These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1485 fasta sequence [CTCTCCTCCTCTTCTTTTGGCTCCGCCTCGCGCGCCACTCTCCCGCCCAGGCGCCTCTCTCTCTCTCTCTAGTTTCTCGCACCACCTGCCTACATATCGCCACAGCCGCTGTCGTCGTCTCGTCTCTGTGTGTGTGTCTCCATCAGACGCCGGCCATATAGCTAGCGAGACCGGCACATTCCCATCGGGAATCCGCCTCGGGCTTCGCCGCAATCCCACGCTAACTCACGCCGCACCAGATTCACGCTCCCAGCTACAAACTCCCAGCCGCGCGCCGGCCGCACGCGCGTGCGCACAGCTAGCGATCGATCGTGATCGTGACCGCGGCCGGGTTGACTGCCGCTCGACGAGCGCACACATCGATCAGCCGGCCGGACGAGGAGATTGTCAGATCGTCTCGGCTCGTCGACGGATTGGCCATCATGTTCGAGGGGATGGAGAGGGCGGGCTACGGCGTCGGCGTCGGCGGCGCGGGGGCGGTGGGAGCCGGGGTGGTGCTGTCGCGGGACCCCAAGCCGCGGCTGCGGTGGACGCCCGACCTGCACGAGCGCTTCGTCGAGGCCGTCACCAAGCTCGGCGGGCCTGACAAGGCAACCCCCAAGTCGGTGTTGAGACTGATGGGCATGAAAGGTCTCACCTTGTACCACCTCAAGAGCCATCTTCAGAAATATAGGCTTGGAAAGCAGAACAAGAAAGATACAGGCCTAGAAGCCAGCAGAGGAGCATTTGCTGCACATGGCATCAGTTTTGCCTCTGCTGCACCTCCTACCATCCCATCGGCTGAAAATAACAATGCAGGAGAAACGCCACTGGCCGATGCGCTGCGGTATCAAATTGAAGTCCAACGGAAACTGCACGAACAGCTTGAGGTTCAGAAGAAGCTTCAAATGCGAATTGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGCAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAATGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCTAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGACCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATCAGAATATAT] [+] EMBL AK059448 [CTCTCCTCCTCTTCTTTTGGCTCCGCCTCGCGCGCCACTCTCCCGCCCAGGCGCCTCTCTCTCTCTCTCTAGTTTCTCGCACCACCTGCCTACATATCGCCACAGCCGCTGTCGTCGTCTCGTCTCTGTGTGTGTGTCTCCATCAGACGCCGGCCATATAGCTAGCGAGACCGGCACATTCCCATCGGGAATCCGCCTCGGGCTTCGCCGCAATCCCACGCTAACTCACGCCGCACCAGATTCACGCTCCCAGCTACAAACTCCCAGCCGCGCGCCGGCCGCACGCGCGTGCGCACAGCTAGCGATCGATCGTGATCGTGACCGCGGCCGGGTTGACTGCCGCTCGACGAGCGCACACATCGATCAGCCGGCCGGACGAGGAGATTGTCAGATCGTCTCGGCTCGTCGACGGATTGGCCATCATGTTCGAGGGGATGGAGAGGGCGGGCTACGGCGTCGGCGTCGGCGGCGCGGGGGCGGTGGGAGCCGGGGTGGTGCTGTCGCGGGACCCCAAGCCGCGGCTGCGGTGGACGCCCGACCTGCACGAGCGCTTCGTCGAGGCCGTCACCAAGCTCGGCGGGCCTGACAAGGCAACCCCCAAGTCGGTGTTGAGACTGATGGGCATGAAAGGTCTCACCTTGTACCACCTCAAGAGCCATCTTCAGAAATATAGGCTTGGAAAGCAGAACAAGAAAGATACAGGCCTAGAAGCCAGCAGAGGAGCATTTGCTGCACATGGCATCAGTTTTGCCTCTGCTGCACCTCCTACCATCCCATCGGCTGAAAATAACAATGCAGGAGAAACGCCACTGGCCGATGCGCTGCGGTATCAAATTGAAGTCCAACGGAAACTGCACGAACAGCTTGAGGTTCAGAAGAAGCTTCAAATGCGAATTGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGCAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAATGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCTAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGACCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATCAGAATATAT] consensusID : consensus_7530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [AGAGGACGAGACAAGGGGGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGTAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAGTGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCCAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGGCCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATAAGAATATATATACTGTATGAGTATTCGTACCTGCAAAAAAAAAA] [-] EMBL CA762424 [AGAGGACGAGACAAGGGGGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGTAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAGTGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCCAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGGCCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATAAGAATATATATACTGTATGAGTATTCGTACCTGCAAAAAAAAAA] consensusID : consensus_7530#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 219 fasta sequence [ATGGATTGAAGGAGTAGAAAGTTTTAATTAAGAGTTCCCTTTGTCCTATGAGAAATTTTTTTGTGGCGATATTGAGGGTGTTTAAGTACAGTGTTGGTCCAAAGTGTATTAATGTAAAATTTGTGGGGTAAAGGCTTTGAATAATTGTAGCTAATCAATCATGTTTAGATTTGAATATCAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF300074 [ATGGATTGAAGGAGTAGAAAGTTTTAATTAAGAGTTCCCTTTGTCCTATGAGAAATTTTTTTGTGGCGATATTGAGGGTGTTTAAGTACAGTGTTGGTCCAAAGTGTATTAATGTAAAATTTGTGGGGTAAAGGCTTTGAATAATTGTAGCTAATCAATCATGTTTAGATTTGAATATCAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF300075 [ GAAGGAGTAGAAAGTTTT TTTAAGAGTTACCTTTGTCCTATGAGCAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7530#0 CTCTCCTCCTCTTCTTTTGGCTCCGCCTCGCGCGCCACTCTCCCGCCCAGGCGCCTCTCT 60 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 CTCTCTCTCTAGTTTCTCGCACCACCTGCCTACATATCGCCACAGCCGCTGTCGTCGTCT 120 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 CGTCTCTGTGTGTGTGTCTCCATCAGACGCCGGCCATATAGCTAGCGAGACCGGCACATT 