Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7529 cluster # 7529       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7529#0 length = 2666 sequences # 4  

consensusID : consensus_7529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2666
fasta sequence
                              [TTTCTCTCCTCCTATGTGCCACCACCTCCTCACACATTCCCACGCACACATTTCCCCATGCACATCTCCCTCAATCTCTCTCTCTCTCTGCATAGATGCTGCTACTCCTACTTGCTAGCCCTACTACTCCCTACCACACGGCCACACACACAGCAAGCAGAGCAGACGGCTTCGCTTTGCATGGCCACTGGAGTTGTTGCTGTTCTTCTTCCCTTTGAGCAGCAGCAGCAGTGAGCCGTCCTGTGGTGTGTTGGTTGTCACAGTACTGTGTGGTAGTGGTGGAAGTGGAGGAGCAAACCTTGGACATGAATTGAGAGGCCCCTATCTTTTCCTGTCCATCTCTCAGTAGCAGTGAGCTGAGTGAGTGAGTGAGTGACAGTGAGTGATGGATTGATGTGTGATGCCTCACTAGCTGAGCCCCCCCCTCC-TCCTCCTCCTTCCTTTGTGGCAAATCTCATCAGCAACAGGGACCTCTTGGTGTGACTACTTTGTTTACACGGTGGTTCTCTCCTTTTCTTC-TTCTCAGCGTCGCCGTCGTC-TTCTTTC-TCCTTCATTCATTCAGACTTCATCAGAGT-AGTAGTAGTAGGAAGGAGATAGTGTAGACAAGAAGTGTGTGTGTGTGTGTGAGAGAGAGGTAGAGAGATGGAGAGGAGGAGGAAGGCAATGTGGCTGTATCCAAAGGTGGTGGGCTTCAACCCTCCGGAGAGATGGGGGCACTCCGCTTGCTTCTTCGAGGGCGTCGTCTACGTCTTTGGGGGGTGCTGCGGCGGGCTGCATTTCAACGACGTGCTGACGCTGAACCTGGAGACGATGGCGTGGAGCTCGCTGGCGACGACAGGGGCGCGGCCGGGGACGCGCGACAGCCACGGCGCGGCGCTGGTCGGCCACCGGATGATGGTGTTCGGCGGCACCAACGGGTCCAAGAAGGTGAACGACCTCCACGTGC-TCGACCTCCGGACCAAGGAGTGGACCAAGCCGCCGTGCAAGGGCACGCCGCCGTCGCCGCGTGAGAGCCACACGGTGACTGCGTGCGGCGGCTGCGACCGGCTGGTGGTGTTCGGCGGCAGCGGCGAGGGGGAGGGGAACTACCTCAACGACGTGCACGTCCTGGACGTGGCCACCATGACGTGGTCGTCGCCGGAGGTGAAGGGCGACGTCGTGCCCGCGCCGAGGGACAGCCACGGCGCCGTCGCTGTGGGCAGCCGGCTGGTCGTCTACGGCGGCGACTGCGGCGACCGGTACCACGGCGAGGTGGACGTGCTCGACATGGACGCCATGGCGTGGTCAAGGTTTGCAGTAAAAGGGGCCTCACCTGGTGTTCGAGCTGGCCACGCTGCTGTAGGTGTTGGATCTAAGGTCTATGTTATTGGAGGAGTTGGTGATAAGCAATACTACAGTGATGCCTGGATTCTTGATGTTGCAAATCGGTCGTGGACACAGCTTGAGATATGTGGGCAGCAACCGCAAGGACGGTTTTCTCATAGCGCGGTTGTCCTGAATACCGATATCGCAATTTACGGAGGGTGTGGTGAAGATGAACGGCCCCTGAATGAGCTGCTCATTCTTCAGTTGGGCTCTGAGCATCCAAATGGCCGTTACAACATCTCAATGTGCAAAGTTCTAAGCAACCACTGGAGCCAGGAGAGGCGAAAATTCTTGAGAACAGAAAATCAAAGAGATCCAAACATGAGTAATGGAGAACTTGGTCCAAGATCTCGGGAAGCAGAAATCGAACAAAGAAACCCGTTCTTGCGTGGTCTCGAGAATGGCCATGTGAAAAGGAGGAGAACTGGCGATGTTCGACTGAAAGAGACCGAGTCGGAGCAGGAGGAGCACTCACTATCACTTTCTCAGCACTCTTCACCATCCCAATCTGATCAGGAGCAGAATGGAGCTCAGAAGCTTTCGGCATCTCCTAACGGATCAATCTCAGCCCTGCAACCGTTTGTTCACCTCAACACCAATGGCACTCTGAGGGCTGCTGGAGGTGTGTCACCGAGGACCCTGAAGACGGATCAGTTCCTCCGCACCATTGCTCCGCAGCAGCGGCATGAAGTGCAGTTCCTAGCAGCTGAACCCAAGCTGCACCACCGCCCGCCTACTCCACCCCTTATCGGCGCAGAGGTTCATGGGACTATCGATGGAGCTTTCGATTCAGGGTACCTCATGACCGCTGTCGTGAATGGACAGCTCTTCAGAGGCGTCCTTTTCGCTCCTGGTCCGGGAGTAACGGCTCCGAGACCGACGTTGCACCATCCGATTCTGATGAGCTCGGCCATTCCCCCGCAGCAGCAGCAGCAGCGCCCGGTGCTCGCCCACGCCATCCCGGTTCATGCCCGGCCCGTGCCACAGGCGACGGGCTTCGTGCTGCCGGACTGCAGCAACCATGCCCGGCAAGCATTCCCGGCGTCTGCAGCGGCGGCAGCGGCGAAGATCATCAAGTCTGAACCGGAGAGGGGCGGCAGTGACCTGCACGATGTTGTGCTCACGCTGGGAGGGCCTGGAGCTGGCAAGTGACACCTCTTTTCTTGTTTTAACACTTGTGATCTTGGCCTCTGATGTTGATCTGTTAATCTGCTCTTGTAAAATAGTCATCCTGGTTGACAAAAATAAGACCAGTAACCTTGTGTAATTGTTCCTGATAATGCCCAATTTTCTTCTTCCTG]

[+] EMBL AK101262             [TTTCTCTCCTCCTATGTGCCACCACCTCCTCACACATTCCCACGCACACATTTCCCCATGCACATCTCCCTCAATCTCTCTCTCTCTCTGCATAGATGCTGCTACTCCTACTTGCTAGCCCTACTACTCCCTACCACACGGCCACACACACAGCAAGCAGAGCAGACGGCTTCGCTTTGCATGGCCACTGGAGTTGTTGCTGTTCTTCTTCCCTTTGAGCAGCAGCAGCAGTGAGCCGTCCTGTGGTGTGTTGGTTGTCACAGTACTGTGTGGTAGTGGTGGAAGTGGAGGAGCAAACCTTGGACATGAATTGAGAGGCCCCTATCTTTTCCTGTCCATCTCTCAGTAGCAGTGAGCTGAGTGAGTGAGTGAGTGACAGTGAGTGATGGATTGATGTGTGATGCCTCACTAGCTGAGCCCCCCCCTCC TCCTCCTCCTTCCTTTGTGGCAAATCTCATCAGCAACAGGGACCTCTTGGTGTGACTACTTTGTTTACACGGTGGTTCTCTCCTTTTCTTC TTCTCAGCGTCGCCGTCGTC TTCTTTC TCCTTCATTCATTCAGACTTCATCAGAGT