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Oryza sativa
cluster # 7552 cluster # 7552       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7552#0 length = 1442 sequences # 3  
consensus_7552#1 length = 636 sequences # 1  

consensusID : consensus_7552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1442
fasta sequence
                              [CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCTTGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGGAAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAA-GCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTA-GTTGTATTTTACATCAGTGTGCATTGTTAGAAA-CTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGCAACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA]

[+] EMBL AK071955             [CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCTTGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGGAAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAA GCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTA GTTGTATTTTACATCAGTGTGCATTGTTAGAAA CTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGCAACAAGATTATGTTCATGTGCTGTAGGATT           ]
[+] EMBL CB631158             [                                                                                                                                                                                                AGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAAGGCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI799982             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTACGTTGTATTTTACATCAGTGTGCATTGTTAGAAACCTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCC AACTGCAACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA]


>consensus_7552#0 CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCT TGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGG AAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAA AGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAA GCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTC GCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAAGCGGTGCAGCTGGTGCTCGGCG GCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGC CGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGG ACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGG AGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACG ATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCG AGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGA TAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGG ATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAA GACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGG AATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTG TGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAG TTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCT ACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGG TCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACATCAGT GTGCATTGTTAGAAACTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCG TAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATA GAATAGATATATCCAAACTGCAACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAA AA



consensusID : consensus_7552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence
                              [TGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACCCTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGAGNTTAAATCAGNTCACATTTCTTAG]

[+] EMBL CA763864             [TGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACCCTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGAGNTTAAATCAGNTCACATTTCTTAG]


>consensus_7552#1 TGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGAC CATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAA CCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGA GATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGA ACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGC AGGGAAGATAGTTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGT TGTTTTAAACCCTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTT GTTAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGC AGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGAT GTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGT AGAAACTTAGAGNTTAAATCAGNTCACATTTCTTAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7552#0      CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCT 60
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      TGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGG 120
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      AAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAG 180
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      AGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAA 240
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      AGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAA 300
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      GCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTC 360
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      GCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAAGCGGTGCAGCTGGTGCTCGGCG 420
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      GCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGC 480
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      CGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGG 540
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      ACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGG 600
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      AGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACG 660
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      ATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCG 720
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      AGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGA 780
consensus_7552#1      -------------------------------------------------TGACAAGGAGA 11
                                                                       ***********

consensus_7552#0      TAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGG 840
consensus_7552#1      TAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGG 71
                      ************************************************************

consensus_7552#0      ATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAA 900
consensus_7552#1      ATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAA 131
                      ************************************************************

consensus_7552#0      GACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGG 960
consensus_7552#1      GACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGG 191
                      ************************************************************

consensus_7552#0      AATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTG 1020
consensus_7552#1      AATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTG 251
                      ******************* ****************************************

consensus_7552#0      TGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAG 1080
consensus_7552#1      TGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAG 311
                      ************************************************************

consensus_7552#0      TTCACCGTGACAAAG--------------------------------------------- 1095
consensus_7552#1      TTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACC 371
                      ***************                                             

consensus_7552#0      ------------------------------------------------------TCGTCC 1101
consensus_7552#1      CTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCC 431
                                                                            ******

consensus_7552#0      GATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGC 1161
consensus_7552#1      GATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGC 491
                      ************************************************************

consensus_7552#0      CTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAAC 1221
consensus_7552#1      CTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAAC 551
                      ************************************************************

consensus_7552#0      AGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACATCAGTGTGCATTGTTAGAAACTTAGA 1281
consensus_7552#1      AGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGA 611
                      ********************************* ************* ************

consensus_7552#0      GTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCA 1341
consensus_7552#1      GNTTAAATCAGNTCACATTTCTTAG----------------------------------- 636
                      * ********* *************                                   

consensus_7552#0      TCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGC 1401
consensus_7552#1      ------------------------------------------------------------
                                                                                  

consensus_7552#0      AACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA 1442
consensus_7552#1      -----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)