These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1848 fasta sequence [ATTGCATGCACTCATCATTTCTTCTTCTTCTTCCTCGCCGCCCCGCCCCGCCCGCACGCCATATTCTTCTTGCAAATCAATTAGCAACAGAGCTGCAGCCAAATTGTGCAGATTAATTAGCTGTGGAGCGAGCTGTTGCTGACATTGATTTTGTTTTGTTGGATTTGCTGTGCAGGCGGCCACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACAAACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGTATTACTTCAAGAATAAGCCCGACGACAATGCCGCCGCCGCATCCGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCTTCAGCGAGCTGGAGACCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCTCCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACGCCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGCACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCCGCAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCTGGTCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAGCGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAGTTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCCGCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCCGCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTACGACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTAACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATCATTAGCCATGCAATTAAGCTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCT-C-TTAGCTATATCCATTATTCCTTAATCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTATATATGATATGATC] [+] EMBL AK120063 [ATTGCATGCACTCATCATTTCTTCTTCTTCTTCCTCGCCGCCCCGCCCCGCCCGCACGCCATATTCTTCTTGCAAATCAATTAGCAACAGAGCTGCAGCCAAATTGTGCAGATTAATTAGCTGTGGAGCGAGCTGTTGCTGACATTGATTTTGTTTTGTTGGATTTGCTGTGCAGGCGGCCACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACAAACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGTATTACTTCAAGAATAAGCCCGACGACAATGCCGCCGCCGCATCCGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCTTCAGCGAGCTGGAGACCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCTCCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACGCCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGCACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCCGCAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCTGGTCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAGCGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAGTTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCCGCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCCGCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTACGACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTAACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATCATTAGCCATGCAATTAAGCTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCT C TTAGCTATATCCATTATTCCTTAATCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTATATATGATATGATC] [-] EMBL CB645227 [ AGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTAACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATCATTAGCCATGCAATTAAGCTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTACGGGAGCTATATCCATTATTCCTTAATC ] [+] EMBL BI795397 [ ccgGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCT C TTAGCTATATCCATTATTCCTTAATCCTTACATGTTAAaaaaa ] consensusID : consensus_7551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [CTNCCCNNTGNANCGATTAGCCNTGCAATTAAGCTNCTTCTGCTGCTTAANAGNTCTCTGTCTCNCGTCTCANCGTCTCCTCTNATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATANCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATANCCATTANTCCTTAANCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTAAAAAAAAAAAAAAAAAA] [+] EMBL AU067905 [CTNCCCNNTGNANCGATTAGCCNTGCAATTAAGCTNCTTCTGCTGCTTAANAGNTCTCTGTCTCNCGTCTCANCGTCTCCTCTNATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATANCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATANCCATTANTCCTTAANCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7551#0 ATTGCATGCACTCATCATTTCTTCTTCTTCTTCCTCGCCGCCCCGCCCCGCCCGCACGCC 60 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 ATATTCTTCTTGCAAATCAATTAGCAACAGAGCTGCAGCCAAATTGTGCAGATTAATTAG 120 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CTGTGGAGCGAGCTGTTGCTGACATTGATTTTGTTTTGTTGGATTTGCTGTGCAGGCGGC 180 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACA 240 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 AACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGTATTACTTCAAGAATAAGC 300 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CCGACGACAATGCCGCCGCCGCATCCGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCT 360 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 TCAGCGAGCTGGAGACCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCT 420 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACG 480 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGC 540 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 ACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCC 600 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GCAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCT 660 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GGTCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAG 720 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAG 780 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 TTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCC 840 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCC 900 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTAC 960 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCG 1020 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCC 1080 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGG 1140 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 TGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAG 1200 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 AAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCC 1260 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAG 1320 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCG 1380 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 CCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGC 1440 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTT 1500 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 GGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTA 1560 consensus_7551#1 ------------------------------------------------------------ consensus_7551#0 ACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATC-ATTAGCCATGCAATTAAG 1619 consensus_7551#1 ---------------------------CTNCCCNNTGNANCGATTAGCCNTGCAATTAAG 33 * ** * * ******* ********** consensus_7551#0 CTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATC 1679 consensus_7551#1 CTNCTTCTGCTGCTTAANAGNTCTCTGTCTCNCGTCTCANCGTCTCCTCTNATTCTCATC 93 ** ************** ** ***** **** ******* ********** ********* consensus_7551#0 TGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCAT 1739 consensus_7551#1 TGCACAAAGAGAGAGAGAGAGAGATAGTGATANCTTGGCTGGGCTCACAAGTCACAGCAT 153 ******************************** *************************** consensus_7551#0 TTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATATCCATTATTCCTTAATCCT 1799 consensus_7551#1 TTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATANCCATTANTCCTTAANCCT 213 ***************************************** ****** ******* *** consensus_7551#0 TACATGTTAATTAGTGAGTACTGCTTTTTCGCTTATATATGATATGATC--- 1848 consensus_7551#1 TACATGTTAATTAGTGAGTACTGCTTTTTCGCTTAAAAAAAAAAAAAAAAAA 265 *********************************** * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||