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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1736 fasta sequence
[ATTCGCACAACCAATCTCTTCTTGCTTCCTCCTCCTCCTCCTCCAGCCGCCGCCGCCGACGACGATTCTTGGTAGAGAGATTCTTGCGTTGTTTTACCTGCGTCTTGTTCTTCTTGGGAGTTGGGTGGATCGATTGATCGAGGTTTTGGAGGTTGGAAGAAGTGTGTGTTGTGGTGGGGGGTTTGTAGAGAGAGAGAGGGCAAAGGCACGCAAAGAGGGAGAGAGTGAGGAGAGATGGCGGCGGAGGGAGGGAGGTGTCAGAAGAGCTACTTCGACGTGCTGGGGATTTGCTGCCCGTCGGAGGTTCCCCTCGTCGAGAAGCTTCTGCAGCCGCTGGAGGGCGTCCAGAAGGTCACCGTGATCGTTCCCCCCAGGACGGTCATCGTCGTCCACGACGTCGACGCCATCTCCCAATCCCAAATCGTCAAGGCGCTGAATCAGGCAAGGTTGGAGGCGTCGGTTCGGGCTTATGGGAACGGCAGTGAGAAGATCACCAACAAATGGCCGAGCCCGTATGTTCTCCTCTGCGGACTTCTTCTGGTCGTGTCGCTGTTCGAGCATTTCTGGCACCCGCTCAAGTGGTTCGCGCTGGTGGCTGCGGCCGCCGGCTTGCCGCCGATCGTGCTGAGGAGCATTGCGGCCATCCGGAGACTCACCCTGGATGTCAACATACTCATGCTGATTGCTGGTAAGAACAGCCTATAATTCACCTGTGACATTAATGATGTTTCCTGTTATTGGTACCTTGAAAAAAAAAGAAGCTCCCTTTTGTTGGAGGATGGCCCTGACCATCACCTCCGACGATCGAAGACCCTTTGATCTTTAGGAGATAACTGAATTATAAAATTTTAAATAGGCTTCCTTCATCTGGTGGCCTAATGCATGCATTTTGGCTTGTACCAAAACCTACTTTCTCTCTTTAATGAAATGAAAAGCAGAGGTCCCACCATACTTTTTGAAAAGAAATGAACGTTTAAATAGTATCGAATGGTAGCAAACACATCTGCCATTAAGGATATCCTCCAATTGAATAGTCTCATTTGAAATAAGAAAACAAATTATTGACACAGCTTAGTAGTAGAGCATTGAGTTTTAACGTTGATGCCATGGGTTTGAAGCTTTTTTTTTCTGTATTAAAAGGGCAACAGTATACTTGTTCCTTTTTTTTACCATAGTATTCTCTTGTGTGTAGAAGACACAAATACAACACCACTTTGGGTAAATATTCAACTACGGATTGAAGTTGTGGGTATTATTGATACCTGTTCTACCAGTGTGACAATGGGTTGTGAAAAAAAAAGAGACAAAAGCAAGTTTCTTCACGAGGACCAATATGGTGGGTGATTAGTGGGAGAGCAGAAGCAGAAATCCATCTCTCAAAAGTTTATGTCTCACTTGCATAAACTTTTGCTTTCTTTTCTTTTCTAGAGGGTCCCTCACTTTCCATCACATCAAAAGGATATGTTGCTGTGATGCTAATATACGTGCTAGATGAACAATTCTGCTTCTTTTCCTCCATGTGGCGATGTCACCTCAGATAGGGCATCAGATTCCTTTTAGAACAAGCAACATATTTCTTATCAAGAAGCTACACATATTTCGAATAATTCTTTCTAGACTAATATCGTGGCATTGAGATAGCTCTATTGTGATATGCATATGGGAATATGGGATACATGAAAGAATCATCAAAAGAAACAAGAAATACCTTGTTTCAAAAAGAAAAAAAGATTTGG]
[+] EMBL AK107235 [ATTCGCACAACCAATCTCTTCTTGCTTCCTCCTCCTCCTCCTCCAGCCGCCGCCGCCGACGACGATTCTTGGTAGAGAGATTCTTGCGTTGTTTTACCTGCGTCTTGTTCTTCTTGGGAGTTGGGTGGATCGATTGATCGAGGTTTTGGAGGTTGGAAGAAGTGTGTGTTGTGGTGGGGGGTTTGTAGAGAGAGAGAGGGCAAAGGCACGCAAAGAGGGAGAGAGTGAGGAGAGATGGCGGCGGAGGGAGGGAGGTGTCAGAAGAGCTACTTCGACGTGCTGGGGATTTGCTGCCCGTCGGAGGTTCCCCTCGTCGAGAAGCTTCTGCAGCCGCTGGAGGGCGTCCAGAAGGTCACCGTGATCGTTCCCCCCAGGACGGTCATCGTCGTCCACGACGTCGACGCCATCTCCCAATCCCAAATCGTCAAGGCGCTGAATCAGGCAAGGTTGGAGGCGTCGGTTCGGGCTTATGGGAACGGCAGTGAGAAGATCACCAACAAATGGCCGAGCCCGTATGTTCTCCTCTGCGGACTTCTTCTGGTCGTGTCGCTGTTCGAGCATTTCTGGCACCCGCTCAAGTGGTTCGCGCTGGTGGCTGCGGCCGCCGGCTTGCCGCCGATCGTGCTGAGGAGCATTGCGGCCATCCGGAGACTCACCCTGGATGTCAACATACTCATGCTGATTGCTGGTAAGAACAGCCTATAATTCACCTGTGACATTAATGATGTTTCCTGTTATTGGTACCTTGAAAAAAAAAGAAGCTCCCTTTTGTTGGAGGATGGCCCTGACCATCACCTCCGACGATCGAAGACCCTTTGATCTTTAGGAGATAACTGAATTATAAAATTTTAAATAGGCTTCCTTCATCTGGTGGCCTAATGCATGCATTTTGGCTTGTACCAAAACCTACTTTCTCTCTTTAATGAAATGAAAAGCAGAGGTCCCACCATACTTTTTGAAAAGAAATGAACGTTTAAATAGTATCGAATGGTAGCAAACACATCTGCCATTAAGGATATCCTCCAATTGAATAGTCTCATTTGAAATAAGAAAACAAATTATTGACACAGCTTAGTAGTAGAGCATTGAGTTTTAACGTTGATGCCATGGGTTTGAAGCTTTTTTTTTCTGTATTAAAAGGGCAACAGTATACTTGTTCCTTTTTTTTACCATAGTATTCTCTTGTGTGTAGAAGACACAAATACAACACCACTTTGGGTAAATATTCAACTACGGATTGAAGTTGTGGGTATTATTGATACCTGTTCTACCAGTGTGACAATGGGTTGTGAAAAAAAAAGAGACAAAAGCAAGTTTCTTCACGAGGACCAATATGGTGGGTGATTAGTGGGAGAGCAGAAGCAGAAATCCATCTCTCAAAAGTTTATGTCTCACTTGCATAAACTTTTGCTTTCTTTTCTTTTCTAGAGGGTCCCTCACTTTCCATCACATCAAAAGGATATGTTGCTGTGATGCTAATATACGTGCTAGATGAACAATTCTGCTTCTTTTCCTCCATGTGGCGATGTCACCTCAGATAGGGCATCAGATTCCTTTTAGAACAAGCAACATATTTCTTATCAAGAAGCTACACATATTTCGAATAATTCTTTCTAGACTAATATCGTGGCATTGAGATAGCTCTATTGTGATATGCATATGGGAATATGGGATACATGAAAGAATCATCAAAAGAAACAAGAAATACCTTGTTTCAAAAAGAAAAAAAGATTTGG]
[+] EMBL AU225871 [ gccgcTGGGTATTATTGATACCTGTTCTACCAGTGTGACAATGGGTTGTGAAAAAAAAAGAGACAAAAGCAAGTTTCTTCACGAGGACCAA ]
consensusID : consensus_7554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence
[AGAGACGAGACAAGGGGACCACTTACCCATGTCAGAAAATAAGTGCAAAATTTCATACTCCAACTCTACTAAATGGGATGTTTGCTAGCGACAAGTGAACCGTCTTGGCAGTGGTCGCTATTGTTCATGACGCAGGGAGCAATTACTGATACGATTGGACATATCTCTTGACTCGTTAATTCTGACCTCAGCACCCCCGAAATCCTGCTAATTTTGCAGTTTCTGTCACGAGAATTAAGGAACTTGATTACTGTACAATACTGTCACACTCAATGAAACCGCCAGTTTTTCATCTTTGGTTCTTGAAACAGTCATTACATAATTTTAGATAAATGTTACTGTCCTTGAGGAGGTATACCAATTATGACAGATGGACAGTAAAATCAATCACGATTTTAGCATGACAAAACTCTTGAAAGCTTGATTTGATTATGATATTTGCTGTTTTCAGTCAAGGCGCTGAATCAGGCAAGGTAGGAGGCGTCGGTTCGGGCTTATGGGAACGGCAGTGAGAAGATCACCAACAAATGGCCGAGCCCGTATGTTCTCCTCTGCGGACTTCTTCTGGTCGTGTCGCTGTTCGAGCATTTCTGGCACCCGCTCAAGTGGTTCGCG]
[-] EMBL CA762328 [AGAGACGAGACAAGGGGACCACTTACCCATGTCAGAAAATAAGTGCAAAATTTCATACTCCAACTCTACTAAATGGGATGTTTGCTAGCGACAAGTGAACCGTCTTGGCAGTGGTCGCTATTGTTCATGACGCAGGGAGCAATTACTGATACGATTGGACATATCTCTTGACTCGTTAATTCTGACCTCAGCACCCCCGAAATCCTGCTAATTTTGCAGTTTCTGTCACGAGAATTAAGGAACTTGATTACTGTACAATACTGTCACACTCAATGAAACCGCCAGTTTTTCATCTTTGGTTCTTGAAACAGTCATTACATAATTTTAGATAAATGTTACTGTCCTTGAGGAGGTATACCAATTATGACAGATGGACAGTAAAATCAATCACGATTTTAGCATGACAAAACTCTTGAAAGCTTGATTTGATTATGATATTTGCTGTTTTCAGTCAAGGCGCTGAATCAGGCAAGGTAGGAGGCGTCGGTTCGGGCTTATGGGAACGGCAGTGAGAAGATCACCAACAAATGGCCGAGCCCGTATGTTCTCCTCTGCGGACTTCTTCTGGTCGTGTCGCTGTTCGAGCATTTCTGGCACCCGCTCAAGTGGTTCGCG]
