These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1490 fasta sequence [TCGGCGAGGACCACAAGGACCTCCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCCATCCAGCAGCGCGTCATCCTCTCCCACCTCCGGCGGTGGCTCGACCGGAGCGCCGCCAACGGCGGCAAGGCCGAGCCGATTCGGGTGCCCTGCCGCGACATGAATCTCGAGACCTCGCAGACGGTGTTCGCGGGGCCGTACCTCACCAAGGAGGCGAGGGAGAAGTTCGAGAGGGACTACAATTTCTTCAATGTCGGCCTCATGGCCCTCCCCGTTGACCTGCCGGGGTTCGCATTCCGGAGCGCGAGGCTGGGCGTGGCGCGGCTGGTGCGCACGCTCGGCGAGTGCGCGCGGGCGAGCAAGGCGCGGATGCGCGCCGGCGGCGAACCAGAGTGCCTCGTCGACTTCTGGATGCAGGAGACGGTGCGGGAGATCGACGAGGCCAAGGCAGCGGGGAAGCCGCCTCCGGCGCACACCGACGACGAGGAGCTCGGGGGCTTCCTGTTCGACTTCCTCTTCGCGGCGCAGGACGCGTCCACCTCCTCCCTCTGCTGGGCCGTGTCCGCGCTGGACTCCCACCCGGACGTGCTCGCAGGCGTGCGCGCCGAGGTGGCCTCCCTCTGGTCCCCGGAGTCCGGCGAGCCCATCACCGCCGAGAAGATCGCGGAGATGAAGTACACTCAGGCCGTAGCTCGCGAGGTGGTCCGGCACCGGCCACCGGCGACGCTGGTGCCGCACATCGCCGGCGAGGAGTTCCAGCTGACGGAGTGGTACACGATCCCCAAGGGCACCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCCCCGAGCCGGACACGTTCGACCCGGAGCGCTTCTTCTCGGAGGCACGGAGGGAGGACGTGGTGTACAAGCGCAACTTCCTCGCGTTCGGCGCCGGGCCGCACCAGTGCGTCGGGCAGCGGTACGCGCTCAACCACCTCGTCCTATTCATGGCGCTCTTCGTCTCCGTCGTGGACTTCCGGCGAGACCGGACGGAGGGCTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCGAGGGACAGCTGCACCGTGTACCTCAAGCAGCGATGCGCCAAGTTCCCATCTTTCTGAGCTGGTTTCCCTTGTCCTCTTGCTCTGCTCCTCTTCCCGTGCATCGCATAATTTTTCTTCTTCTCCATTTTTCTTTTCAATCTGGTGGATCGTGTCGCAGCTGTGATGCATTGTTGATTTGTAGGTTTTGATGTTTGGTCCATTCAATTATTTTTGTTGGTAATTGGGTTCAGTTGGGGTTTGGACTCAGCTTTGGGTCCCAGCCGGCTAGGGGATGATACGAACACTACATCTGGGGTTGTTGGCCACATGTGTGGGTCTTCTGGTTTGGTTGGTTGGCATGTCTCAGGAAATTGGTGGTATTTGGAATGGATTTGCTCGATTGTTTTGGCAACTAAAATGTGAGCA] [+] EMBL AK060710 [TCGGCGAGGACCACAAGGACCTCCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCCATCCAGCAGCGCGTCATCCTCTCCCACCTCCGGCGGTGGCTCGACCGGAGCGCCGCCAACGGCGGCAAGGCCGAGCCGATTCGGGTGCCCTGCCGCGACATGAATCTCGAGACCTCGCAGACGGTGTTCGCGGGGCCGTACCTCACCAAGGAGGCGAGGGAGAAGTTCGAGAGGGACTACAATTTCTTCAATGTCGGCCTCATGGCCCTCCCCGTTGACCTGCCGGGGTTCGCATTCCGGAGCGCGAGGCTGGGCGTGGCGCGGCTGGTGCGCACGCTCGGCGAGTGCGCGCGGGCGAGCAAGGCGCGGATGCGCGCCGGCGGCGAACCAGAGTGCCTCGTCGACTTCTGGATGCAGGAGACGGTGCGGGAGATCGACGAGGCCAAGGCAGCGGGGAAGCCGCCTCCGGCGCACACCGACGACGAGGAGCTCGGGGGCTTCCTGTTCGACTTCCTCTTCGCGGCGCAGGACGCGTCCACCTCCTCCCTCTGCTGGGCCGTGTCCGCGCTGGACTCCCACCCGGACGTGCTCGCAGGCGTGCGCGCCGAGGTGGCCTCCCTCTGGTCCCCGGAGTCCGGCGAGCCCATCACCGCCGAGAAGATCGCGGAGATGAAGTACACTCAGGCCGTAGCTCGCGAGGTGGTCCGGCACCGGCCACCGGCGACGCTGGTGCCGCACATCGCCGGCGAGGAGTTCCAGCTGACGGAGTGGTACACGATCCCCAAGGGCACCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCCCCGAGCCGGACACGTTCGACCCGGAGCGCTTCTTCTCGGAGGCACGGAGGGAGGACGTGGTGTACAAGCGCAACTTCCTCGCGTTCGGCGCCGGGCCGCACCAGTGCGTCGGGCAGCGGTACGCGCTCAACCACCTCGTCCTATTCATGGCGCTCTTCGTCTCCGTCGTGGACTTCCGGCGAGACCGGACGGAGGGCTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCGAGGGACAGCTGCACCGTGTACCTCAAGCAGCGATGCGCCAAGTTCCCATCTTTCTGAGCTGGTTTCCCTTGTCCTCTTGCTCTGCTCCTCTTCCCGTGCATCGCATAATTTTTCTTCTTCTCCATTTTTCTTTTCAATCTGGTGGATCGTGTCGCAGCTGTGATGCATTGTTGATTTGTAGGTTTTGATGTTTGGTCCATTCAATTATTTTTGTTGGTAATTGGGTTCAGTTGGGGTTTGGACTCAGCTTTGGGTCCCAGCCGGCTAGGGGATGATACGAACACTACATCTGGGGTTGTTGGCCACATGTGTGGGTCTTCTGGTTTGGTTGGTTGGCATGTCTCAGGAAATTGGTGGTATTTGGAATGGATTTGCTCGATTGTTTTGGCAACTAAAATGTGAGCA] consensusID : consensus_757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1016 fasta sequence [AACTGTCTGAGCAGGAGCTCGAGAGCCTTCAGCACCCCACGCACTATGAGAACCAGCACTGACCCGTCCGGCTCAATCGAGTCGTTTCACGGCCTCGTACACCTCCGCACGGCGGCGCCATTGCTGGCTGCAGCTGTGGCGTTATACATGCTCATAGAGCAGCTGTCATACCACCGCAAGAAGGGGTCCATGCCAGGGGCGCCGCTCGTCGTGCCGTTCCTCGGTAGCGCCGCGCATTTGATCCGCGACCCGGTCGGATTCTGGGACGTGCAAGCGGCGCTCGCTCGCAAGTCCGGCGCTGGGCTCGCCGCGGACTTTCTCTTCGGCCGGTTCACGGTCTTCATCCGTGACTCGGAGCTGTCCCACCGCGTGTTCGCCAACGTCCGCGCCGACGCCTTCCACGTCGTCAGCCACCCGTTCGGCAAGAAGCTCTTCGGCGAACACAACCTCGTCTACCTGGTCGGCGAGGAGCACAAGGACCTGCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACTTATGCCGTCATCCAGCAGCGTGTCATCATCTCCCACCTCCGGCGGTGGCTCGACCGGAGTGCTTCCAACGGCGGCAAGGCCGAGCCGATACGGGTGCCCTGCCGCGACATGAACCTGGAGACCTCGCAGACGGTGTTCGTGGGGCCGTACCTCACCGAGAAGGCGAGGGAGAGGTTCGACAGGGATTACAACCTCTTCAACGTCGGTTTCATAACCTTGCCCGTGGACCTTCCGGGGTTCGCGTTCCGCCGGGCGAGGCTAGCCGGGGCACGGCTGATGCACACTCTCGGGGACTGCGCACGTCAGAGCAGGCAACGCATGCTTGGCGGCGGCGAGCCAGAGTGCCTCCTGGACTACTTGATGCAGGAAACGGTGCGTGAGATCGACGAGGCCACGGCAGCGGGGCTGCCGCCACCACCGCACACCAGCGACGTGGAGGTCGGCGCCCTCCTGTTCGGCTTCCTCTTCGCGGCGCAGGACGCGTCCAC] [+] EMBL