180 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 CCCATCGGGAATCCGCCTCGGGCTTCGCCGCAATCCCACGCTAACTCACGCCGCACCAGA 240 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TTCACGCTCCCAGCTACAAACTCCCAGCCGCGCGCCGGCCGCACGCGCGTGCGCACAGCT 300 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 AGCGATCGATCGTGATCGTGACCGCGGCCGGGTTGACTGCCGCTCGACGAGCGCACACAT 360 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 CGATCAGCCGGCCGGACGAGGAGATTGTCAGATCGTCTCGGCTCGTCGACGGATTGGCCA 420 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TCATGTTCGAGGGGATGGAGAGGGCGGGCTACGGCGTCGGCGTCGGCGGCGCGGGGGCGG 480 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TGGGAGCCGGGGTGGTGCTGTCGCGGGACCCCAAGCCGCGGCTGCGGTGGACGCCCGACC 540 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TGCACGAGCGCTTCGTCGAGGCCGTCACCAAGCTCGGCGGGCCTGACAAGGCAACCCCCA 600 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 AGTCGGTGTTGAGACTGATGGGCATGAAAGGTCTCACCTTGTACCACCTCAAGAGCCATC 660 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TTCAGAAATATAGGCTTGGAAAGCAGAACAAGAAAGATACAGGCCTAGAAGCCAGCAGAG 720 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 GAGCATTTGCTGCACATGGCATCAGTTTTGCCTCTGCTGCACCTCCTACCATCCCATCGG 780 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 CTGAAAATAACAATGCAGGAGAAACGCCACTGGCCGATGCGCTGCGGTATCAAATTGAAG 840 consensus_7530#1 ------------------------------------------------------------ consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TCCAACGGAAACTGCACGAACAGCTTGAGGTTCAGAAGAAGCTTCAAATGCGAATTGAGG 900 consensus_7530#1 ---------------------------------AGAGGACGAGACAAGGGGG-----AGG 22 consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 CCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATG 960 consensus_7530#1 CCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATG 82 consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 CAACTGGAACTGCAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTC 1020 consensus_7530#1 CAACTGGAACTGTAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTC 142 consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAATGGAGAGCTAGCGA 1080 consensus_7530#1 TTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAGTGGAGAGCTAGCGA 202 consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 AAGCGATATCTGAAGACAATCTCAGAACTACCAATCTAGGCTTTCAGCTCTACCATGGAA 1140 consensus_7530#1 AAGCGATATCTGAAGACAATCTCAGAACTACCAATCCAGGCTTTCAGCTCTACCATGGAA 262 consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 TTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGA 1200 consensus_7530#1 TTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGA 322 consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 ATATCAAAGGAGGAGGATATGACCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCG 1260 consensus_7530#1 ATATCAAAGGAGGAGGATATGGCCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCG 382 consensus_7530#2 ------------------------------------------------------------ consensus_7530#0 GTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTT 1320 consensus_7530#1 GTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTT 442 consensus_7530#2 ------------------------------------ATGGATTGAAGGA-GTAGAAAGTT 23 * ** ** * * **** consensus_7530#0 TAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTT 1380 consensus_7530#1 TAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTT 502 consensus_7530#2 TTAATTAAGAGTTCCCTTTGTCCTATGAGAAATTTTTTTGTGGCGATATTGAGGGTGTTT 83 * *********** ******************** ********************** ** consensus_7530#0 AAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATA 1440 consensus_7530#1 AAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATA 562 consensus_7530#2 AAGTACAGTGTTGGTCCAAAGTGTATTAATGTAAAATTTGTGGGGTAAAGGCTTTGAATA 143 ****************** ****** *************************** ****** consensus_7530#0 ATCGTAGCTAATCAATCATGTCTAGATCTGAATATCAGAATATAT--------------- 1485 consensus_7530#1 ATCGTAGCTAATCAATCATGTCTAGATCTGAATATAAGAATATATATACTGTATGAGTAT 622 consensus_7530#2 ATTGTAGCTAATCAATCATGTTTAGATTTGAATATCAGAATAAAAAAAAAAAAAAAAAAA 203 ** ****************** ***** ******* ****** * consensus_7530#0 -------------------- consensus_7530#1 TCGTACCTGCAAAAAAAAAA 642 consensus_7530#2 AAAAAAAAAAAAAAAA---- 219 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||