These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 833 fasta sequence [TGTGGATAAGAGATTCTGAAGCTAGGGTGCTATCCATCTAGCAATCGAGCTTCTTCAGCAAAACTACAAAAGAACACTATGTCGAGCAACGTGGATTCAAAGACATCCAACAAAGCCTCCTATCCTCTTGCATCTTAAGCCATTGAAACAACAGCAGCTCAATCCCAACATATTTACTCTTCTTACCTTCTCCATTGCATATATAATAGACACAGCTAGCTTTGTTGTACCATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCTCAGAGGTTATAATAAGGTTGGGAAACGATTTTTCTAAAAAAAAAAAAAAAA] [+] EMBL AK062143 [TGTGGATAAGAGATTCTGAAGCTAGGGTGCTATCCATCTAGCAATCGAGCTTCTTCAGCAAAACTACAAAAGAACACTATGTCGAGCAACGTGGATTCAAAGACATCCAACAAAGCCTCCTATCCTCTTGCATCTTAAGCCATTGAAACAACAGCAGCTCAATCCCAACATATTTACTCTTCTTACCTTCTCCATTGCATATATAATAGACACAGCTAGCTTTGTTGTACCATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTGGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGAT ] [+] EMBL AK120328 [ AATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTA ] [-] EMBL CF324670 [ AAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCTCAGAGGTTATAATAAGGTTGGGAAACGATTTTTCTAAAAAAAAAAAAAAAA] consensusID : consensus_7576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [GACGAGACAAGGGGGATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATCTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCACA] [+] EMBL CA765702 [GACGAGACAAGGGGGATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATCTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7576#0 TGTGGATAAGAGATTCTGAAGCTAGGGTGCTATCCATCTAGCAATCGAGCTTCTTCAGCA 60 consensus_7576#1 ------------------------------------------------------------ consensus_7576#0 AAACTACAAAAGAACACTATGTCGAGCAACGTGGATTCAAAGACATCCAACAAAGCCTCC 120 consensus_7576#1 ------------------------------------------------------------ consensus_7576#0 TATCCTCTTGCATCTTAAGCCATTGAAACAACAGCAGCTCAATCCCAACATATTTACTCT 180 consensus_7576#1 ------------------------------------------------------------ consensus_7576#0 TCTTACCTTCTCCATTGCATATATAATAGACACAGCTAGCTTTGTTGTACCATTGAATCA 240 consensus_7576#1 ---------------------------------GACGAGACAAGGGG---GATTGAATCA 24 * ** * * ********* consensus_7576#0 ATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCT 300 consensus_7576#1 ATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCT 84 ************************************************************ consensus_7576#0 TCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTG 360 consensus_7576#1 TCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTG 144 ************************************************************ consensus_7576#0 GCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAAC 420 consensus_7576#1 GCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAAC 204 ************************************************************ consensus_7576#0 ATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATG 480 consensus_7576#1 ATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATG 264 ************************************************************ consensus_7576#0 AAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGC 540 consensus_7576#1 AAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGC 324 ************************************************************ consensus_7576#0 TGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATT 600 consensus_7576#1 TGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATT 384 ************************************************************ consensus_7576#0 TTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGAT 660 consensus_7576#1 TTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGAT 444 ************************************************************ consensus_7576#0 CCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTT 720 consensus_7576#1 CCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATCTGCTCTT 504 **************************************************** ******* consensus_7576#0 ACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATAT 780 consensus_7576#1 ACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATAT 564 ************************************************************ consensus_7576#0 CTCAGAGGTTATAATAAGGTTGGGAAACGATTTTTCTAAAAAAAAAAAAAAAA 833 consensus_7576#1 CACA------------------------------------------------- 568 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||