AK071150 [AACTGTCTGAGCAGGAGCTCGAGAGCCTTCAGCACCCCACGCACTATGAGAACCAGCACTGACCCGTCCGGCTCAATCGAGTCGTTTCACGGCCTCGTACACCTCCGCACGGCGGCGCCATTGCTGGCTGCAGCTGTGGCGTTATACATGCTCATAGAGCAGCTGTCATACCACCGCAAGAAGGGGTCCATGCCAGGGGCGCCGCTCGTCGTGCCGTTCCTCGGTAGCGCCGCGCATTTGATCCGCGACCCGGTCGGATTCTGGGACGTGCAAGCGGCGCTCGCTCGCAAGTCCGGCGCTGGGCTCGCCGCGGACTTTCTCTTCGGCCGGTTCACGGTCTTCATCCGTGACTCGGAGCTGTCCCACCGCGTGTTCGCCAACGTCCGCGCCGACGCCTTCCACGTCGTCAGCCACCCGTTCGGCAAGAAGCTCTTCGGCGAACACAACCTCGTCTACCTGGTCGGCGAGGAGCACAAGGACCTGCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACTTATGCCGTCATCCAGCAGCGTGTCATCATCTCCCACCTCCGGCGGTGGCTCGACCGGAGTGCTTCCAACGGCGGCAAGGCCGAGCCGATACGGGTGCCCTGCCGCGACATGAACCTGGAGACCTCGCAGACGGTGTTCGTGGGGCCGTACCTCACCGAGAAGGCGAGGGAGAGGTTCGACAGGGATTACAACCTCTTCAACGTCGGTTTCATAACCTTGCCCGTGGACCTTCCGGGGTTCGCGTTCCGCCGGGCGAGGCTAGCCGGGGCACGGCTGATGCACACTCTCGGGGACTGCGCACGTCAGAGCAGGCAACGCATGCTTGGCGGCGGCGAGCCAGAGTGCCTCCTGGACTACTTGATGCAGGAAACGGTGCGTGAGATCGACGAGGCCACGGCAGCGGGGCTGCCGCCACCACCGCACACCAGCGACGTGGAGGTCGGCGCCCTCCTGTTCGGCTTCCTCTTCGCGGCGCAGGACGCGTCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_757#0 TCGGCGAGGACCACAAGGACCTCCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGC 60 consensus_757#1 ------------------------------------------------------------ consensus_757#0 TCTCCACCTACGCCGCCATCCAGCAGCGCGTCATCCTCTCCCACCTCCGGCGGTGGCTCG 120 consensus_757#1 ---------AACTGTCTGAGCAGGAGCTCGAGAGCCTTCAGCACCCCACGCACTATGAGA 51 * * *** *** ** * *** **** * ** * consensus_757#0 ACCGGAGCGCCGCCAACGGCGGCAAGGCCGAGCCGATTCGGGTGCCCTGCCGCGACATGA 180 consensus_757#1 ACC--AGCACTGACCCGTCCGGCTCAATCGAGTCGTTTCACGGCCTCGTACACCTCCGCA 109 *** *** * * * **** **** ** *** * * * * * * * consensus_757#0 ATCTCGAGACCTCGCAGACGGTGTTCGCGGGGCCGTAC---CTCACCAAGGAGGCGAGGG 237 consensus_757#1 CGGCGGCGCCATTGCTGGCTGCAGCTGTGGCGTTATACATGCTCATAGAGCAGCTGTCAT 169 * * * * ** * * * * ** * *** **** ** ** * consensus_757#0 