AGTAGTAGTAGGAAGGAGATAGTGTAGACAAGAAGTGTGTGTGTGTGTGTGAGAGAGAGGTAGAGAGATGGAGAGGAGGAGGAAGGCAATGTGGCTGTATCCAAAGGTGGTGGGCTTCAACCCTCCGGAGAGATGGGGGCACTCCGCTTGCTTCTTCGAGGGCGTCGTCTACGTCTTTGGGGGGTGCTGCGGCGGGCTGCATTTCAACGACGTGCTGACGCTGAACCTGGAGACGATGGCGTGGAGCTCGCTGGCGACGACAGGGGCGCGGCCGGGGACGCGCGACAGCCACGGCGCGGCGCTGGTCGGCCACCGGATGATGGTGTTCGGCGGCACCAACGGGTCCAAGAAGGTGAACGACCTCCACGTGC TCGACCTCCGGACCAAGGAGTGGACCAAGCCGCCGTGCAAGGGCACGCCGCCGTCGCCGCGTGAGAGCCACACGGTGACTGCGTGCGGCGGCTGCGACCGGCTGGTGGTGTTCGGCGGCAGCGGCGAGGGGGAGGGGAACTACCTCAACGACGTGCACGTCCTGGACGTGGCCACCATGACGTGGTCGTCGCCGGAGGTGAAGGGCGACGTCGTGCCCGCGCCGAGGGACAGCCACGGCGCCGTCGCTGTGGGCAGCCGGCTGGTCGTCTACGGCGGCGACTGCGGCGACCGGTACCACGGCGAGGTGGACGTGCTCGACATGGACGCCATGGCGTGGTCAAGGTTTGCAGTAAAAGGGGCCTCACCTGGTGTTCGAGCTGGCCACGCTGCTGTAGGTGTTGGATCTAAGGTCTATGTTATTGGAGGAGTTGGTGATAAGCAATACTACAGTGATGCCTGGATTCTTGATGTTGCAAATCGGTCGTGGACACAGCTTGAGATATGTGGGCAGCAACCGCAAGGACGGTTTTCTCATAGCGCGGTTGTCCTGAATACCGATATCGCAATTTACGGAGGGTGTGGTGAAGATGAACGGCCCCTGAATGAGCTGCTCATTCTTCAGTTGGGCTCTGAGCATCCAAATGGCCGTTACAACATCTCAATGTGCAAAGTTCTAAGCAACCACTGGAGCCAGGAGAGGCGAAAATTCTTGAGAACAGAAAATCAAAGAGATCCAAACATGAGTAATGGAGAACTTGGTCCAAGATCTCGGGAAGCAGAAATCGAACAAAGAAACCCGTTCTTGCGTGGTCTCGAGAATGGCCATGTGAAAAGGAGGAGAACTGGCGATGTTCGACTGAAAGAGACCGAGTCGGAGCAGGAGGAGCACTCACTATCACTTTCTCAGCACTCTTCACCATCCCAATCTGATCAGGAGCAGAATGGAGCTCAGAAGCTTTCGGCATCTCCTAACGGATCAATCTCAGCCCTGCAACCGTTTGTTCACCTCAACACCAATGGCACTCTGAGGGCTGCTGGAGGTGTGTCACCGAGGACCCTGAAGACGGATCAGTTCCTCCGCACCATTGCTCCGCAGCAGCGGCATGAAGTGCAGTTCCTAGCAGCTGAACCCAAGCTGCACCACCGCCCGCCTACTCCACCCCTTATCGGCGCAGAGGTTCATGGGACTATCGATGGAGCTTTCGATTCAGGGTACCTCATGACCGCTGTCGTGAATGGACAGCTCTTCAGAGGCGTCCTTTTCGCTCCTGGTCCGGGAGTAACGGCTCCGAGACCGACGTTGCACCATCCGATTCTGATGAGCTCGGCCATTCCCCCGCAGCAGCAGCAGCAGCGCCCGGTGCTCGCCCACGCCATCCCGGTTCATGCCCGGCCCGTGCCACAGGCGACGGGCTTCGTGCTGCCGGACTGCAGCAACCATGCCCGGCAAGCATTCCCGGCGTCTGCAGCGGCGGCAGCGGCGAAGATCATCAAGTCTGAACCGGAGAGGGGCGGCAGTGACCTGCACGATGTTGTGCTCACGCTGGGAGGGCCTGGAGCTGGCAAGTGACACCTCTTTTCTTGTTTTAACACTTGTGATCTTGGCCTCTGATGTTGATCTGTTAATCTGCTCTTGTAAAATAGTCATCCTGGTTGACAAAAATAAGACCAGTAACCTTGTGTAATTGTTCCTGATAATGCCCAATTTT          ]
