These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1453 fasta sequence [GCAATCCCTATCCACCCATCCTCTGCTCCCTCATCCCCTCCCGTGCGCCGCCGCCACAAACCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGGCCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACCCGGAATTGGAGAAGGCCGAGGATTACGCGTTTCTTGGACGTGAGGTGGATGAGGCTCGCCACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAGTCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCCTCCGTGCCGTCTCTCTACCCCCTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAGCCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCGACAGCGACCCCCGCGACGAGCCTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCACTTGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCATATTTTCAGGTGCCCTGTCGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACTTAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTAATCTGCCTTAGATTATTTTGAAATACTCCTACTGGTTATTGTTGGCTGTGTAGCGATTTGCTGTTTCAAACGAAACGAAAACTGAGCCGGAGGCCCCAGCATTGTCTTTGACGCCTGCATTGACTTCAACTGATGGAGCTCATCAAAGCCGCTCCTTGCTGCTATGGAGAACTCAACTCCGCTAATTGCGCATATGCCAGGGGTGCCAACGAGGAGGCTGTCCAAAGCACTCCAACTCCGTCACCGCTTCTGAAGGAGTTCATCAGTTCAATCGCTGTGGCTGGGTAGACTGCTTCAGCAATGAGCTTGGGAATGGGATTTTGGGGGTGGGGGGGGGGGGCGAACCCCAAGATTGGGTGGCAGCAGCAGATACTCAATCTGGAGGTTTATTTGAAGAGTACGGAGCTTGTGCGTGAGCAAATCATTACTGCGCTAGAAGATCTGAGGTCTTCTTCTGTTGTAGAGTGTGGCATTAGTTTATGCATGTATTATAACATTCCGATTTGTATTCTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTCGGAACATTGATATGTAGATGAAATGAGGGTCAAAGCTGGTCAAAACCTGTAGCTACTTTGTGATGTGATCTATCTTATAAT] [+] EMBL AK119654 [GCAATCCCTATCCACCCATCCTCTGCTCCCTCATCCCCTCCCGTGCGCCGCCGCCACAAACCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGGCCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACCCGGAATTGGAGAAGGCCGAGGATTACGCGTTTCTTGGACGTGAGGTGGATGAGGCTCGCCACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAGTCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCCTCCGTGCCGTCTCTCTACCCCCTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAGCCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCGACAGCGACCCCCGCGACGAGCCTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCACTTGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCATATTTTCAGGTGCCCTGTCGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACTTAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTAATCTGCCTTAGATTATTTTGAAATACTCCTACTGGTTATTGTTGGCTGTGTAGCGATTTGCTGTTTCAAACGAAACGAAAACTGAGCCGGAGGCCCCAGCATTGTCTTTGACGCCTGCATTGACTTCAACTGATGGAGCTCATCAAAGCCGCTCCTTGCTGCTATGGAGAACTCAACTCCGCTAATTGCGCATATGCCAGGGGTGCCAACGAGGAGGCTGTCCAAAGCACTCCAACTCCGTCACCGCTTCTGAAGGAGTTCATCAGTTCAATCGCTGTGGCTGGGTAGACTGCTTCAGCAATGAGCTTGGGAATGGGATTTTGGGGGTGGGGGGGGGGGGCGAACCCCAAGATTGGGTGGCAGCAGCAGATACTCAATCTGGAGGTTTATTTGAAGAGTACGGAGCTTGTGCGTGAGCAAATCATTACTGCGCTAGAAGATCTGAGGTCTTCTTCTGTTGTAGAGTGTGGCATTAGTTTATGCATGTATTATAACATTCCGATTTGTATTCTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTCGGAACATTGATATGTAGATGAAATGAGGGTCAAAGCTGGTCAAAACCTGTAGCTACTTTGTGATGTGATCTATCTTATAAT] [+] EMBL