cluster # 7584

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Oryza sativa
cluster # 7584 cluster # 7584 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7584#0 length = 728 sequences # 1

consensus_7584#1 length = 290 sequences # 2
consensus_7584#2 length = 206 sequences # 1

consensusID : consensus_7584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence

                              [TGGTCATTGCCTACCGGTAAACTCCCATACTTCCTTCTTTTGTTCGAGGGAGGCCATACATCTTCCTTCTTTGGTTGGATCCAGGTCAGAAAGTTATAGGGTGTGCGCAAACAAGTCTGAATTAATAAGAAGGGGCAGTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTCTTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCACCAGTATCTTAGTAAGATAGACACCGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTTCCTGTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACTTCTTAGGCGCTCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGGAGGCGGCCTCATGCGCCCTCATGCGGTAGCTGGGCGGCGAGGTACAACGCGCGGTGGGCGGCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGCTCTCCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTTTTAGAATTTGTGATTGATTGCATGGATCTGAGTTGTATAATTGTGATGCATTTGATTTGTGTGTAATTTTTTTAAGATTTGTGATCTATTTGATTTGTGTGTAAGTAACTTAGGATTTGTATTATGATGTGAATGAT]

[+] EMBL AK107728             [TGGTCATTGCCTACCGGTAAACTCCCATACTTCCTTCTTTTGTTCGAGGGAGGCCATACATCTTCCTTCTTTGGTTGGATCCAGGTCAGAAAGTTATAGGGTGTGCGCAAACAAGTCTGAATTAATAAGAAGGGGCAGTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTCTTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCACCAGTATCTTAGTAAGATAGACACCGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTTCCTGTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACTTCTTAGGCGCTCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGGAGGCGGCCTCATGCGCCCTCATGCGGTAGCTGGGCGGCGAGGTACAACGCGCGGTGGGCGGCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGCTCTCCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTTTTAGAATTTGTGATTGATTGCATGGATCTGAGTTGTATAATTGTGATGCATTTGATTTGTGTGTAATTTTTTTAAGATTTGTGATCTATTTGATTTGTGTGTAAGTAACTTAGGATTTGTATTATGATGTGAATGAT]




>consensus_7584#0
TGGTCATTGCCTACCGGTAAACTCCCATACTTCCTTCTTTTGTTCGAGGGAGGCCATACA
TCTTCCTTCTTTGGTTGGATCCAGGTCAGAAAGTTATAGGGTGTGCGCAAACAAGTCTGA
ATTAATAAGAAGGGGCAGTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTC
TTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCACCAGTATCTTAGTAAGATAGACAC
CGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTTCCT
GTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCT
CCCCACTTCTTAGGCGCTCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGG
AGGCGGCCTCATGCGCCCTCATGCGGTAGCTGGGCGGCGAGGTACAACGCGCGGTGGGCG
GCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGCTCT
CCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTTTTAGAATTT
GTGATTGATTGCATGGATCTGAGTTGTATAATTGTGATGCATTTGATTTGTGTGTAATTT
TTTTAAGATTTGTGATCTATTTGATTTGTGTGTAAGTAACTTAGGATTTGTATTATGATG
TGAATGAT

consensusID : consensus_7584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 290
fasta sequence

                              [TCACATCCGACGGCCGGCGTCTGCGGGCAGGTGGCCAGCGGGCGGCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCAGCGCGCCAACCATGGTGAGTGGCGGCAGGCGGGCGGCAGTGCACCGGTTCTCCTCTCCTTTTTTTTAATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAATTTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGTGTAATTTTTTTAAAATTTGTGATGTAAAAA]

[+] EMBL AU076062             [TCACATCCGACGGCCGGCGTCTGCGGGCAGGTGGCCAGCGGGCGGCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCAGCGCGCCAACCATGGTGAGTGGCGGCAGGCGGGCGGCAGTGCACCGGTTCTCCTCTCCTTTTTTTTAATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAATTTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGTGTAATTTTTTTAAAATTTGTGATGTAAAAA]
[+] EMBL AU076155             [TCACATCCGACGGCCGGCGTCTGCGGGCAGGTGGCCAGCGGGCGGCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCA NGCGCCAACCATGGTGAGTGGCGGCAGGCGGGCGGCAGTGCACCGGTTCTCCTCTCCTTTTTTTTAATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAATTTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGTGTAATTTTTTTAAAATTTGTGATGTAAAAA]




>consensus_7584#1
TCACATCCGACGGCCGGCGTCTGCGGGCAGGTGGCCAGCGGGCGGCGGGGCAGCACGCGC
GGCGGGCGGCGGGGCTGCGCATAGGGCGGCAGCGCGCCAACCATGGTGAGTGGCGGCAGG
CGGGCGGCAGTGCACCGGTTCTCCTCTCCTTTTTTTTAATAATTTGTGATTGAGAGATGT
ATAATTTCTTTTATTACAATTTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTT
GTGATGCATTTAATTTGTGTGTAATTTTTTTAAAATTTGTGATGTAAAAA

consensusID : consensus_7584#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [GNNNNNNGAGGCAGCCTCGCNNNNNNNGGCGGCGCGGAGNNGAAGGCAGCCTCACGCGCCCTCATGTGGTGGCCGGGCGGCGAGGCACAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGTTCTCCTCTTTTTTTTTATAATTTGTGATTGAGAGATGTATAATTTCTTTTTTAGAATTTGTGATTCAT]

