAGGTACGATCGCGACTACCAGAGGGTTCACGGCGAGCTGCGGATGGCGCTGGTGGCGGAGGACAAGAACAAGAAGGCGATGGAGGAGCTGGTGCTGGCACTCAAGGAGGTGAACGGGGAGCTGCACACGACGCGGCAGCTGCTGGCGCGGTCGCAGCACGAGGCCGAGACGGCGCGGCTGGAGTCGGACCGGCTGCACGTCTCGCTCAAGCGCAAGGACGACAAGCTCCGCGCGCTGTCGGAGGAGGTGGCCAGGCTGCGCGCCGACGCCGAGGAGTCGTTCGCGGCGTGGCGGGGCAAGGAGGCCGGGTTCACGTCGTGCATGAAGTCCACCGAGTCCGAGCTCGCCGAGACGCGGCGCGAGAACGCGCGCCTCCTGGAGTCGCAGCGGTCCGGGCGGGACGAGATCGCCAAGCTGCGCGACATCCTGAGGCAGGCCGTCAAGGACACCAAGGTCGTGAAGGAGGCGCTGGAGGAGGCGAGGGGCGAGAACGCCGCGCTCAAGGAGATGCTCGGCGACAAGGACACCGCCATCAAGTGCACCAAGCAGGAGCTCGAGTGCCTCCGGGTGACGGAGGCGGCGGCGCGCGACAGCGTCAAGGAGCTGCAGAGCCTGCTCGTCGCCACGTCGTCGAGCCCCACGGCCGCCGGCATGAAGCTATCCGCGTCGCCGAGCCCCACAGCTTCCGGGATAAAGCTGGACATGGAGGATTCCTCGTCGTCGCACGGGTCGAGAGAACTGCACGGGCTGATCAAGTGCCACTCGGAGGCGAGGGTGAAGCCGCCGGCGGGGCTCACCCTACCGCGGCGGAGGTCGGATAACTTCGAAGGATCGGTGTACGACATATTCGGGTCGATGGAAGATCAGAAGAGCGAGCTAAGCGCGTTCTCGACAATGCCGAGGTCGTTG CCCGCACGGCGGCGGGTGATGATGCGCAAGGTTGGCAGCTTGTTCCGGTTTAAGAGCTTCAGTATCAAGTAGTAGCTGCTACTGCCGAG                                                                                                                                                                 ]
[+] EMBL C72486               [                                                             TGGTCCAAGAATTCTTGCTCATATCGCCGTGCAA GTCTGAAGAGGTGTTCAATCCGGACGAACAAGATGCAGCAGAGCCGGCAGGACGTGGACGAGCATGTCGCCGAGCTCCGCGGCGAGCTGCGCAAGGCGCGCGAGGAGCGAGACCGCGCGTACCG GTCCTGGAGGTGAGCGAGTGGAAGGCGCTGGCGTCGGCCAACGACCGCACCACCATAGAGACGCTCGAGGCGGA NTCGACGCGTCCAGGGAGTCCGAGAAGCGGATGCTCGAGTCCCTGGCGATGCAGACGAAGCAGCTCGAGATGACCAAGATCGAGCTCGAGGAGGCCAGGNTNGAGAACGCGTCGTTGCGTGAGACCATCCAGAGGTTCGAGGCCATAGCGGTGCCCGTCGCGACGACGCCGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU083440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGATTCCTCGTCGTCGCACGGGTCGAGAGAACTGCACGGGCTGATCAAGTGCCACTCGGAGGCGAGGGTGAAGCCGCCGGCGGGGCTCACCCTACCGCGGCGGAGGTCGGATAACTTCGAAGGATCGGTGTACGACATATTCGGGTCGATGGAAGATCAGAAGAGCGAGCTAAGCGCGTTCTCGACAATGCCGAGGTCGTTGCCCCGCACGGCGGCGGGTGATGATGCGCAAGGTTGGCAGCTTGTTCCGGTTTAAGAGCTTCAGTATCAAGTAGTAGCTGCTACTGCCGAGATTCGGGGCCTGTCTTCTCTTCTCACTACCTGTTTGGGCGTGTCAGTTTTGATTGATCGGTGCTTTCTGTGTACTACTACTGGGTTTACCTTCCTTTCGCCTGATCATATCATCAGATCATGAGCTGGTAAAGTGTATACGAGTACATCATTTCATAAAAA]


