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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[ATGGTTTACTATTGATTGGTTATAGCCTTCCTTCCAAGCATCCAAGAAAGATAAAGAGCCAAGCCATTCCAACATAAACTGACACTTTAGGATCCTCTAAGCCTTTCTATAGAACCCCTAAGTAGGGAAGGTACTAAAAAGAAACTCAAAACTAGCACTACTAACACAGGCTGAAGAGGATGACCTCGAAAAAGAATACAATTAAAGATGTGGCCTTCCCTCCAAGCACATATAGTGGATATGGAGCACTCTTTTCCACCCTAGTCCTGTATATATTTCATTCCCGCCATTGACAGCAACTCACTCTTTTCGAACTGCACTTTGAAAGCCCAAGCCCACAGAAAGACCATATCAACTACTCTCCAAAGTTGCAGGATAAGTCACAGAATTCAAATGGAAGACAGAAAGAGAAGGCAATTCAAACCTAATGGCCCAACATTACGAATCCACAGACAGATAGTCTTAAAAAAAAAA]
[+] EMBL BI799988 [ATGGTTTACTATTGATTGGTTATAGCCTTCCTTCCAAGCATCCAAGAAAGATAAAGAGCCAAGCCATTCCAACATAAACTGACACTTTAGGATCCTCTAAGCCTTTCTATAGAACCCCTAAGTAGGGAAGGTACTAAAAAGAAACTCAAAACTAGCACTACTAACACAGGCTGAAGAGGATGACCTCGAAAAAGAATACAATTAAAGATGTGGCCTTCCCTCCAAGCACATATAGTGGATATGGAGCACTCTTTTCCACCCTAGTCCTGTATATATTTCATTCCCGCCATTGACAGCAACTCACTCTTTTCGAACTGCACTTTGAAAGCCCAAGCCCACAGAAAGACCATATCAACTACTCTCCAAAGTTGCAGGATAAGTCACAGAATTCAAATGGAAGACAGAAAGAGAAGGCAATTCAAACCTAATGGCCCAACATTACGAATCCACAGACAGATAGTCTTAAAAAAAAAA]
consensusID : consensus_7525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[AGGATCCTCTAAGCCCTTTCTATAGAACCCCTAATTAGGGAAGGTACTAAATAAGAAACTGCCTAAACTACGCACTACTAACACCAAGGCTGAAGAGGATGACCTCGAATAAAGAATACCAATTAAAGATGTGCGCCTTCCCTCCAAGCACATATATGGGATATGGAGCACGTCGTGTGTGTCCACCCCCGTAGTCCGTGTAGTAGTAGTTGTCAGTGTCCCGCCCACTTGAACAGCCAACGTCACGTCGTGTGTGTCGAACGTGCCACGTCTTGAAAAGCCCAAAAGCCCAGAAAAGAACCCAGTACGTCAACGTACGTCGTCCCAAGTTGCCAGGAGTAAGGTCACCAGAAGTGTCAAAGTGGAAGACCAGAAAGAAGAAGGCCATTCCAACCTAATGGCCCAACCTTACGAATCCCAGACAGATAGTCTTAAAAAAAAAA]
[+] EMBL BI798526 [AGGATCCTCTAAGCCCTTTCTATAGAACCCCTAATTAGGGAAGGTACTAAATAAGAAACTGCCTAAACTACGCACTACTAACACCAAGGCTGAAGAGGATGACCTCGAATAAAGAATACCAATTAAAGATGTGCGCCTTCCCTCCAAGCACATATATGGGATATGGAGCACGTCGTGTGTGTCCACCCCCGTAGTCCGTGTAGTAGTAGTTGTCAGTGTCCCGCCCACTTGAACAGCCAACGTCACGTCGTGTGTGTCGAACGTGCCACGTCTTGAAAAGCCCAAAAGCCCAGAAAAGAACCCAGTACGTCAACGTACGTCGTCCCAAGTTGCCAGGAGTAAGGTCACCAGAAGTGTCAAAGTGGAAGACCAGAAAGAAGAAGGCCATTCCAACCTAATGGCCCAACCTTACGAATCCCAGACAGATAGTCTTAAAAAAAAAA]
consensusID : consensus_7525#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[GAAAGAAAAGAGCAAAGCATTCCACATAACTGACACTTTAGGATCCTCTAAGCCTTTCTATAGAACCCCTAAGTAGGGAAGGTACTAAAAAGAAACTCAAAACTAGCACTACTAACACCAGGCTGAAGAGGATGACCTCGAAAAAGAATACCATTAAAGATGTGGCCTTCCCTCCAAGCACATATATGGAGTATGGAGCACTCTTTGTCCACCCGTAGTCCGTTATAGTAGTGTTCATGTCCCGCCCTTGACAGCAACGTCACGTCTTGTTCGAACTGCACGTTTGAAAGCCCAAGCCCAGAAAGACCAGTATCAACGTACTCTCCCAAGTTGCCAGGATAAGGTCCCAGAATTCAAATGGAAGACAGAAAGAGAAGGCCATTCAAACCTAATGGCCCAACCTTACGAATCCCAGACAGATATCTTAAAAAAAAAA]