[-] EMBL CF196641             [GNNNNNNGAGGCAGCCTCGCNNNNNNNGGCGGCGCGGAGNNGAAGGCAGCCTCACGCGCCCTCATGTGGTGGCCGGGCGGCGAGGCACAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGTTCTCCTCTTTTTTTTTATAATTTGTGATTGAGAGATGTATAATTTCTTTTTTAGAATTTGTGATTCAT]




>consensus_7584#2
GNNNNNNGAGGCAGCCTCGCNNNNNNNGGCGGCGCGGAGNNGAAGGCAGCCTCACGCGCC
CTCATGTGGTGGCCGGGCGGCGAGGCACAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACG
GGGCGGCAGCGCGCCGGTTCTCCTCTTTTTTTTTATAATTTGTGATTGAGAGATGTATAA
TTTCTTTTTTAGAATTTGTGATTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7584#0      TGGTCATTGCCTACCGGTAAACTCCCATACTTCCTTCTTTTGTTCGAGGGAGGCCATACA 60
consensus_7584#2      ------------------------------------------------------------
consensus_7584#1      ------------------------------------------------------------
                                                                                  

consensus_7584#0      TCTTCCTTCTTTGGTTGGATCCAGGTCAGAAAGTTATAGGGTGTGCGCAAACAAGTCTGA 120
consensus_7584#2      ------------------------------------------------------------
consensus_7584#1      ------------------------------------------------------------
                                                                                  

consensus_7584#0      ATTAATAAGAAGGGGCAGTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTC 180
consensus_7584#2      ------------------------------------------------------------
consensus_7584#1      ------------------------------------------------------------
                                                                                  

consensus_7584#0      TTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCACCAGTATCTTAGTAAGATAGACAC 240
consensus_7584#2      ------------------------------------------------------------
consensus_7584#1      ------------------------------------------------------------
                                                                                  

consensus_7584#0      CGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTTCCT 300
consensus_7584#2      ------------------------------------------------------------
consensus_7584#1      ------------------------------------------------------------
                                                                                  

consensus_7584#0      GTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCT 360
consensus_7584#2      ------------------------------------------------------------
consensus_7584#1      ------------------------------------------------------------
                                                                                  

consensus_7584#0      CCCCACTTCTTAGGCGCTCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGG 420
consensus_7584#2      --------------GNNNNNNGAGGCAGCCTCGCNNNNNNNGGCG---GCGCGGAGNNGA 43
consensus_7584#1      ---------------TCACATCCGACGGCCG-GCGTCTGCGGGCAGGTGGCCAGCGGGCG 44
                                               *  *    *       ***    *  * *      

consensus_7584#0      AGGCGGCCTCATGCGCC-CTCATGCGGTAGCTGGGCGGCGAGGTACAACGCGCGGTGGGC 479
consensus_7584#2      AGGCAGCCTCACGCGCC-CTCATGTGGTGGCCGGGCGGCGAGGCACA------------- 89
consensus_7584#1      GCGGGGCAGCACGCGCGGCGGGCGGCGGGGCTGCGCATAGGGCGGCAGC----------- 93
                        *  **  ** ****  *    *  *  ** * **   * *   **             

consensus_7584#0      GGCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGCTC 539
consensus_7584#2      ---------GCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGTTC 140
consensus_7584#1      ---------GCGCCAACCATGGTGAGTGGCGGCAGGC---GGGCGGCAGTGCACCGGTTC 141
                               ****    * ***   * ** * *  **   ********* ** **** **

consensus_7584#0      TCCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTT-TTAGAAT 598
consensus_7584#2      TCCTCTTTTTTTTT----ATAATTTGTGATTGAGAGATGTATAATTTCTTTT-TTAGAAT 195
consensus_7584#1      TCCTCTCCTTTTTTTT-AATAATTTGTGATTGAGAGATGTATAATTTCTTTTATTACAAT 200
                      ******  ******    ***************** **************** *** ***

consensus_7584#0      TTGTGATTGATTGCATGGATCTGAGTTGTATAAT-----TGTGATGCATTTGATTTGTGT 653
consensus_7584#2      TTGTGATTCAT------------------------------------------------- 206
consensus_7584#1      TTGTGATTCATTGGATGGATCTGAGATGTGTAATCGATTTGTGATGCATTTAATTTGTGT 260
                      ******** **                                                 

consensus_7584#0      GTAATTTTTTTAAGATTTGTGATCTATTTGATTTGTGTGTAAGTAACTTAGGATTTGTAT 713
consensus_7584#2      ------------------------------------------------------------
consensus_7584#1      GTAATTTTTTTAAAATTTGTGATGTAAAAA------------------------------ 290
                                                                                  

consensus_7584#0      TATGATGTGAATGAT 728
consensus_7584#2      ---------------
consensus_7584#1      ---------------