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Oryza sativa
cluster # 7569 cluster # 7569       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7569#0 length = 1365 sequences # 4  

consensusID : consensus_7569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1365
fasta sequence
                              [ACTCACCCACTTGTCTCACACTCTCACTGAGCTCCTCTGCTTCTCGCATCCATGGCCGCCGCCGCCACGGGCCCTGTCCCCTTCAAGGACGCCGACGACGACGGCACGCTCGCCGCCGCCGAGGCGCGCTCGCCTCTCCCGAAGGAGGAGTTCGGCGACCTCGTCGCGGCGCTGCCGCGGAAGGAGCAGTACCTCGACGGGCGGCTCTACGAGGGGTTCTGGCTGCCGGAGCACTACGCGCCGGGGATCATCGCGTTCCGCCGCCGCTTCACGCCGCGCGCCGACGACGTGGTCCTTGCCAGCTACCCCAAGTGCGGCACCACGTGGCTCAAGGCGCTGGCCTTCGCCGCCATGACCCGCGCCGCCTACCCGGCGGACGAACACCCGCTGCTCCGCCTCAACCCGCACGACGTCATCCCGTTCGTCGAGGACGTCTTCACCGACGGCCACGAGGCCAAGCTCGACATGCTCCCCTCGCCGCGCCTCATCAACACGCACACGCCGTACCAGCTTCTCCCGGAGTCGGTCGTCGCCGGCGACGGCGGCGGCGGATGCAAGGTCGTCTACATCTGCAGGGACCCCAAGGACATGGTCGTGTCGCTGTACCACTTCATGCGGCGCCTCCAGCCCGACCTGTCGCTCGCCGGCGTGGTGGAGTCCGTCGCCGACGGCACGGTGCCGTTCGGGCCGATGTGGGACCACATCCTCGGCTACTGGCGGGCGAGCGTCTCCCGCCCGGACCGGGTGCTCTTACTCAGGTACGAGGACCTGCTCCGCGACGGCGCCGCCGGCGAGCACGTCAGGGCGATGGCGAGGTTCATGGGGCGGCCGTTCTCGGCCGCCGAGGAGGCCGCCGGCGCCGTAGCGAGCGTCGTGGAGTTGTGCAGCTTCGAGAGGATGAAGGCGCTGGAGGTGAACCGGCGGGGCACGGCGGGGTCGTACAAGAGCATGCCGCGCGACGCCTTCTTCAGGAAGGGCGTCGCCGGCGACTGGGCGAACCACATGTCGCCGGAGACGGCAGCGAGGCTGGACGGCATCTTCCGCGAAAAATTCCGTGGCACAGGGCTCACCATTGTTCCATGACACGGATCGAGCAGTTGGCCAGCGACGTCGTCGTCAGTCACTGACATGTGGGCCATAGCAAAGTGGAACCCACATGTCAATGACCCAACTGCATGTCAGAGGATCTGCTTCCGTGTGCTTCATTTCATTGTGATTTTGCTGCTGTTTCGGACATTTTTGTTTGGCATCGCTTGTTTTTATTTGTGATTACCCACTTTTCTCGGTTCCAATCATGGAACGGAGATGTGACGAAAGGCGCATCGAATAAAGAAATGAGAGTGATTCGGGCTTGAAAAAAAAAAA]

