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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1748 fasta sequence
[CACCCTCCTCGTTTCTCCCAGGCTTCAGAGTCGCCGCCGCCAAATCGCCGCCCACCACCGGTCGCCCGCCGCCGCCGCCGCCGGTTGCCCGCTTCGCCCTAGCGGGCTCGCCCTCGCCAACGGCACCGCGACGCTTGCCTCGCCATCGCTGGCACCGCCTCGCCTCTGACCGCGAGCTCTTCGACGGCGTCAGACAGCGCCACGACCACTCCCCGCAGGCTGCGGCGCTGCGCCCACCACTCCCCGCGGCCTCTCACGGAGTGAGGCCTATCCGCGGCCTTTCTCGTGTCGGCTCCGTGAGACCTATCCGCGGCCTTTCTCGTGTCGGCTTGATTGTTCTTAATTCGTTGGCATGGGCAAATCCAAAGACAAGAAGGCCTCACGGGAAGCTAAAGCGGATAAGAAATTAGTGCTTGGAG-TGAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGAGGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGTAGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACATGTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAAAAAGAATCTCAAAGAAGGCAGTAATCTTGTTGAGGAGCATCAAAGTTTGTCTGACAGAATTAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGCAGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACTCACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAAAAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGATGTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATTTTGATATTTTAAAAAAAAAGA]
[+] EMBL AK109840 [CACCCTCCTCGTTTCTCCCAGGCTTCAGAGTCGCCGCCGCCAAATCGCCGCCCACCACCGGTCGCCCGCCGCCGCCGCCGCCGGTTGCCCGCTTCGCCCTAGCGGGCTCGCCCTCGCCAACGGCACCGCGACGCTTGCCTCGCCATCGCTGGCACCGCCTCGCCTCTGACCGCGAGCTCTTCGACGGCGTCAGACAGCGCCACGACCACTCCCCGCAGGCTGCGGCGCTGCGCCCACCACTCCCCGCGGCCTCTCACGGAGTGAGGCCTATCCGCGGCCTTTCTCGTGTCGGCTCCGTGAGACCTATCCGCGGCCTTTCTCGTGTCGGCTTGATTGTTCTTAATTCGTTGGCATGGGCAAATCCAAAGACAAGAAGGCCTCACGGGAAGCTAAAGCGGATAAGAAATTAGTGCTTGGAG TGAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGAGGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGTAGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACATGTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAAAAAGAATCTCAAAGAAGGCAGTAATCTTGTTGAGGAGCATCAAAGTTTGTCTGACAGAATTAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGCAGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACTCACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAAAAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGATGTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATT ]
[+] EMBL CB649324 [ TTGGAGCTGAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGAGGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGTAGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACATGTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAAAAAGAATCTCAAAGAAGGCAGTAATCCTGTTGAGGAGCATCAAAGTTTGTCTGACAGAATTAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGCAGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACTCACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAAAAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGAAAG ]
[-] EMBL CB649325 [ AAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGATGTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATTTTGATATTTTAAAAAAAAAGA]
consensusID : consensus_7523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[AGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGGTCCGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCAAAAAAAAAAAAAAAA]
[-] EMBL CA762416 [AGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGGTCCGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7523#0 CACCCTCCTCGTTTCTCCCAGGCTTCAGAGTCGCCGCCGCCAAATCGCCGCCCACCACCG 60
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 GTCGCCCGCCGCCGCCGCCGCCGGTTGCCCGCTTCGCCCTAGCGGGCTCGCCCTCGCCAA 120
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 CGGCACCGCGACGCTTGCCTCGCCATCGCTGGCACCGCCTCGCCTCTGACCGCGAGCTCT 180
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 TCGACGGCGTCAGACAGCGCCACGACCACTCCCCGCAGGCTGCGGCGCTGCGCCCACCAC 240
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 TCCCCGCGGCCTCTCACGGAGTGAGGCCTATCCGCGGCCTTTCTCGTGTCGGCTCCGTGA 300
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 GACCTATCCGCGGCCTTTCTCGTGTCGGCTTGATTGTTCTTAATTCGTTGGCATGGGCAA 360
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 ATCCAAAGACAAGAAGGCCTCACGGGAAGCTAAAGCGGATAAGAAATTAGTGCTTGGAGT 420
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 GAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGA 480
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 GGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGT 540
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 AGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACAT 600
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 GTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAA 660
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 AAAGAATCTCAAAGAAGGCAGTAATCTTGTTGAGGAGCATCAAAGTTTGTCTGACAGAAT 720
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 TAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGC 780
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 AGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACT 840
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 CACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAA 900
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 AAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATC 960
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 CAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGAT 1020
consensus_7523#1 ------AGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGAT 54
******************************************************
consensus_7523#0 TCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACA 1080
consensus_7523#1 TCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACA 114
************************************************************
consensus_7523#0 GAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGA 1140
consensus_7523#1 GAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGA 174
************************************************************
consensus_7523#0 GGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGAC 1200
consensus_7523#1 GGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGAC 234
************************************************************
consensus_7523#0 AGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGT 1260
consensus_7523#1 AGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGT 294
************************************************************
consensus_7523#0 TGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGT 1320
consensus_7523#1 TGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGT 354
************************************************************
consensus_7523#0 TGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCT 1380
consensus_7523#1 TGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCT 414
************************************************************
consensus_7523#0 GCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATT 1440
consensus_7523#1 GCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATT 474
************************************************************
consensus_7523#0 CAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACC 1500
consensus_7523#1 CAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACC 534
************************************************************
consensus_7523#0 CTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAAC 1560
consensus_7523#1 CTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGGTCCGTTGGATAAC 594
********************************************** ** **********
consensus_7523#0 ATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCA 1620
consensus_7523#1 ATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCA 654
************************************************************
consensus_7523#0 GATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGAT 1680
consensus_7523#1 GATGTATTGGTTTAAAATCATGCCAAAAAAAAAAAAAAAA-------------------- 694
************************* ** * *
consensus_7523#0 GTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATTTTGATATTTTAAA 1740
consensus_7523#1 ------------------------------------------------------------
consensus_7523#0 AAAAAAGA 1748
consensus_7523#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||