[+] EMBL BI799586 [GAAAGAAAAGAGCAAAGCATTCCACATAACTGACACTTTAGGATCCTCTAAGCCTTTCTATAGAACCCCTAAGTAGGGAAGGTACTAAAAAGAAACTCAAAACTAGCACTACTAACACCAGGCTGAAGAGGATGACCTCGAAAAAGAATACCATTAAAGATGTGGCCTTCCCTCCAAGCACATATATGGAGTATGGAGCACTCTTTGTCCACCCGTAGTCCGTTATAGTAGTGTTCATGTCCCGCCCTTGACAGCAACGTCACGTCTTGTTCGAACTGCACGTTTGAAAGCCCAAGCCCAGAAAGACCAGTATCAACGTACTCTCCCAAGTTGCCAGGATAAGGTCCCAGAATTCAAATGGAAGACAGAAAGAGAAGGCCATTCAAACCTAATGGCCCAACCTTACGAATCCCAGACAGATATCTTAAAAAAAAAA]
consensusID : consensus_7525#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[CCAAACCAATTCCAACATAAACTGACACTTTAGGATCCTCTAAGCCTTTCTATAGAACCCCTAATTAGGGAAGGTACTAAAAAGAAACTCCAAACTAGCACTACTAACACCACGGCTGAAGAGGATGACCTCGAAAAAGAATACCATTAAAGATGTGCGCCTTCCCTCCAAGCACATATGATGGATATGGAGCACTCTTTTGCCACCCTATGCCTGTATATATGTTGCATTGCCCGCCCTTGGACAGCAACTGCACTGCTTTGTCGAACTGGCACTTTGGAAAGCCCAAGCCCAGAAAGACCATGATGCAACTGACTCTGCCCAATTGCAGGATAAGGCCCAGAATTGCAAATGGAAGACAGAAAGAGAAGGCAATTCAAACCTAATGGCCCAACCTTACGAATCCCAGACAGATAGTCTTAAAAAAAAAA]
[+] EMBL BI798590 [CCAAACCAATTCCAACATAAACTGACACTTTAGGATCCTCTAAGCCTTTCTATAGAACCCCTAATTAGGGAAGGTACTAAAAAGAAACTCCAAACTAGCACTACTAACACCACGGCTGAAGAGGATGACCTCGAAAAAGAATACCATTAAAGATGTGCGCCTTCCCTCCAAGCACATATGATGGATATGGAGCACTCTTTTGCCACCCTATGCCTGTATATATGTTGCATTGCCCGCCCTTGGACAGCAACTGCACTGCTTTGTCGAACTGGCACTTTGGAAAGCCCAAGCCCAGAAAGACCATGATGCAACTGACTCTGCCCAATTGCAGGATAAGGCCCAGAATTGCAAATGGAAGACAGAAAGAGAAGGCAATTCAAACCTAATGGCCCAACCTTACGAATCCCAGACAGATAGTCTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7525#0 ATGGTTTACTATTGATTGGTTATAGCCTTCCTTCCAAGCATCCAAGAAAGATAAAGAGCC 60
consensus_7525#3 ----------------------------------------------------------CC 2
consensus_7525#2 -----------------------------------------------GAAAGAAAAGAGC 13
consensus_7525#1 ------------------------------------------------------------
consensus_7525#0 AAGCCA-TTCCAACATAAACTGACACTTTAGGATCCTCTAAGCC-TTTCTATAGAACCCC 118
consensus_7525#3 AAACCAATTCCAACATAAACTGACACTTTAGGATCCTCTAAGCC-TTTCTATAGAACCCC 61
consensus_7525#2 AAAGCA--TTCCACATAA-CTGACACTTTAGGATCCTCTAAGCC-TTTCTATAGAACCCC 69
consensus_7525#1 -----------------------------AGGATCCTCTAAGCCCTTTCTATAGAACCCC 31
*************** ***************
consensus_7525#0 TAAGTAGGGAAGGTACTAAA-AAGAAACT--CAAAACTA-GCACTACTAACACA--GGCT 172
consensus_7525#3 TAATTAGGGAAGGTACTAAA-AAGAAACT--CCAAACTA-GCACTACTAACACCACGGCT 117
consensus_7525#2 TAAGTAGGGAAGGTACTAAA-AAGAAACT--CAAAACTA-GCACTACTAACACCA-GGCT 124
