These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [AAGGGGTGTAGTGAAGGATGAGATCGAGCAACTCAGAACCAATCTTGGTTCCACGCATGACGACCTCATCAAGCTCTCGGAGGTCCAGGACCCTCCCAACGCAGCGAGGTACTGGATGAAAGATGTGCGCGAACTGTCCTATGACATGGACGACTGGATCGACCACTTCATCCAGCTAAACGGCGATGTGAAAAACGATTGGATTGGAAAGATCTCAGGATTCAAGGCTCGTTGGGAGGAGGTGAAAGATCAGTACATCAGGTATAATCTTGTTGATTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTACTTTATTATAATTGATGATTTATGGGCTATATCAGTATGGGATGTTCTTAGCCGTGGTTTTCCGGATAATAATAGTTGCAGCAGAATAATAATAACAACAACAGTTGAGGACATTG] [+] EMBL CB635921 [AAGGGGTGTAGTGAAGGATGAGATCGAGCAACTCAGAACCAATCTTGGTTCCACGCATGACGACCTCATCAAGCTCTCGGAGGTCCAGGACCCTCCCAACGCAGCGAGGTACTGGATGAAAGATGTGCGCGAACTGTCCTATGACATGGACGACTGGATCGACCACTTCATCCAGCTAAACGGCGATGTGAAAAACGATTGGATTGGAAAGATCTCAGGATTCAAGGCTCGTTGGGAGGAGGTGAAAGATCAGTACATCAGGTATAATCTTGTTGATTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTACTTTATTATAATTGATGATTTATGGGCTATATCAGTATGGGATGTTCTTAGCCGTGGTTTTCCGGATAATAATAGTTGCAGCAGAATAATAATAACAACAACAGTTGAGGACATTG] consensusID : consensus_759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [GTATAATCTTGTTGANTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTTTTTTCTTGATCCACTTGTTGTCTCATACTTCCTCTATTCTAAAATATAGGGCACAACTATTTTTTAAAGGTGTTTCATAATATAAGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTTCTCTCCTAAATTATTATTTTTTAAATCATACACTCACGAGATGTTTAATTCTATTGGGTGCATGTATTGTATTAGTTGGATTGATTCAAATAAAGATGTGATAGTAATTGTTTCTTAAAAAAAAAA] [-] EMBL CA759316 [GTATAATCTTGTTGANTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTTTTTTCTTGATCCACTTGTTGTCTCATACTTCCTCTATTCTAAAATATAGGGCACAACTATTTTTTAAAGGTGTTTCATAATATAAGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTTCTCTCCTAAATTATTATTTTTTAAATCATACACTCACGAGATGTTTAATTCTATTGGGTGCATGTATTGTATTAGTTGGATTGATTCAAATAAAGATGTGATAGTAATTGTTTCTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_759#0 AAGGGGTGTAGTGAAGGATGAGATCGAGCAACTCAGAACCAATCTTGGTTCCACGCATGA 60 consensus_759#1 ------------------------------------------------------------ consensus_759#0 CGACCTCATCAAGCTCTCGGAGGTCCAGGACCCTCCCAACGCAGCGAGGTACTGGATGAA 120 consensus_759#1 ------------------------------------------------------------ consensus_759#0 AGATGTGCGCGAACTGTCCTATGACATGGACGACTGGATCGACCACTTCATCCAGCTAAA 180 consensus_759#1 ------------------------------------------------------------ consensus_759#0 CGGCGATGTGAAAAACGATTGGATTGGAAAGATCTCAGGATTCAAGGCTCGTTGGGAGGA 240 consensus_759#1 ------------------------------------------------------------ consensus_759#0 GGTGAAAGATCAGTACATCAGGTATAATCTTGTTGATTGCGTCCCTAGCTCTACTAACAT 300 consensus_759#1 ---------------------GTATAATCTTGTTGANTGCGTCCCTAGCTCTACTAACAT 39 *************** *********************** consensus_759#0 TGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGG 360 consensus_759#1 TGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGG 99 ************************************************************ consensus_759#0 CATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCT 420 consensus_759#1 CATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCT 159 ************************************************************ consensus_759#0 GGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATG 480 consensus_759#1 GGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATG 219 ************************************************************ consensus_759#0 GCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGA 540 consensus_759#1 GCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGA 279 ************************************************************ consensus_759#0 TATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGC 600 consensus_759#1 TATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGC 339 ************************************************************ consensus_759#0 TTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTACTT 660 consensus_759#1 TTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTTTTT 399 ******************************************************** ** consensus_759#0 TATTA---TAATTGATGATTTATGGG--CTATATC----AGTATGGGATGTTCTTAGCCG 711 consensus_759#1 TCTTGATCCACTTGTTGTCTCATACTTCCTCTATTCTAAAATATAGGGCACAACTATTTT 459 * ** * *** ** * ** ** *** * *** ** ** consensus_759#0 T----GGTTTTCCGGATAATAATAGTTGCA-----GCAGAATAATAA--TAACAACAACA 760 consensus_759#1 TTAAAGGTGTTTCATAATATAAGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTT 519 * *** ** * * **** * *** *** **** * ** ** consensus_759#0 GTTGAGGACATTG----------------------------------------------- 773 consensus_759#1 CTCTCCTAAATTATTATTTTTTAAATCATACACTCACGAGATGTTTAATTCTATTGGGTG 579 * * *** consensus_759#0 ------------------------------------------------------------ consensus_759#1 CATGTATTGTATTAGTTGGATTGATTCAAATAAAGATGTGATAGTAATTGTTTCTTAAAA 639 consensus_759#0 ------ consensus_759#1 AAAAAA 645 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||