[+] EMBL AU062862             [                                                                                                                                                                                                                  CCCTTTGAGCAGCAGCAGCAGTNAGCCGTCCTGTGGTGTGTTGGTTGTCACAGTACTGTGTGGTGGTGGTGGAAGTGGAGGAGCAAACCTTGGACATGAATTGAGAGGCCCCTATCTTTTCCANTCCATCTCTCAGTAGCAGTGAGCTGAGTGAGTGAGTNAGTANCAGTGAGTGATGGATTGATGTGTGATGCCTCACTAGCTGAGCCCCCCCCTCCTTNCTCCTCCTTCCTTTGTGGCAAATCTCATCAGCAACAGGGACCTCTTNGTGTGACTACTTTGTTTACACGGTGGTTCTCTCCTTTNCTNCTTTCTCAGCGTCGCCGTCGTCTTTCTTTCTTCCTGCATTCATTCAGACTTCATCAGAGTAAGTAGgta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C72594               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGACAAGAAGTGTGTGTGTGTGTGTGAGAGAGAGGTAGAGAGATGGAGAGGAGGAGGAAGGCAATGTGGCTGTATCCAAAGGTGGTGGGCTTCAACCCTCCGGAGAGATGGGGGCACTCCGCTTGCTTCTTCGAGGGCGTCGTCTACGTCTTTGGGGGGTGCTGCGGCGGGCTGCATTTCAGCGACGTGCTGACGCTGAACCTGGAGACGATGGCGTGGAGCTCGCTGGCGACGACAGGGGCGCGGCCGNGGACGCGCGACA CCACGGCGCGGCGCTGGTCGGCCACCGGATGATGGTGTTCGGCGGCACCAACGGGTCCAAGAAGGTGAACGACCTCCACGTGCTTCGACCTCCGGACCAAGGAGTTGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK119559             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAACGACGTGCACGTCCTGGACGTGGCCACCATGACGTGGTCGTCGCCGGAGGTGAAGGGCGACGTCGTGCCCGCGCCGAGGGACAGCCACGGCGCCGTCGCTGTGGGCAGCCGGCTGGTCGTCTACGGCGGCGACTGCGGCGACCGGTACCACGGCGAGGTGGACGTGCTCGACATGGACGCCATGGCGTGGTCAAGGTTTGCAGTAAAAGGGGCCTCACCTGGTGTTCGAGCTGGCCACGCTGCTGTAGGTGTTGGATCTAAGGTCTATGTTATTGGAGGAGTTGGTGATAAGCAATACTACAGTGATGCCTGGATTCTTGATGTTGCAAATCGGTCGTGGACACAGCTTGAGATATGTGGGCAGCAACCGCAAGGACGGTTTTCTCATAGCGCGGTTGTCCTGAATACCGATATCGCAATTTACGGAGGGTGTGGTGAAGATGAACGGCCCCTGAATGAGCTGCTCATTCTTCAGTTGGGCTCTGAGCATCCAAATGGCCGTTACAACATCTCAATGTGCAAAGTTCTAAGCAACCACTGGAGCCAGGAGAGGCGAAAATTCTTGAGAACAGAAAATCAAAGAGATCCAAACATGAGTAATGGAGAACTTGGTCCAAGATCTCGGGAAGCAGAAATCGAACAAAGAAACCCGTTCTTGCGTGGTCTCGAGAATGGCCATGTGAAAAGGAGGAGAACTGGCGATGTTCGACTGAAAGAGACCGAGTCGGAGCAGGAGGAGCACTCACTATCACTTTCTCAGCACTCTTCACCATCCCAATCTGATCAGGAGCAGAATGGAGCTCAGAAGCTTTCGGCATCTCCTAACGGATCAATCTCAGCCCGGCAACCGTTTGTTCACCTCAACACCAATGGCACTCTGAGGGCTGCTGGAGGTGTGTCACCGAGGACCCTGAAGACGGATCAGTTCCTCCGCACCATTGCTCCGCAGCAGCGGCATGAAGTGCAGTTCCTAGCAGCTGAACCCAAGCTGCACCACCGCCCGCCTACTCCACCCCTTATCGGCGCAGAGGTTCATGGGACTATCGATGGAGCTTTCGATTCAGGGTACCTCATGACCGCTGTCGTGAATGGACAGCTCTTCAGAGGCGTCCTTTTCGCTCCTGGTCCGGGAGTAACGGCTCCGAGACCGACGTTGCACCATCCGATTCTGATGAGCTCGGCCATTCCCCCGCAGCAGCAGCAGCAGCGCCCGGTGCTCGCCCACGCCATCCCGGTTCATGCCCGGCCCGTGCCACAGGCGACGGGCTTCGTGCTGCCGGACTGCAGCAACCATGCCCGGCAAGCATTCCCGGCGTCTGCAGCGGCGGCAGCGGCGAAGATCATCAAGTCTGAACCGGAGAGGGGCGGCAGTGACCTGCACGATGTTGTGCTCACGCTGGGAGGGCCTGGAGCTGGCAAGTGACACCTCTTTTCTTGTTTTAACACTTGTGATCTTGGCCTCTGATGTTGATCTGTTAATCTGCTCTTGTAAAATAGTCATCCTGGTTGACAAAAATAAGACCAGTAACCTTGTGTAATTGTTCCTGATAATGCCCAATTTTCTTCTTCCTG]


>consensus_7529#0 TTTCTCTCCTCCTATGTGCCACCACCTCCTCACACATTCCCACGCACACATTTCCCCATG CACATCTCCCTCAATCTCTCTCTCTCTCTGCATAGATGCTGCTACTCCTACTTGCTAGCC CTACTACTCCCTACCACACGGCCACACACACAGCAAGCAGAGCAGACGGCTTCGCTTTGC ATGGCCACTGGAGTTGTTGCTGTTCTTCTTCCCTTTGAGCAGCAGCAGCAGTGAGCCGTC CTGTGGTGTGTTGGTTGTCACAGTACTGTGTGGTAGTGGTGGAAGTGGAGGAGCAAACCT TGGACATGAATTGAGAGGCCCCTATCTTTTCCTGTCCATCTCTCAGTAGCAGTGAGCTGA GTGAGTGAGTGAGTGACAGTGAGTGATGGATTGATGTGTGATGCCTCACTAGCTGAGCCC CCCCCTCCTCCTCCTCCTTCCTTTGTGGCAAATCTCATCAGCAACAGGGACCTCTTGGTG TGACTACTTTGTTTACACGGTGGTTCTCTCCTTTTCTTCTTCTCAGCGTCGCCGTCGTCT TCTTTCTCCTTCATTCATTCAGACTTCATCAGAGTAGTAGTAGTAGGAAGGAGATAGTGT AGACAAGAAGTGTGTGTGTGTGTGTGAGAGAGAGGTAGAGAGATGGAGAGGAGGAGGAAG GCAATGTGGCTGTATCCAAAGGTGGTGGGCTTCAACCCTCCGGAGAGATGGGGGCACTCC GCTTGCTTCTTCGAGGGCGTCGTCTACGTCTTTGGGGGGTGCTGCGGCGGGCTGCATTTC AACGACGTGCTGACGCTGAACCTGGAGACGATGGCGTGGAGCTCGCTGGCGACGACAGGG