consensus_7525#1 TAATTAGGGAAGGTACTAAATAAGAAACTGCCTAAACTACGCACTACTAACACCAAGGCT 91
*** **************** ******** * ****** ************* ****
consensus_7525#0 GAAGAGGATGACCTCGAA-AAAGAATACAA-TTAAAGATGTG-GCCTTCCCTCCAAGCAC 229
consensus_7525#3 GAAGAGGATGACCTCGAA-AAAGAATACCA-TTAAAGATGTGCGCCTTCCCTCCAAGCAC 175
consensus_7525#2 GAAGAGGATGACCTCGAA-AAAGAATACCA-TTAAAGATGTG-GCCTTCCCTCCAAGCAC 181
consensus_7525#1 GAAGAGGATGACCTCGAATAAAGAATACCAATTAAAGATGTGCGCCTTCCCTCCAAGCAC 151
****************** ********* * *********** *****************
consensus_7525#0 ATATAGTGGATATGGAGCAC----TCTTTT-CCACCC---TAGTCC-TGTA-TA-TATTT 278
consensus_7525#3 ATATGATGGATATGGAGCAC----TCTTTTGCCACCC---TATGCC-TGTA-TA-TATGT 225
consensus_7525#2 ATATATGGAGTATGGAGCAC----TCTTTGTCCACCCG--TAGTCC-GTTA-TAGTAGTG 233
consensus_7525#1 ATATATGGGATATGGAGCACGTCGTGTGTGTCCACCCCCGTAGTCCGTGTAGTAGTAGTT 211
**** * ********** * * * ****** ** ** ** ** **
consensus_7525#0 --CATT--CCCGCCA--TTG-ACAGC-AACT-CACTCTTT---T--CGAAC-TG-CAC-- 320
consensus_7525#3 TGCATTG-CCCGCCC--TTGGACAGC-AACTGCACTGCTT---TGTCGAAC-TGGCAC-- 275
consensus_7525#2 TTCATGT-CCCGCCC--TTG-ACAGC-AACGTCACGTCTT---GTTCGAAC-TG-CAC-- 281
consensus_7525#1 GTCAGTGTCCCGCCCACTTGAACAGCCAACGTCACGTCGTGTGTGTCGAACGTGCCACGT 271
** ****** *** ***** *** *** * ***** ** ***
consensus_7525#0 TTTG-AAAGCCCAA--GCCCACAGAAAGACC--ATAT--CAACT-ACTC--TCCAAAGTT 370
consensus_7525#3 TTTGGAAAGCCCAA--GCCCA--GAAAGACC--ATGATGCAACTGACTC--TGCCCAATT 327
consensus_7525#2 GTTTGAAAGCCCAA--GCCCA--GAAAGACC--AGTAT-CAACGTACTC--TCCCAAGTT 332
consensus_7525#1 CTTGAAAAGCCCAAAAGCCCAGAAAAGAACCCAGTACGTCAACGTACGTCGTCCCAAGTT 331
** ********* ***** ** *** **** ** * * * **
consensus_7525#0 GC-AGGA-TAAGT-C-ACAGAATT---CAAATGGAAGAC-AGAAAGA-GAAGGCAATTCA 421
consensus_7525#3 GC-AGGA-TAAGG-C-CCAGAATTG--CAAATGGAAGAC-AGAAAGA-GAAGGCAATTCA 379
consensus_7525#2 GCCAGGA-TAAGGTC-CCAGAATT---CAAATGGAAGAC-AGAAAGA-GAAGGCCATTCA 385
consensus_7525#1 GCCAGGAGTAAGGTCACCAGAAGTGTCAAAGTGGAAGACCAGAAAGAAGAAGGCCATTCC 391
** **** **** * ***** * ** ******** ******* ****** ****
consensus_7525#0 AACCTAATGGCCCAACATTACGAATCCACAGACAGATAGTCTTAAAAAAAAAA 474
consensus_7525#3 AACCTAATGGCCCAACCTTACGAATCC-CAGACAGATAGTCTTAAAAAAAAAA 431
consensus_7525#2 AACCTAATGGCCCAACCTTACGAATCC-CAGACAGATA-TCTTAAAAAAAAAA 436
consensus_7525#1 AACCTAATGGCCCAACCTTACGAATCC-CAGACAGATAGTCTTAAAAAAAAAA 443
**************** ********** ********** **************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||