These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 927 fasta sequence [GCGTAGATCTCCCCCATTAGGCTCGTGTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCGACGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTCATCGACCTCGGCCGCGGCGGGCCGACGGCGGCGCCGGGG-AAGCCGAGGCTGGTGATGATCATCGCCGACCCGGGGCGCGAGTCGACGGCGGCGATGGAGTGGGCGCTCTCGCACGCCGTCGCCGAGGGGGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCCGTCGCGCACCGGCTCCGGCGGGAGCGCCGGGTCCCCGCTCACGGCGCTCCTCGGCGCCGGCGCCGCGGGGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCCGCGCGCCCGCGTCCGCGCCCTGCGCGTCGAGCCCGCCACCGAGGGCCGCGAGGCCAAGGCCCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGTCATCGGCCACCGCCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAGCACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGGGCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTGATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAATGGATCGAACAAAAGCTCCAAAAAC-TTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAGAAACAACGAATCGAGAAAAGCAAAATAAAGTGTTGTTTTGTTTTT] [+] EMBL AK109194 [GCGTAGATCTCCCCCATTAGGCTCGTGTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCGACGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTCATCGACCTCGGCCGCGGCGGGCCGACGGCGGCGCCGGGG AAGCCGAGGCTGGTGATGATCATCGCCGACCCGGGGCGCGAGTCGACGGCGGCGATGGAGTGGGCGCTCTCGCACGCCGTCGCCGAGGGGGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCCGTCGCGCACCGGCTCCGGCGGGAGCGCCGGGTCCCCGCTCACGGCGCTCCTCGGCGCCGGCGCCGCGGGGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCCGCGCGCCCGCGTCCGCGCCCTGCGCGTCGAGCCCGCCACCGAGGGCCGCGAGGCCAAGGCCCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGTCATCGGCCACCGCCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAGCACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGGGCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTGATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAATGGATCGAACAAAAGCTCCAAAAAC TTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAGAAACAACGAATCGAGAAAAGCAAAATAAAGTGTTGTTTTGTTTTT] [+] EMBL C73382 [ GCTCGTNTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCNACGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTNATCGACCTCGGCCGCGGCGGGCCGACGGCGGCGCCGGGGAAAGCCGAGGCTGGTNATGATCATCGCCGACCCGGGGCGCNATTCGACGGCGGCNATGGAGTNGGCGCTCTCGCACGCCGTCGCCGAGGGGGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCCGT ] [+] EMBL AU094301 [ CATCGGCCACCGCCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAGCACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGGGCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTGATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAATGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAAAAA ] consensusID : consensus_7548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [GCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTNAATGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAAANNAANANNGAAANNAANAAAAANTANNC] [+] EMBL AU094159 [GCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTNAATGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAAANNAANANNGAAANNAANAAAAANTANNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7548#0 GCGTAGATCTCCCCCATTAGGCTCGTGTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCGA 60 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 CGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTCATCGACCT 120 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 CGGCCGCGGCGGGCCGACGGCGGCGCCGGGGAAGCCGAGGCTGGTGATGATCATCGCCGA 180 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 CCCGGGGCGCGAGTCGACGGCGGCGATGGAGTGGGCGCTCTCGCACGCCGTCGCCGAGGG 240 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 GGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCC 300 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 GTCGCGCACCGGCTCCGGCGGGAGCGCCGGGTCCCCGCTCACGGCGCTCCTCGGCGCCGG 360 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 CGCCGCGGGGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCC 420 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 GCGCGCCCGCGTCCGCGCCCTGCGCGTCGAGCCCGCCACCGAGGGCCGCGAGGCCAAGGC 480 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 CCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGTCATCGGCCACCG 540 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 CCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAG 600 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 CACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGG 660 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 GCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTG 720 consensus_7548#1 ------------------------------------------------------------ consensus_7548#0 ATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAA 780 consensus_7548#1 ---------------GCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTNAA 45 ****************************************** ** consensus_7548#0 TGGATCGAACAAAAGCTCCAAAAACTTTTTTTTT--GATTCTTCTCGCAGCAATGCTTGT 838 consensus_7548#1 TGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGT 105 ********************************** ************************ consensus_7548#0 GTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAGAAACAACGAATCGAGA 898 consensus_7548#1 GTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAAAAAAAAAAAAAAAAAAAAAAA 165 *************************************** * *** ** ** * * consensus_7548#0 AAAGCAAAATAAAGTGTTGTT-TTGTTTTT-------------- 927 consensus_7548#1 AAAAAAAANAANAAAANNAANANNGAAANNAANAAAAANTANNC 209 *** *** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||