AGAAGTTCGAGAGGGACTACAATTTCTTCAATGTCGGCC-TCATGGCCCTCCCCGTTGAC 296 consensus_757#1 ACCACCGCAAGAAGGGGTCCA-TGCCAGGGGCGCCGCTCGTCGTGCCGTTCCTCGGTAGC 228 * * * *** ** * ** * * * ** * ** ** * *** ** * * consensus_757#0 CTGCCGGGGTTCGCATTCCGGAGCGCGAGGCTGGGCGTGGCGCGGCTGGTGCGCACGCTC 356 consensus_757#1 --GCCGCGCATTTGATCCGCGACCCGGTCGGATTCTGGGACGTGCAAGCGGCGCTCGCTC 286 **** * * ** * ** * * * * * ** * * **** ***** consensus_757#0 GGCGAGTGCGCGCGGGCGAGCAAGGCGCGGATGCGCGCCGGCGGCGAACCAGAGTGCCTC 416 consensus_757#1 G-CAAGTCCG-GCGC-TGGGCTCGCCGCGGACTTTCTCTTCGGCCGGTTCACGGT-CTTC 342 * * *** ** *** * ** * ****** * * * ** ** ** * ** consensus_757#0 GTCGACTTCTGGATGCAGGAGACGGTGCGGGAGATCGACGAGG-CCAAGGCAGCGGGGAA 475 consensus_757#1 ATCCGTGACTCGGAGCTGT---CCCACCGCGTGTTCGCCAACGTCCGCGCCGACGCCTTC 399 ** ** * ** * * ** * * *** * * * ** * * ** consensus_757#0 GCCGCCTCCGGCGCACACCGACGACGAGGAGCTCGGGGGCTTCCTGTTCGACTTCCTCTT 535 consensus_757#1 CACGTCGTCAGC-CACCCGTTCGGCAAGAAGCTCTTCGGCGAAC---ACAACCTCGTCTA 455 ** * * ** *** * ** * ** ***** *** * * ** ** *** consensus_757#0 CGCGGCGCAGGACGCGTCCACCTCCTCCCTCTGCTGGGCCGTGTCCGCGCTGGACTCCCA 595 consensus_757#1 CCTGGTCGGCGAGGAGCACAAGGACCTGCGCCGCCGGATCGCGCCCAACTTCACGCCGCG 515 * ** ** * * ** * * * ** ** ** * ** * * * consensus_757#0 CCCGGACGTGCTCGCAGGCGT-GCGCGCCGAGGTGGCCTC-CCTCTGGTCCCCGGAGTCC 653 consensus_757#1 CGCGCTCTCCACTTATGCCGTCATCCAGCAGCGTGTCATCATCTCCCACCTCCGGCGGTG 575 * ** * * *** * * *** * ** *** * **** * consensus_757#0 GGCGAGCCCATCACCGCCGAGAAGATCGCGGAGATGAAGTACACTCAGGCCGTAGCTCGC 713 consensus_757#1 GCTCGACCGG--AGTGCTTCCAACGGCGGCAAGGCCGAGCCGATACGGGTGCCCTGCCGC 633 * ** * ** ** ** ** ** * * ** *** consensus_757#0 GAGGTGGTCCGGCACCGGCCACCGGCGACGCTGGTG---CCGCACATCGCCGGCGAGGAG 770 consensus_757#1 GACATGAACCTGGAGACCTCGCAGACGGTGTTCGTGGGGCCGTACCTCACCGAGAAGGCG 693 ** ** ** * * * * * ** * * *** *** ** ** *** *** * consensus_757#0 TTCCAGCTGACGGAGTGG---TACACGATCCCCAAGGGCACCATCGTGTTCCCGTCGGTG 827 consensus_757#1 AGGGAGAGGTTCGACAGGGATTACAACCTCTTCAACGTCGGTTTCATAACCTTGCCCGTG 753 ** * ** ** **** ** *** * * ** * * * * *** consensus_757#0 