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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1437 fasta sequence
[GAGAGAAGAAGCTCAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCACCCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATTGGCCACCCTGCTGGACTCACTGACTGTTAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTTTGTTCATGTTTGCAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGTTAGTGTCAAGGCATGGACCTTCATGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGATGACGAGGAAATGGAAACACCAAGTTCAACACATAAGTCAAGTAAAACAAACTATGACACAAAAATGAAAAGAAGCAGCTCTACTCATGGAGAGAAGCTGCCAACAAAGGAACCTGGAAATTATTTCACATACTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGATTATACTTCTGAGAATCCTAGGATAGTTATGCA-GTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGACAACATAATTGTCAGACTGGCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACA-GGTGGTCTAGGCC-ACCAAATACTCTGTACATACACCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCCTCTGATATTCTTGAAATGTTGGAAGGGCGCACAAAAACA-TTCTTTTCTATTTCTTTGAAATAGTCAGTAGGGGAAGTTTGCTTCCCCA-TGGTTTCTTTGTGTGCCTGCGTTGCTATGTCTCGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCACCTGAAAAAGCTGTAAATTGATGATGGCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAATCCTCTTTTCTCGCAACGCTTGTTTGGCACCGTGATCATGTTTCATGCTATTAAAATTGTACCGGGCTTTCATCTCTGACAATAGCATGCCGTAT]
[+] EMBL AK120485 [GAGAGAAGAAGCTCAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCACCCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATTGGCCACCCTGCTGGACTCACTGACTGTTAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTTTGTTCATGTTTGCAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGTTAGTGTCAAGGCATGGACCTTCATGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGATGACGAGGAAATGGAAACACCAAGTTCAACACATAAGTCAAGTAAAACAAACTATGACACAAAAATGAAAAGAAGCAGCTCTACTCATGGAGAGAAGCTGCCAACAAAGGAACCTGGAAATTATTTCACATACTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGATTATACTTCTGAGAATCCTAGGATAGTTATGCA GTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGACAACATAATTGTCAGACTGGCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACA GGTGGTCTAGGCC ACCAAATACTCTGTACATACACCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCCTCTGATATTCTTGAAATGTTGGAAGGGCGCACAAAAACA TTCTTTTCTATTTCTTTGAAATAGTCAGTAGGGGAAGTTTGCTTCCCCA TGGTTTCTTTGTGTGCCTGCGTTGCTATGTCTCGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCACCTGAAAAAGCTGTAAATTGATGATGGCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAATCCTCTTTTCTCGCAACGCTTGTTTGGCACCGTGATCATGTTTCATGCTATTAAAATTGTACCGGGCTTTCATCTCTGACAATAGCATGCCGTAT]
[+] EMBL AU065800 [ ccgAGAAGCTCAACCCAATCCCCTCCTCTNCCCCAATTCCGCCGCCGCCCCCNGCTCGGATCCNCCCCCACNCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACNGCCGGTGACTCGACNAACTCGTCTCGGTT ]
[+] EMBL BM420319 [ TAGGATAGTAATCCACGNGCTCACATCATTTCCCCCTT GCTGTATTTATGAGTGGATGGAAAGAAGTGAA CATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGAC ACATAATTGTCAGACTGGCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACACGGCGGTCTAGGCCNCCCCAATACTCTGTACATACCCCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCCTCTGATATTCTTGAAATGTTGGAAGGGCGCACNAAAACACTTCTTTTCTATTTCTTTGAAATAGTCCGTAGGGGAAGTTTGCTTCCCCACTGGTTTCTTTGTGTGCCTGCGTTGCTATGTCTCGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCCCCTGAAGAAGCTGTAAATTGATGATGGCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAAaaaaaaaa ]
consensusID : consensus_7587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCGCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGCCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATCAGTTTTCTACCTCTGAGCATTGGTCACCCTGCTGGACTCACTGGCTGTTAAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTCTGTTCATGTCTACAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGCTAGTGTCAAGGCATGGACCTTCGTGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGA]
[+] EMBL BF430555 [CAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCGCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGCCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATCAGTTTTCTACCTCTGAGCATTGGTCACCCTGCTGGACTCACTGGCTGTTAAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTCTGTTCATGTCTACAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGCTAGTGTCAAGGCATGGACCTTCGTGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7587#0 GAGAGAAGAAGCTCAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTC 60