>consensus_7521#0 TTATCCTCTTCTTCCTCCACATGCCTCGAAGTTTAGCCCATCCCCGATCGCCGCACCATC ATGGTCCAAGAATTCTTGCTCATATCGCCGTGCAACGTCTGAAGAGGTGTTCAATCCGGA CGAACAAGATGCAGCAGAGCCGGCAGGACGTGGACGAGCATGTCGCCGAGCTCCGCGGCG AGCTGCGCAAGGCGCGCGAGGAGCGAGACCGCGCGTACCGCGTCCTGGAGGTGAGCGAGT GGAAGGCGCTGGCGTCGGCCAACGACCGCACCACCATAGAGACGCTCGAGGCGGAGCTCG ACGCGTCCAGGGAGTCCGAGAAGCGGATGCTCGAGTCCCTGGCGATGCAGACGAAGCAGC TCGAGATGACCAAGATCGAGCTCGAGGAGGCCAGGCTGGAGAACGCGTCGCTGCGTGAGA CCATCCAGAGGCTCGAGGCCATAGCGGTGCCCGTCGCGACGACGCCGAGAGGAAGGTACG ATCGCGACTACCAGAGGGTTCACGGCGAGCTGCGGATGGCGCTGGTGGCGGAGGACAAGA ACAAGAAGGCGATGGAGGAGCTGGTGCTGGCACTCAAGGAGGTGAACGGGGAGCTGCACA CGACGCGGCAGCTGCTGGCGCGGTCGCAGCACGAGGCCGAGACGGCGCGGCTGGAGTCGG ACCGGCTGCACGTCTCGCTCAAGCGCAAGGACGACAAGCTCCGCGCGCTGTCGGAGGAGG TGGCCAGGCTGCGCGCCGACGCCGAGGAGTCGTTCGCGGCGTGGCGGGGCAAGGAGGCCG GGTTCACGTCGTGCATGAAGTCCACCGAGTCCGAGCTCGCCGAGACGCGGCGCGAGAACG CGCGCCTCCTGGAGTCGCAGCGGTCCGGGCGGGACGAGATCGCCAAGCTGCGCGACATCC TGAGGCAGGCCGTCAAGGACACCAAGGTCGTGAAGGAGGCGCTGGAGGAGGCGAGGGGCG AGAACGCCGCGCTCAAGGAGATGCTCGGCGACAAGGACACCGCCATCAAGTGCACCAAGC AGGAGCTCGAGTGCCTCCGGGTGACGGAGGCGGCGGCGCGCGACAGCGTCAAGGAGCTGC AGAGCCTGCTCGTCGCCACGTCGTCGAGCCCCACGGCCGCCGGCATGAAGCTATCCGCGT CGCCGAGCCCCACAGCTTCCGGGATAAAGCTGGACATGGAGGATTCCTCGTCGTCGCACG GGTCGAGAGAACTGCACGGGCTGATCAAGTGCCACTCGGAGGCGAGGGTGAAGCCGCCGG CGGGGCTCACCCTACCGCGGCGGAGGTCGGATAACTTCGAAGGATCGGTGTACGACATAT TCGGGTCGATGGAAGATCAGAAGAGCGAGCTAAGCGCGTTCTCGACAATGCCGAGGTCGT TGCCCGCACGGCGGCGGGTGATGATGCGCAAGGTTGGCAGCTTGTTCCGGTTTAAGAGCT TCAGTATCAAGTAGTAGCTGCTACTGCCGAGATTCGGGGCCTGTCTTCTCTTCTCACTAC CTGTTTGGGCGTGTCAGTTTTGATTGATCGGTGCTTTCTGTGTACTACTACTGGGTTTAC CTTCCTTTCGCCTGATCATATCATCAGATCATGAGCTGGTAAAGTGTATACGAGTACATC ATTTCATAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)