TACGAGTCGTCGTTCCAGGGGTTCCCCGAGCCGGACACGTTCGACC-CGG--AGCGCTTC 884 consensus_757#1 GACCTTCCGGGGTTC--GCGTTCCGCCGGGCGAGGCTAGCCGGGGCACGGCTGATGCACA 811 ** ** **** * * * * *** ** * * * * * *** ** consensus_757#0 TTCTCGGAGGC-ACGGAGGG-AGGACGTGGTGTACAAGCGCAACTTCCTCGCGTTCGGCG 942 consensus_757#1 CTCTCGGGGACTGCGCACGTCAGAGCAGGCAACGCATGCTTGGCGGCGGCGAGCCAGAGT 871 ****** * * ** * * ** * * ** ** * * ** * * consensus_757#0 CCGGGCCGCACCAGTGCGT-CGGGCAGCGGTACGCGCTCAACCACCTCGTCCTATTCATG 1001 consensus_757#1 GCCTCCTGGACTACTTGATGCAGGAAACGGTGCGTG--AGATCGACGAGGCCACGGCAGC 929 * * * ** * * * * ** * **** ** * * * * * ** ** consensus_757#0 GCGCTCTTCGTCTCCGTCGTGGACTTCCGGCGAGACCGGACGGAGGGCTGCGACGAGCCG 1061 consensus_757#1 GGGGCTGCCGCCACCACCGCACACCAGCGACG--------TGGAGGTCGGCGCC---CTC 978 * * ** * ** ** ** ** ** ***** * *** * * consensus_757#0 GTGTACATGCCGACCATCGTGCCGAGGGACAGCTGCACCGTGTACCTCAAGCAGCGATGC 1121 consensus_757#1 CTGTTCGGCTTCCTCTTCGCGGCGCAGGACGCGTCCAC---------------------- 1016 *** * * *** * ** **** * *** consensus_757#0 GCCAAGTTCCCATCTTTCTGAGCTGGTTTCCCTTGTCCTCTTGCTCTGCTCCTCTTCCCG 1181 consensus_757#1 ------------------------------------------------------------ consensus_757#0 TGCATCGCATAATTTTTCTTCTTCTCCATTTTTCTTTTCAATCTGGTGGATCGTGTCGCA 1241 consensus_757#1 ------------------------------------------------------------ consensus_757#0 GCTGTGATGCATTGTTGATTTGTAGGTTTTGATGTTTGGTCCATTCAATTATTTTTGTTG 1301 consensus_757#1 ------------------------------------------------------------ consensus_757#0 GTAATTGGGTTCAGTTGGGGTTTGGACTCAGCTTTGGGTCCCAGCCGGCTAGGGGATGAT 1361 consensus_757#1 ------------------------------------------------------------ consensus_757#0 ACGAACACTACATCTGGGGTTGTTGGCCACATGTGTGGGTCTTCTGGTTTGGTTGGTTGG 1421 consensus_757#1 ------------------------------------------------------------ consensus_757#0 CATGTCTCAGGAAATTGGTGGTATTTGGAATGGATTTGCTCGATTGTTTTGGCAACTAAA 1481 consensus_757#1 ------------------------------------------------------------ consensus_757#0 ATGTGAGCA 1490 consensus_757#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||