GCGCGGCCGGGGACGCGCGACAGCCACGGCGCGGCGCTGGTCGGCCACCGGATGATGGTG TTCGGCGGCACCAACGGGTCCAAGAAGGTGAACGACCTCCACGTGCTCGACCTCCGGACC AAGGAGTGGACCAAGCCGCCGTGCAAGGGCACGCCGCCGTCGCCGCGTGAGAGCCACACG GTGACTGCGTGCGGCGGCTGCGACCGGCTGGTGGTGTTCGGCGGCAGCGGCGAGGGGGAG GGGAACTACCTCAACGACGTGCACGTCCTGGACGTGGCCACCATGACGTGGTCGTCGCCG GAGGTGAAGGGCGACGTCGTGCCCGCGCCGAGGGACAGCCACGGCGCCGTCGCTGTGGGC AGCCGGCTGGTCGTCTACGGCGGCGACTGCGGCGACCGGTACCACGGCGAGGTGGACGTG CTCGACATGGACGCCATGGCGTGGTCAAGGTTTGCAGTAAAAGGGGCCTCACCTGGTGTT CGAGCTGGCCACGCTGCTGTAGGTGTTGGATCTAAGGTCTATGTTATTGGAGGAGTTGGT GATAAGCAATACTACAGTGATGCCTGGATTCTTGATGTTGCAAATCGGTCGTGGACACAG CTTGAGATATGTGGGCAGCAACCGCAAGGACGGTTTTCTCATAGCGCGGTTGTCCTGAAT ACCGATATCGCAATTTACGGAGGGTGTGGTGAAGATGAACGGCCCCTGAATGAGCTGCTC ATTCTTCAGTTGGGCTCTGAGCATCCAAATGGCCGTTACAACATCTCAATGTGCAAAGTT CTAAGCAACCACTGGAGCCAGGAGAGGCGAAAATTCTTGAGAACAGAAAATCAAAGAGAT CCAAACATGAGTAATGGAGAACTTGGTCCAAGATCTCGGGAAGCAGAAATCGAACAAAGA AACCCGTTCTTGCGTGGTCTCGAGAATGGCCATGTGAAAAGGAGGAGAACTGGCGATGTT CGACTGAAAGAGACCGAGTCGGAGCAGGAGGAGCACTCACTATCACTTTCTCAGCACTCT TCACCATCCCAATCTGATCAGGAGCAGAATGGAGCTCAGAAGCTTTCGGCATCTCCTAAC GGATCAATCTCAGCCCTGCAACCGTTTGTTCACCTCAACACCAATGGCACTCTGAGGGCT GCTGGAGGTGTGTCACCGAGGACCCTGAAGACGGATCAGTTCCTCCGCACCATTGCTCCG CAGCAGCGGCATGAAGTGCAGTTCCTAGCAGCTGAACCCAAGCTGCACCACCGCCCGCCT ACTCCACCCCTTATCGGCGCAGAGGTTCATGGGACTATCGATGGAGCTTTCGATTCAGGG TACCTCATGACCGCTGTCGTGAATGGACAGCTCTTCAGAGGCGTCCTTTTCGCTCCTGGT CCGGGAGTAACGGCTCCGAGACCGACGTTGCACCATCCGATTCTGATGAGCTCGGCCATT CCCCCGCAGCAGCAGCAGCAGCGCCCGGTGCTCGCCCACGCCATCCCGGTTCATGCCCGG CCCGTGCCACAGGCGACGGGCTTCGTGCTGCCGGACTGCAGCAACCATGCCCGGCAAGCA TTCCCGGCGTCTGCAGCGGCGGCAGCGGCGAAGATCATCAAGTCTGAACCGGAGAGGGGC GGCAGTGACCTGCACGATGTTGTGCTCACGCTGGGAGGGCCTGGAGCTGGCAAGTGACAC CTCTTTTCTTGTTTTAACACTTGTGATCTTGGCCTCTGATGTTGATCTGTTAATCTGCTC TTGTAAAATAGTCATCCTGGTTGACAAAAATAAGACCAGTAACCTTGTGTAATTGTTCCT GATAATGCCCAATTTTCTTCTTCCTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)