[+] EMBL CA766952 [ CCATGTCAGAAAATAAGTGCAAAATTTCATACTCCAACTCTACTAAATGGGATGTTTGCTAGCGACAAGTGAACCGTCTTGGCAGTGGTCGCTATTGTTCATGACGCAGGGAGCAATTACTGATACGATTGGACATATCTCTTGACTCGTTAATTCTGACCTCAGCACCCCCGAAATCCTGCTAATTTTGCAGTTTCTGTCACGAGAATTAAGGAACTTGATTACTGTACAATACTGTCACACTCAATGAAACCGCCAGTTTTTCATCTTTGGTTCTTGAAACAGTCATTACATAATTTTAGATAAATGTTACTGTCCTTGAGGAGGTATACCAATTATGACAGATGGACAGTAAAATCAATCACGATTTTAGCATGACAAAACTCTTGAAAGCTTGATTTGATTTTGATATTTGCTGTTTTCAGTCAAGGCGCTGAATCAGGCAAGGTTGGAGGCGTCGGTTCGGGCTTATGGGAACGGCAGTGAGAAGATCACCAACAAATGGCCGAGCCCGTATGTTCTCCTCTGCGGACTTCTTCTGGTCGTGTCGCTGTTCGAGCATTTCTGGCACCCGCTCAAGTGGTTCGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7554#0 ----------------------------AT-TCGCACAACCAATCTCTTCTTGCTTCCTC 31
consensus_7554#1 AGAGACGAGACAAGGGGACCACTTACCCATGTCAGAAAATAAGTGCAAAATTTCATACTC 60
** ** * ** * * ** * * ***
consensus_7554#0 CTCCTCCTCCTCCAGCCGCCGCCGCCGACGACGATTC--TTGGTAGAGAGATTCTTGC-G 88
consensus_7554#1 CAACTCTACTAAATGGGATGTTTGCTAGCGACAAGTGAACCGTCTTGGCAGTGGTCGCTA 120
* *** * * ** **** * * * * * * **
consensus_7554#0 TTGTTTTACCTGCGTCTTGTTCTTCTTGGGA--GTTGGGTGGATCGATTGA-TCGAGGTT 145
consensus_7554#1 TTGTTCATGACGCAGGGAGCAATTACTGATACGATTGGACATATCTCTTGACTCGTTAAT 180
***** ** * ** ** * **** *** **** *** *
consensus_7554#0 TTGGAGGTTGGAAGAAGTGTGTGTTGTGGTGGGGGGTTTGTAGAGAGAGAGAGGGCAAAG 205
consensus_7554#1 TCTGACCTCAGCACCCCCG-AAATCCTGCTAATTTTGCAGTTTCTGTCACGAGAATTAAG 239
* ** * * * * * ** * ** *** ***
consensus_7554#0 GCACGCAAAGAGGGAGAGAGTGAGGAGAGATGGCGGCGGAGGGAGGGAGGTGTCAGAAGA 265
consensus_7554#1 GAACTTGATTACTGT-ACAATACTGTCACACT-CAATGAAACCGCCAGTTTTTCATCTTT 297
* ** * * * * * * * * * * * * * ***
consensus_7554#0 GCTACTTCGACGTGCTGGGGATTTGCTGCCCGTCGGAGGTTCCCCTCGTCGAGAAGCTTC 325
consensus_7554#1 GGTTCTT-GAAACAGTCATTACATAATTTTAGATAAATGTTACTGTCCTTGAGGAGGTAT 356
* * *** ** * * * * * * *** * ** * *** ** *
consensus_7554#0 TGCAGCCGCTGGAGGGCGTCCAGAAGGTCA-CCGTGATCGTTCCCCCCAGGACGGTCATC 384
consensus_7554#1 ACCAATTATGACAGATGGACAGTAAAATCAATCACGATT-TTAGCATGACAAAACTCTTG 415
** ** * * ** *** * *** ** * * * ** *
consensus_7554#0 GTCGTCCACGACGTCGACGCCATCTCCCAATCCCAAATCGTCAAGGCGCTGAATCAGGCA 444
consensus_7554#1 AAAGCTTGATTTGATTATGATATTTGCTGTTTTCA----GTCAAGGCGCTGAATCAGGCA 471
* * * * ** * * * ** *********************
consensus_7554#0 AGGTTGGAGGCGTCGGTTCGGGCTTATGGGAACGGCAGTGAGAAGATCACCAACAAATGG 504
consensus_7554#1 AGGTAGGAGGCGTCGGTTCGGGCTTATGGGAACGGCAGTGAGAAGATCACCAACAAATGG 531
**** *******************************************************
consensus_7554#0 CCGAGCCCGTATGTTCTCCTCTGCGGACTTCTTCTGGTCGTGTCGCTGTTCGAGCATTTC 564
consensus_7554#1 CCGAGCCCGTATGTTCTCCTCTGCGGACTTCTTCTGGTCGTGTCGCTGTTCGAGCATTTC 591
