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Oryza sativa
cluster # 7553 cluster # 7553       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7553#0 length = 876 sequences # 2  
consensus_7553#1 length = 693 sequences # 1  
consensus_7553#2 length = 349 sequences # 1  

consensusID : consensus_7553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 876
fasta sequence
                              [TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCCTTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTAT--GGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGGATACCGTTGACCGTCGCGCAGGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTCACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTGTTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAATTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA]

[+] EMBL CA761524             [TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCCTTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTAT  GGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGGATACCGTTGACCGTCGCGCAGG                                                                                                                                                                                                  ]
[+] EMBL AU068526             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTATTGGGTCCG GCGGCGCCGCGACTGATGCGGTGAGCGTGATTCAGACAAGCGGTGG AGCGGCTACCGTCG TCGTCGCGCAAGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTCACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTGTTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAATTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA]


>consensus_7553#0 TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCC TTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATG CAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCAT GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA CTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTG CATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCA ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATC AGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCA ACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCC CTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTA TGGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGG ATACCGTTGACCGTCGCGCAGGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTC ACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTG TTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAA TTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA



consensusID : consensus_7553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATGCAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTGCATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATCAAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCAACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTATGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGGGGGAACGGGTACCGTCGTCGTCGCGCAAGGAGATTATCCCCCTTGTCTTCGGCCTGGGTCACCTAAACAGGCTTAT]

[+] EMBL CA761182             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATGCAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTGCATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATCAAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCAACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTATGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGGGGGAACGGGTACCGTCGTCGTCGCGCAAGGAGATTATCCCCCTTGTCTTCGGCCTGGGTCACCTAAACAGGCTTAT]


>consensus_7553#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAAACACCATGATTCTAACATATTTCA TACTTTGGTTCTTGAACAAGCAAATGCAATATGGCTAACAGGGGCACAAGCACCAATAGG TCAATCTGGGATGCCAGGGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACC CCTTTTGCAGCTTCATGTAACAACCACTCTTACGGTTATCACTTATCACCAAAGAGCTCA AGCTGGGCCTTATCTTCCTGCAGCTGCATCCTATCACCAAGGAGCTCAGGCTGGGCCATA TTGGGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGC TGGCTAACCATCTTCAGGTTATGATCAAAATGCCATCTACAAAAATCCTGCCTACCCTGA TGATCATGATCAGAATGCCATTTCCAACAATCCTGCAAACCACCATGCTGGCTATGATCA GAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTTAGAATGTCTACTCC AACTATCAAGGGTACCAGGCAGCTTATGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGC GTGTTTCACACAAGCGGGGGAACGGGTACCGTCGTCGTCGCGCAAGGAGATTATCCCCCT TGTCTTCGGCCTGGGTCACCTAAACAGGCTTAT



consensusID : consensus_7553#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence
                              [CTAGTTCTCTCTCTTCTTTCTCTGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAA]

[+] EMBL AU068527             [CTAGTTCTCTCTCTTCTTTCTCTGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAA]


>consensus_7553#2 CTAGTTCTCTCTCTTCTTTCTCTGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAA TAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTAT AACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAG CTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGC CATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGA ATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7553#0      TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCC 60
consensus_7553#2      ------------------------------------------------------------
consensus_7553#1      ----------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTT 26
                                                                                  

consensus_7553#0      TTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATG 120
consensus_7553#2      ------------------------------CTAGTTCTCTCTCTTCTTTCTCTGCAGATG 30
consensus_7553#1      TTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATG 86
                                                     *  * ** *   *  *      *** ***

consensus_7553#0      CAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCAT 180
consensus_7553#2      CAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCAT 90
consensus_7553#1      CAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCAT 146
                      *************** *********************************** ********

consensus_7553#0      GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 240
consensus_7553#2      GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 150
consensus_7553#1      GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 206
                      ************************************************************

consensus_7553#0      CTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTG 300
consensus_7553#2      CTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTG 210
consensus_7553#1      CTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTG 266
                      **** ***************** **************** ********************

consensus_7553#0      CATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCA 360
consensus_7553#2      CATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCA 270
consensus_7553#1      CATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCA 326
                      ********** *********** ************** **********************

consensus_7553#0      ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATC 420
consensus_7553#2      ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATC 330
consensus_7553#1      ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATC 386
                      *********************************************** ************

consensus_7553#0      AGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCA 480
consensus_7553#2      AGAATGCCATCTACAAGAA----------------------------------------- 349
consensus_7553#1      AAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCA 446
                      * ************** **                                         

consensus_7553#0      ACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCC 540
consensus_7553#2      ------------------------------------------------------------
consensus_7553#1      ACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCC 506
                                                                                  

consensus_7553#0      CTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTA 600
consensus_7553#2      ------------------------------------------------------------
consensus_7553#1      CTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTA 566
                                                                                  

consensus_7553#0      TGGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGG 660
consensus_7553#2      ------------------------------------------------------------
consensus_7553#1      TGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGG-GGGAACGG 625
                                                                                  

consensus_7553#0      ATACCGTTGACCGTCGCGCAGGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTC 720
consensus_7553#2      ------------------------------------------------------------
consensus_7553#1      GTACCGTCG-TCGTCGCGCAAGGAGATTATCCCCCTT--GTCTTCGGCCTGGGTCACCTA 682
                                                                                  

consensus_7553#0      ACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTG 780
consensus_7553#2      ------------------------------------------------------------
consensus_7553#1      AACAGGCTTAT------------------------------------------------- 693
                                                                                  

consensus_7553#0      TTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAA 840
consensus_7553#2      ------------------------------------------------------------
consensus_7553#1      ------------------------------------------------------------
                                                                                  

consensus_7553#0      TTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA 876
consensus_7553#2      ------------------------------------
consensus_7553#1      ------------------------------------
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)