consensus_7587#1 -------------CAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTC 47
***********************************************
consensus_7587#0 GGATCCTCCCCCACCCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTT 120
consensus_7587#1 GGATCCTCCCCCGC---CGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGCCTCGTCTCCTT 104
************ * ******************************* ***********
consensus_7587#0 GCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCG 180
consensus_7587#1 GCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCG 164
************************************************************
consensus_7587#0 AGCTGGGAGATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTA 240
consensus_7587#1 AGCTGGGAGATATTG---AGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTA 221
*************** ******************************************
consensus_7587#0 GCAT---------------------TGGCCACCCTGCTGGACTCACTGACTGTTAAAA-C 278
consensus_7587#1 GCATCAGTTTTCTACCTCTGAGCATTGGTCACCCTGCTGGACTCACTGGCTGTTAAAAAC 281
**** *** ******************* ********* *
consensus_7587#0 GGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTTTG 338
consensus_7587#1 GGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTCTG 341
********************************************************* **
consensus_7587#0 TTCATGTTTGCAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGG 398
consensus_7587#1 TTCATGTCTACAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGG 401
******* * **************************************************
consensus_7587#0 GGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATT 458
consensus_7587#1 GGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATT 461
************************************************************
consensus_7587#0 CCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATC 518
consensus_7587#1 CCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATC 521
************************************************************
consensus_7587#0 TGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAG 578
consensus_7587#1 TGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAG 581
************************************************************
consensus_7587#0 ATTCTCCCCTCCTCAGCGTGATTGGTTAGTGTCAAGGCATGGACCTTCATGCCATTCCCC 638
consensus_7587#1 ATTCTCCCCTCCTCAGCGTGATTGGCTAGTGTCAAGGCATGGACCTTCGTGCCATTCCCC 641
************************* ********************** ***********
consensus_7587#0 AGAGGAATCAGAACCACTGAGGGCAAATGATGACGAGGAAATGGAAACACCAAGTTCAAC 698
consensus_7587#1 AGAGGAATCAGAACCACTGAGGGCAAATGA------------------------------ 671
******************************
consensus_7587#0 ACATAAGTCAAGTAAAACAAACTATGACACAAAAATGAAAAGAAGCAGCTCTACTCATGG 758
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 AGAGAAGCTGCCAACAAAGGAACCTGGAAATTATTTCACATACTTTTCCCCATCCGCTGA 818
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 AGATGAAGATGTCTGCCCAACTTGTCTTGAAGATTATACTTCTGAGAATCCTAGGATAGT 878
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 TATGCAGTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGA 938
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 AGCATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGACAACATAATTGTCAGACTG 998
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 GCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACAGGTGGTCTAGGCC 1058
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 ACCAAATACTCTGTACATACACCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCC 1118
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 TCTGATATTCTTGAAATGTTGGAAGGGCGCACAAAAACATTCTTTTCTATTTCTTTGAAA 1178
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 TAGTCAGTAGGGGAAGTTTGCTTCCCCATGGTTTCTTTGTGTGCCTGCGTTGCTATGTCT 1238
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 CGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCACCTGAAAAAGCTGTAAATTGATGATG 1298
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 GCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAATCCTCTTTTCTCGCAA 1358
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 CGCTTGTTTGGCACCGTGATCATGTTTCATGCTATTAAAATTGTACCGGGCTTTCATCTC 1418
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 TGACAATAGCATGCCGTAT 1437
consensus_7587#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||