These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence [TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCCTTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTAT--GGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGGATACCGTTGACCGTCGCGCAGGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTCACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTGTTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAATTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA] [+] EMBL CA761524 [TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCCTTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTAT GGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGGATACCGTTGACCGTCGCGCAGG ] [+] EMBL AU068526 [ CATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTATTGGGTCCG GCGGCGCCGCGACTGATGCGGTGAGCGTGATTCAGACAAGCGGTGG AGCGGCTACCGTCG TCGTCGCGCAAGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTCACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTGTTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAATTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA] consensusID : consensus_7553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATGCAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTGCATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATCAAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCAACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTATGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGGGGGAACGGGTACCGTCGTCGTCGCGCAAGGAGATTATCCCCCTTGTCTTCGGCCTGGGTCACCTAAACAGGCTTAT] [+] EMBL CA761182 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATGCAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTGCATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATCAAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCAACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTATGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGGGGGAACGGGTACCGTCGTCGTCGCGCAAGGAGATTATCCCCCTTGTCTTCGGCCTGGGTCACCTAAACAGGCTTAT] consensusID : consensus_7553#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [CTAGTTCTCTCTCTTCTTTCTCTGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAA] [+] EMBL AU068527 [CTAGTTCTCTCTCTTCTTTCTCTGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7553#0 TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCC 60 consensus_7553#2 ------------------------------------------------------------ consensus_7553#1 ----------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTT 26 consensus_7553#0 TTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATG 120 consensus_7553#2 ------------------------------CTAGTTCTCTCTCTTCTTTCTCTGCAGATG 30 consensus_7553#1 TTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATG 86 * * ** * * * *** *** consensus_7553#0 CAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCAT 180 consensus_7553#2 CAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCAT 90 consensus_7553#1 CAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCAT 146 *************** *********************************** ******** consensus_7553#0 GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 240 consensus_7553#2 GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 150 consensus_7553#1 GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 206 ************************************************************ consensus_7553#0 CTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTG 300 consensus_7553#2 CTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTG 210 consensus_7553#1 CTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTG 266 **** ***************** **************** ******************** consensus_7553#0 CATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCA 360 consensus_7553#2 CATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCA 270 consensus_7553#1 CATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCA 326 ********** *********** ************** ********************** consensus_7553#0 ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATC 420 consensus_7553#2 ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATC 330 consensus_7553#1 ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATC 386 *********************************************** ************ consensus_7553#0 AGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCA 480 consensus_7553#2 AGAATGCCATCTACAAGAA----------------------------------------- 349 consensus_7553#1 AAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCA 446 * ************** ** consensus_7553#0 ACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCC 540 consensus_7553#2 ------------------------------------------------------------ consensus_7553#1 ACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCC 506 consensus_7553#0 CTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTA 600 consensus_7553#2 ------------------------------------------------------------ consensus_7553#1 CTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTA 566 consensus_7553#0 TGGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGG 660 consensus_7553#2 ------------------------------------------------------------ consensus_7553#1 TGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGG-GGGAACGG 625 consensus_7553#0 ATACCGTTGACCGTCGCGCAGGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTC 720 consensus_7553#2 ------------------------------------------------------------ consensus_7553#1 GTACCGTCG-TCGTCGCGCAAGGAGATTATCCCCCTT--GTCTTCGGCCTGGGTCACCTA 682 consensus_7553#0 ACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTG 780 consensus_7553#2 ------------------------------------------------------------ consensus_7553#1 AACAGGCTTAT------------------------------------------------- 693 consensus_7553#0 TTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAA 840 consensus_7553#2 ------------------------------------------------------------ consensus_7553#1 ------------------------------------------------------------ consensus_7553#0 TTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA 876 consensus_7553#2 ------------------------------------ consensus_7553#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||