AK121077 [ CCACAAACCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGGCCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACCCGGAATTGGAGAAGGCCGAGGATTACGCGTTTCTTGGACGTGAGGTGGATGAGGCTCGCCACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAGTCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCCTCCGTGCCGTCTCTCTACCCCCTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAGCCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCGACAGCGACCCCCGCGACGAGCCTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCACATGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCATATTTTCAGGTGCCCTGTTGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACTTAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTGATCTGCCTTA ] [+] EMBL AU166241 [ AGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCA NCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCNACANAACCCCCCGCNACGAGCCTGCGCGCNTCGGCCGAGCGTAACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCATTTGTGTGAGTTATGTCTTTTTGTTGTTATATGAAGGAATTGTGTATCATAaaaa ] consensusID : consensus_7539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1191 fasta sequence [TGGGTATGGGGTACCCATAATCTCCACACTCGACTTCACGGCGCGGCGGGGCACCACGTTCGCGTCGCACCAGTACGACACGGGGCCCTTCTACGACGAGATCCGGCGGCGCCTCTCCTTCGACTTCACCAAGAGCCAGCTCGTCGAGAAGCTCCGCCGCCTCAAGAAGAAGTACCGCCTCTGCGCCGCCCGCATGGCCTCCTCCCCCCACGCCGCCGCCGCCGGCTTCGCCTTCAGGACCCCCCACGAGGGCGCCATCTACGACCTCGCCCGCCACATCTGGCCCCCCGCCCTCAAGCGCGACGGCACCGCCTCCGACGACGACGACATCAACCCCGCCGCCGCAGCTGCCACTGCGGCAGTTATGACGCCTGTTGCGATGGAGGATGGTTTCGGCGGAAGCGCCCCTACGCCGACGCCGACGCCGAGGGGCAGGGGAGGGCGGCGCGTCCGGCGGAGAATGGCGCAAGAGCAGGAGGCCGCAGCATTGCCTTCCGCGCCGGCGCTGACCTCAACAGATGGAGCTCATCAGGAGCCGCTTGTCGCGGCCATGGAGAACACATTGCCGCAGATTGCGCAGCTGCCACCGGTGTCGGAGACGGAGCCAATGCCAGTGATTGCCAATGGTGCTAATGAGGAGGCTGTCCGGAGCGTTCTGTCACGTCTACTGAAGGAGTTCATCACCTCATTCGCTGTGGTTGGGCAGACTGGTCCAGGAATGGGCTTAAACATGGGATTTGGGGGTGCTGGATTAAACGCTGATATTGCTGGCCTTGGTTTCGGCATTGCCGGGCTGAACCCTGGGGTGCCCGGTGCTGATAGGTGGAGGCAGCATCAGATACTTGAGCTGGAGGTTTATCTGAAGAGGATTGAGCTTGTGCGTGAGCAAGTCACCGCCGCGCTAGATGAGCTCAGGTCATCGGAAGGTTGATTTGTTCTCTTGTTTCATAGTCCCGTCGATACTTTCTCTCATTAGCAGGGAGTACTTTCAACTTCTTCTGTTGTAGTGTGTGCCATTAGTTGATGCATGTATTATAAAGTTCTGATTGTATACTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTGAGAACATCGATGTGTAGATGAAATGAGGATCAAAGCTGATCAATACTTGTAGCTCTACTTTATCTTATAATTTGATAAAATGCAATGAAGA] [+] EMBL AK072886 [TGGGTATGGGGTACCCATAATCTCCACACTCGACTTCACGGCGCGGCGGGGCACCACGTTCGCGTCGCACCAGTACGACACGGGGCCCTTCTACGACGAGATCCGGCGGCGCCTCTCCTTCGACTTCACCAAGAGCCAGCTCGTCGAGAAGCTCCGCCGCCTCAAGAAGAAGTACCGCCTCTGCGCCGCCCGCATGGCCTCCTCCCCCCACGCCGCCGCCGCCGGCTTCGCCTTCAGGACCCCCCACGAGGGCGCCATCTACGACCTCGCCCGCCACATCTGGCCCCCCGCCCTCAAGCGCGACGGCACCGCCTCCGACGACGACGACATCAACCCCGCCGCCGCAGCTGCCACTGCGGCAGTTATGACGCCTGTTGCGATGGAGGATGGTTTCGGCGGAAGCGCCCCTACGCCGACGCCGACGCCGAGGGGCAGGGGAGGGCGGCGCGTCCGGCGGAGAATGGCGCAAGAGCAGGAGGCCGCAGCATTGCCTTCCGCGCCGGCGCTGACCTCAACAGATGGAGCTCATCAGGAGCCGCTTGTCGCGGCCATGGAGAACACATTGCCGCAGATTGCGCAGCTGCCACCGGTGTCGGAGACGGAGCCAATGCCAGTGATTGCCAATGGTGCTAATGAGGAGGCTGTCCGGAGCGTTCTGTCACGTCTACTGAAGGAGTTCATCACCTCATTCGCTGTGGTTGGGCAGACTGGTCCAGGAATGGGCTTAAACATGGGATTTGGGGGTGCTGGATTAAACGCTGATATTGCTGGCCTTGGTTTCGGCATTGCCGGGCTGAACCCTGGGGTGCCCGGTGCTGATAGGTGGAGGCAGCATCAGATACTTGAGCTGGAGGTTTATCTGAAGAGGATTGAGCTTGTGCGTGAGCAAGTCACCGCCGCGCTAGATGAGCTCAGGTCATCGGAAGGTTGATTTGTTCTCTTGTTTCATAGTCCCGTCGATACTTTCTCTCATTAGCAGGGAGTACTTTCAACTTCTTCTGTTGTAGTGTGTGCCATTAGTTGATGCATGTATTATAAAGTTCTGATTGTATACTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTGAGAACATCGATGTGTAGATGAAATGAGGATCAAAGCTGATCAATACTTGTAGCTCTACTTTATCTTATAATTTGATAAAATGCAATGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7539#0 GCAATCCCTATCCACCCATCCTCTGCTCCCTCATCCCCTCCCGTGCGCCGCCGCCACAAA 60 consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 CCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGG 120 consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 CCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACC 180 consensus_7539#1 --------------------------------TGGGTATGGGGTACCCATAATCTCCACA 28 * ** * * * * *** consensus_7539#0 CGGAATTGGAGAAGGCCGAGGATTAC-GCGTTTCTTGGACGTGAGGTGGATGAGGCTCGC 239 consensus_7539#1 CTCGACTTCACGGCGCGGCGGGGCACCACGTTCGCGTCGCACCAGTACGACACGGGGCCC 88 * * * * ** * ** ** **** * ** ** ** * * consensus_7539#0 CACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAG 299 consensus_7539#1 TTCTACGACGAGATCCGGCGGCGCCTCTCCTTCGACT-TCACCAAGAGCCAGCTC----G 143 * * * ** * ** * * ** ** * * * * * * * consensus_7539#0 TCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCC-TCCGTGCCGTCTCT 358 consensus_7539#1 TCGAGAAGCTCCGCCGCC-TCAAGAAGAAGTACCGCCTCTGCGCCGCCCGCATGGCCTCC 202 *** * * * ** * *** ** ** * * *** * ** *** * *** consensus_7539#0 CTACCCC-CTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTC 417 consensus_7539#1 TCCCCCCACGCCGCCGCCGCCGGCTTCGCCTTCA-GGACCCCCCACGAGGGCGCCATCTA 261 **** * ***** ** * *** ** * * ** ** **** ** * *** consensus_7539#0 CGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGA 477 consensus_7539#1 CGACCTCGCCCGCCACATC--------TGGC----CCCCCGCCCTCAAGCGCGACGGCAC 309 ** * *** ** * * ** ** ** * * ***** *** consensus_7539#0 CAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAG 537 consensus_7539#1 C--GCCTCCGACGACGA-CGACATC---AACCCCGCCGCCGCAGCTGCCAC-TGCGGCAG 362 * ** * *** ** * ** ** * * * **** **** * * *** *** consensus_7539#0 CCTTAGGTTGGTCGCGGCAATTACGG-CGTTGCGCGCGACAGCGACCCCCGCGACGA-GC 595 consensus_7539#1 --TTATGACGCCTGTTGCGATGGAGGATGGTTTCGGCGGAAGCG-CCCCTACGCCGACGC 419 *** * * * ** ** ** * * *** **** **** ** *** ** consensus_7539#0 CTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGA 655 consensus_7539#1 CGACGCCGAGGGGCAGGGGAGGGCGGC--GCGTCC-GGCGGAGAATG-GCGCAAGAGCAG 475 * *** *** * * * ** *** ** *** **** * * *** * consensus_7539#0 TGGTCAACCACTTGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCAT 715 consensus_7539#1 GAGGCCGCAGCAT---TGCCTTCCGCGCCGGCGCTG--ACCTCAACAGATGGAGC----- 525 * * * * * ** ** * * ** * * ** ** * * consensus_7539#0 ATTTTCAGGTGCCCTGTCGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACT 775 consensus_7539#1 -TCATCAGGAGCCGCTT----GTCGCGGCCATGGAGAACACATTGCCGCAGATT---GCG 577 * ***** *** * * * * ****** * * *** ** * consensus_7539#0 TAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTAATCTGCCTTAGATTATTTTG 835 consensus_7539#1 CAGCT-GCCACCGGTGTCGGAGACGGAGCCAATGCCAGTGAT-TGCC------------- 622 **** ** * *** * * * ** **** ** **** consensus_7539#0 AAATACTCCTACTGGTTATTGTTGGCTGTGTAGCGATTTGCTGTTTCAAACGAAACGAAA 895 consensus_7539#1 -AATGGTGCTAATGA-----GGAGGCTGTCCGGAGCGTT-CTGTC---------ACGTCT 666 *** * *** ** * ****** * * ** **** *** consensus_7539#0 ACTGAGCCGGAGGCCCCAGCATTGTCTTTGACGCCTGCATTGACT--TCAACTGATGGAG 953 consensus_7539#1 ACTGAA--GGAGTTCATCACCTCATTCGCTGTGGTTGGGCAGACTGGTCCAGGAATGG-G 723 ***** **** * * * * * ** **** ** * **** * consensus_7539#0 CTCATCAAAGCCGCTCCTTGCTGCTATGGAGAACTCAACTCCGCTAATTGCGCATATGCC 1013 consensus_7539#1 CTTAAACATGGGATTTGGGGGTGCT-----GGATTAAACGCTGATA-TTGC-----TGGC 772 ** * * * * * **** * * * *** * * ** **** ** * consensus_7539#0 AGGGGTGCCAACGAGGAGGCTGTCCAAAGCACTCCAACTCCGTCACCGCTTCTGAAGGAG 1073 consensus_7539#1 CTTGGTTTCGGCATT---GCCGGGCTGAACCCTGGGGTGCC--CGGTGCTGATAGGTGGA 827 *** * * ** * * * * ** ** * *** * * consensus_7539#0 TTCATCAGTTCAATCGCTGTGGCTGGGTAGACTGCTTCAGCAATGAGCTTGGGAATGGGA 1133 consensus_7539#1 GGCAGCA--TCAGATACTTGAGCTGG--AGGTTTATCTGAAGA--------GGATTGAGC 875 ** ** *** ** ***** ** * * * *** ** * consensus_7539#0 TTTTGGGGGTGGGGGGGGGGGGCGAACCCCAAGATTGGGTGGCAGCAGCAGATACTCAAT 1193 consensus_7539#1 TTGTGCGTGAGCAAGTCACCGCCG---CGCTAGATGAGCTCAGGTCATCGGAAGGTTGAT 932 ** ** * * * * * ** * * **** * * ** * ** * ** consensus_7539#0 CTGGAGGTTTATTTGAAGAGTACGGAGCTTGTGCGTGAGCAAATCATTACTGCGCTAGAA 1253 consensus_7539#1 TTGTTCTCTTGTTTCATAGTCCCGTCGATACTTTCTC------TCATTA----GCAGGGA 982 ** ** *** * ** * * * * ****** ** * * consensus_7539#0 GATCTGAGGTCTTCTTCTGTTGTAGAGTGTGGCATTAGTTTATGCATGTATTATAACATT 1313 consensus_7539#1 GTACTTTCAACTTCTTCTGTTGTAGTGTGTGCCATTAGTTGATGCATGTATTATAAAGTT 1042 * ** *************** ***** ******** *************** ** consensus_7539#0 CCGATTTGTATTCTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTCG 1373 consensus_7539#1 CTGATT-GTATACTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTGA 1101 * **** **** ********************************************** consensus_7539#0 GAACATTGATATGTAGATGAAATGAGGGTCAAAGCTGGTCAAAACCTGTAGCT--ACTTT 1431 consensus_7539#1 GAACATCGATGTGTAGATGAAATGAGGATCAAAGCTGATCAATACTTGTAGCTCTACTTT 1161 ****** *** **************** ********* **** ** ******* ***** consensus_7539#0 GTGATGTGATCTATCT---TATAAT----- 1453 consensus_7539#1 ATCTTATAATTTGATAAAATGCAATGAAGA 1191 * * * ** * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||