[+] EMBL AK105239             [ACTCACCCACTTGTCTCACACTCTCACTGAGCTCCTCTGCTTCTCGCATCCATGGCCGCCGCCGCCACGGGCCCTGTCCCCTTCAAGGACGCCGACGACGACGGCACGCTCGCCGCCGCCGAGGCGCGCTCGCCTCTCCCGAAGGAGGAGTTCGGCGACCTCGTCGCGGCGCTGCCGCGGAAGGAGCAGTACCTCGACGGGCGGCTCTACGAGGGGTTCTGGCTGCCGGAGCACTACGCGCCGGGGATCATCGCGTTCCGCCGCCGCTTCACGCCGCGCGCCGACGACGTGGTCCTTGCCAGCTACCCCAAGTGCGGCACCACGTGGCTCAAGGCGCTGGCCTTCGCCGCCATGACCCGCGCCGCCTACCCGGCGGACGAACACCCGCTGCTCCGCCTCAACCCGCACGACGTCATCCCGTTCGTCGAGGACGTCTTCACCGACGGCCACGAGGCCAAGCTCGACATGCTCCCCTCGCCGCGCCTCATCAACACGCACACGCCGTACCAGCTTCTCCCGGAGTCGGTCGTCGCCGGCGACGGCGGCGGCGGATGCAAGGTCGTCTACATCTGCAGGGACCCCAAGGACATGGTCGTGTCGCTGTACCACTTCATGCGGCGCCTCCAGCCCGACCTGTCGCTCGCCGGCGTGGTGGAGTCCGTCGCCGACGGCACGGTGCCGTTCGGGCCGATGTGGGACCACATCCTCGGCTACTGGCGGGCGAGCGTCTCCCGCCCGGACCGGGTGCTCTTACTCAGGTACGAGGACCTGCTCCGCGACGGCGCCGCCGGCGAGCACGTCAGGGCGATGGCGAGGTTCATGGGGCGGCCGTTCTCGGCCGCCGAGGAGGCCGCCGGCGCCGTAGCGAGCGTCGTGGAGTTGTGCAGCTTCGAGAGGATGAAGGCGCTGGAGGTGAACCGGCGGGGCACGGCGGGGTCGTACAAGAGCATGCCGCGCGACGCCTTCTTCAGGAAGGGCGTCGCCGGCGACTGGGCGAACCACATGTCGCCGGAGACGGCAGCGAGGCTGGACGGCATCTTCCGCGAAAAATTCCGTGGCACAGGGCTCACCATTGTTCCATGACACGGATCGAGCAGTTGGCCAGCGACGTCGTCGTCAGTCACTGACATGTGGGCCATAGCAAAGTGGAACCCACATGTCAATGACCCAACTGCATGTCAGAGGATCTGCTTCCGTGTGCTTCTTTTCATTGTGATTTTGCTGCTGTTTCGGACATTTTTGTTTGGCATCGCTTGTTTTTATTTGTGATTACCCACTTTTCTCGGTTCCAATCATGGAACGGAGATGTGACGAAAGGCGCATCGAATAAAGAAATGAGAGTGATTCGGG               ]
[+] EMBL C27206               [                             AGCTCCTCTGCTTCTCGCATCCATGGCCGCCGACGCCACGGGCCCTGTCCCCTTCAAGGACGCCGACGACGACGGCACGCTCGCCGNCGCCGAGG GCGCTCGCCTCTCCCGAA GAGGAGTTCGGCGACCTCGTCG GGCGCTGCCG GATAGGAGCAGTACCTCGACGGGCGGCTCTACGAGGGGTTCTGGCTGCCGGAGCACTACGCGNCGGGGATCATCGCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU108819             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACGGCAGCGAGGCTGGACGGNATCTTCCGCGAAAAATTCCGTGGCACAGGGCTCACCATTGTTCCATGACNCGGATCGAGCAGTTGGCCAGCGACGTCGTCGTCNGTCACTGACATGTGGGCCATAGCAAAGTGGAACCCACATGTCAATGNCCCAACTGCATGTCAGAGGATCTGCTTCCGTGTGCTTCATTTCATTGTGATTTTGCTGCTGTTTCGGACATTTTTGTTTGGCATCGCTTGTTTTTATTTGTGATTACCCACTTTTCTCGGTTCCAATCATGGAACGGAGATGTGACGAAAGGCGCATCGAATAAAGAAATGAGAGTGATTCGGGCTTGAAAAAA     ]
[+] EMBL AU085692             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATGACACGGATCGAGCAGTTGGCCAGCGACGTCGTCGTNAGTCACTGACATGTGGGCCATAGCAAAGTGGAACCCACATGTCAATGACCCAACTGCATGTCAGAGGATCTGCTTCCGTGTGCTTCATTTCATTGTGATTTTGCTGCTGTTTCGGACATTTTTGTTTGGCATCGCTTGTTTTTATTTGTGATTACCCACTTTTCTCGGTTCCAATCATGGAACGGAGATGTGACGAAAGGCGCATCGAATAAAGAAATGAGAGTGATTCGGGNTTAAAAAAAAAAAA]


>consensus_7569#0 ACTCACCCACTTGTCTCACACTCTCACTGAGCTCCTCTGCTTCTCGCATCCATGGCCGCC GCCGCCACGGGCCCTGTCCCCTTCAAGGACGCCGACGACGACGGCACGCTCGCCGCCGCC GAGGCGCGCTCGCCTCTCCCGAAGGAGGAGTTCGGCGACCTCGTCGCGGCGCTGCCGCGG AAGGAGCAGTACCTCGACGGGCGGCTCTACGAGGGGTTCTGGCTGCCGGAGCACTACGCG CCGGGGATCATCGCGTTCCGCCGCCGCTTCACGCCGCGCGCCGACGACGTGGTCCTTGCC AGCTACCCCAAGTGCGGCACCACGTGGCTCAAGGCGCTGGCCTTCGCCGCCATGACCCGC GCCGCCTACCCGGCGGACGAACACCCGCTGCTCCGCCTCAACCCGCACGACGTCATCCCG TTCGTCGAGGACGTCTTCACCGACGGCCACGAGGCCAAGCTCGACATGCTCCCCTCGCCG CGCCTCATCAACACGCACACGCCGTACCAGCTTCTCCCGGAGTCGGTCGTCGCCGGCGAC GGCGGCGGCGGATGCAAGGTCGTCTACATCTGCAGGGACCCCAAGGACATGGTCGTGTCG CTGTACCACTTCATGCGGCGCCTCCAGCCCGACCTGTCGCTCGCCGGCGTGGTGGAGTCC GTCGCCGACGGCACGGTGCCGTTCGGGCCGATGTGGGACCACATCCTCGGCTACTGGCGG GCGAGCGTCTCCCGCCCGGACCGGGTGCTCTTACTCAGGTACGAGGACCTGCTCCGCGAC GGCGCCGCCGGCGAGCACGTCAGGGCGATGGCGAGGTTCATGGGGCGGCCGTTCTCGGCC GCCGAGGAGGCCGCCGGCGCCGTAGCGAGCGTCGTGGAGTTGTGCAGCTTCGAGAGGATG AAGGCGCTGGAGGTGAACCGGCGGGGCACGGCGGGGTCGTACAAGAGCATGCCGCGCGAC GCCTTCTTCAGGAAGGGCGTCGCCGGCGACTGGGCGAACCACATGTCGCCGGAGACGGCA GCGAGGCTGGACGGCATCTTCCGCGAAAAATTCCGTGGCACAGGGCTCACCATTGTTCCA TGACACGGATCGAGCAGTTGGCCAGCGACGTCGTCGTCAGTCACTGACATGTGGGCCATA GCAAAGTGGAACCCACATGTCAATGACCCAACTGCATGTCAGAGGATCTGCTTCCGTGTG CTTCATTTCATTGTGATTTTGCTGCTGTTTCGGACATTTTTGTTTGGCATCGCTTGTTTT TATTTGTGATTACCCACTTTTCTCGGTTCCAATCATGGAACGGAGATGTGACGAAAGGCG CATCGAATAAAGAAATGAGAGTGATTCGGGCTTGAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)