************************************************************
consensus_7554#0 TGGCACCCGCTCAAGTGGTTCGCGCTGGTGGCTGCGGCCGCCGGCTTGCCGCCGATCGTG 624
consensus_7554#1 TGGCACCCGCTCAAGTGGTTCGCG------------------------------------ 615
************************
consensus_7554#0 CTGAGGAGCATTGCGGCCATCCGGAGACTCACCCTGGATGTCAACATACTCATGCTGATT 684
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 GCTGGTAAGAACAGCCTATAATTCACCTGTGACATTAATGATGTTTCCTGTTATTGGTAC 744
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 CTTGAAAAAAAAAGAAGCTCCCTTTTGTTGGAGGATGGCCCTGACCATCACCTCCGACGA 804
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 TCGAAGACCCTTTGATCTTTAGGAGATAACTGAATTATAAAATTTTAAATAGGCTTCCTT 864
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 CATCTGGTGGCCTAATGCATGCATTTTGGCTTGTACCAAAACCTACTTTCTCTCTTTAAT 924
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 GAAATGAAAAGCAGAGGTCCCACCATACTTTTTGAAAAGAAATGAACGTTTAAATAGTAT 984
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 CGAATGGTAGCAAACACATCTGCCATTAAGGATATCCTCCAATTGAATAGTCTCATTTGA 1044
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 AATAAGAAAACAAATTATTGACACAGCTTAGTAGTAGAGCATTGAGTTTTAACGTTGATG 1104
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 CCATGGGTTTGAAGCTTTTTTTTTCTGTATTAAAAGGGCAACAGTATACTTGTTCCTTTT 1164
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 TTTTACCATAGTATTCTCTTGTGTGTAGAAGACACAAATACAACACCACTTTGGGTAAAT 1224
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 ATTCAACTACGGATTGAAGTTGTGGGTATTATTGATACCTGTTCTACCAGTGTGACAATG 1284
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 GGTTGTGAAAAAAAAAGAGACAAAAGCAAGTTTCTTCACGAGGACCAATATGGTGGGTGA 1344
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 TTAGTGGGAGAGCAGAAGCAGAAATCCATCTCTCAAAAGTTTATGTCTCACTTGCATAAA 1404
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 CTTTTGCTTTCTTTTCTTTTCTAGAGGGTCCCTCACTTTCCATCACATCAAAAGGATATG 1464
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 TTGCTGTGATGCTAATATACGTGCTAGATGAACAATTCTGCTTCTTTTCCTCCATGTGGC 1524
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 GATGTCACCTCAGATAGGGCATCAGATTCCTTTTAGAACAAGCAACATATTTCTTATCAA 1584
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 GAAGCTACACATATTTCGAATAATTCTTTCTAGACTAATATCGTGGCATTGAGATAGCTC 1644
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 TATTGTGATATGCATATGGGAATATGGGATACATGAAAGAATCATCAAAAGAAACAAGAA 1704
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 ATACCTTGTTTCAAAAAGAAAAAAAGATTTGG 1736
consensus_7554#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||