These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1057 fasta sequence [CACTGCACTCCAAACCACACAGCCTCCTCGTCTCGTCTTCTGTCTCGCGCGCGCACGCCACTCGCTGGGAGCTCATGGAGGTCGGCTCGCTGCAGCACCTCGGCGACAGCTTCTCCTACCGGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGATGTCGGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGGACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCCGCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGCCGTCTACTTCCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACAGCGATGCCGCTCGCGTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCGCAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGCGCCAGCAAGAACGCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGC-GGCGGGTCATCGCCGTGGAAGATACTGCTCAGGTACCTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCGCCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGGGCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCCATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAATCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTTGTTTTTTCCACCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGCATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCCCTTTCTTGTCTTTCTCGTTTGTCTTTGGCCATGTGAAAAAA] [+] EMBL AK119960 [CACTGCACTCCAAACCACACAGCCTCCTCGTCTCGTCTTCTGTCTCGCGCGCGCACGCCACTCGCTGGGAGCTCATGGAGGTCGGCTCGCTGCAGCACCTCGGCGACAGCTTCTCCTACCGGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGATGTCGGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGGACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCCGCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGCCGTCTACTTCCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACAGCGATGCCGCTCGCGTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCGCAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGCGCCAGCAAGAACGCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGC GGCGGGTCATCGCCGTGGAAGATACTGCTCAGGTACCTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCGCCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGGGCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCCATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAATCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTTGTTTTTTCCACCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGCATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCC ] [+] EMBL CA754672 [ TCCTACCGGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGATGTCGGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGGACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCCGCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGGCGTCTACTTCCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACGGCGATGCCGCTCGCGTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCGCAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGGGCCAGCAAGAACGCCAGCGCGGCGCCACTGCTCGCCGCGGGGAGGCGTGGCGGGCGGGTCATCGCCGTGGAAGATACTGCTCAGGTACCTGGGGGTCCTCATGCCGCTCTACCGGAGGGTCAGGG GCTGCCGGCCCTGCGTGCTCCCAAGAAGAGGGTCTCCCCGGCGAGCCCCGC AGCGCGAGAG GAGGGCGTCC CGT ] [+] EMBL AU101323 [ AGCACGCCGGCCTCGCTGAGCTCGTNGTCCAGCGCGAGGANCGGCGCCAGCAAGAACGCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGC GNNGGGTCATCGCCGTGGAAGATACTGCTCAGGTA CTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCGCCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGGGCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCCATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAATCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTCGTTTTTTCCACCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGCATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCCCTTTCTTGTCTTTCTCGTTTGTCTTTGGCCATGTGAAAAAA] consensusID : consensus_7545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TNTTCTGTCTCGCGCGCGCACGCACTCGCTGGGAGCTCATNGANGTCGGCTCGCTGCAGCACCTCGGCGACAGTTCTCCTACCGGTNGCTCAAGCACNCGGCGCAGGCNTCGTTTNCAAGCGCCTNGTCGACGACGATTGTCGGCGTAAGTCCAGGTACTTCATCGACATGGACCCCNCCGACCTACTNTNCATGCGGTGGACGGCTNCGGGCACCGACTTCGACTTCGACTT] [+] EMBL OSC766 [TNTTCTGTCTCGCGCGCGCACGCACTCGCTGGGAGCTCATNGANGTCGGCTCGCTGCAGCACCTCGGCGACAGTTCTCCTACCGGTNGCTCAAGCACNCGGCGCAGGCNTCGTTTNCAAGCGCCTNGTCGACGACGATTGTCGGCGTAAGTCCAGGTACTTCATCGACATGGACCCCNCCGACCTACTNTNCATGCGGTGGACGGCTNCGGGCACCGACTTCGACTTCGACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7545#0 CACTGCACTCCAAACCACACAGCCTCCTCGTCTCGTCTTCTGTCTCGCGCGCGCACGCCA 60 consensus_7545#1 -----------------------------------TNTTCTGTCTCGCGCGCGCACGC-A 24 * ********************* * consensus_7545#0 CTCGCTGGGAGCTCATGGAGGTCGGCTCGCTGCAGCACCTCGGCGACAGCTTCTCCTACC 120 consensus_7545#1 CTCGCTGGGAGCTCATNGANGTCGGCTCGCTGCAGCACCTCGGCGACAG-TTCTCCTACC 83 **************** ** ***************************** ********** consensus_7545#0 GGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGAT-GTC 179 consensus_7545#1 GGTNGCTCAAGCACNCGGCGCAGGCNTCGTT-TNCAAGCGCCTNGTCGACGACGATTGTC 142 *** ********** ********** *** * ********* ************ *** consensus_7545#0 GGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGG 239 consensus_7545#1 GGCGTAAG-TCCAGGTACTTCATCGACATGGACCCCNCCGACCTACTNTNCATGCGGTGG 201 **** *** *************************** ******* * * ********** consensus_7545#0 ACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCC 299 consensus_7545#1 ACGGCTNCGGGCACCGACTTCGACTTCGACTT---------------------------- 233 ****** ************************* consensus_7545#0 GCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGCCGTCTACTT 359 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 CCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACAGCGATGCCGCTCGC 419 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 GTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCG 479 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 CAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGCGCCAGCAAGAAC 539 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 GCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGCGGCGGGTCATCGCCGTGGAAG 599 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 ATACTGCTCAGGTACCTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCG 659 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 CCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGG 719 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 GCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCC 779 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 ATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAA 839 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 TCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTTGTTTTTTCCA 899 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 CCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGC 959 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 ATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCCCTT 1019 consensus_7545#1 ------------------------------------------------------------ consensus_7545#0 TCTTGTCTTTCTCGTTTGTCTTTGGCCATGTGAAAAAA 1057 consensus_7545#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||