These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1527 fasta sequence [CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCTCCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGCCACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTGCGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGGCGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCTGCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCGGCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGTGGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGAGCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCATCCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACCCGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGACAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGA-GGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG-TTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTTGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCTTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGGTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCATACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACTAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGGCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAATGAGTATCTTTCCATCTGTCTTTCCAATC] [+] EMBL AK120534 [CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCTCCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGCCACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTGCGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGGCGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCTGCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCGGCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGTGGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGAGCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCATCCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACCCGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGACAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGA GGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG TTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTTGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCTTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGGTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCATACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACTAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGGCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAATGAGTATCTTTCCATCTGTCTTTCCAATC] [+] EMBL OSS1034A [ GATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGNCCATAGGTGAAGAGAGGAGGTAAAACAAGGNAATNTAATNATGGGTGAGATCCAGACANGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCT ] consensusID : consensus_7591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 449 fasta sequence [CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACA-AGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTG-CTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAACTCGAGACT] [-] EMBL CA758287 [CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACA AGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTG CTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAACTCGAGACT] [+] EMBL BM420663 [ GGAGTTAAAACACAGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACNATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG TTTTTTTTTCTCNTTACCTTTTTTGCCTCCTCTCTCTCTCTCNTCCTCTCTCT TAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAA CAAGAAAAGAACAAGGAAAAGGTGGGNTGAGAACCCCNTTGGGCCTGTTTTTTTTGAAA AAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7591#0 CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCT 60 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGC 120 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTG 180 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGG 240 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCT 300 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCG 360 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGT 420 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGA 480 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCAT 540 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACC 600 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGA 660 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCA 720 consensus_7591#1 -------------------CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCA 41 ***************************************** consensus_7591#0 CCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAG 780 consensus_7591#1 CCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAG 101 ************************************************************ consensus_7591#0 ACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTG 840 consensus_7591#1 ACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTG 161 ************************************************************ consensus_7591#0 AGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATC 900 consensus_7591#1 AGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATC 221 ************************************************************ consensus_7591#0 TACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTT-CTCTTTACCTTTTTTG 959 consensus_7591#1 TACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTG 281 ******************************************* **************** consensus_7591#0 CCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTT 1019 consensus_7591#1 CCTCCTCTCTCTCTCTCT--TCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTT 339 ****************** **************************************** consensus_7591#0 TGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATT 1079 consensus_7591#1 TGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATT 399 ************************************************************ consensus_7591#0 GGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGT 1139 consensus_7591#1 GGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAAC--TCGAGACT-------- 449 ******* *************** * ** ** * *** consensus_7591#0 TGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGC 1199 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 TTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTG 1259 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCAT 1319 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 ACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAAC 1379 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 TAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTG 1439 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAAT 1499 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GAGTATCTTTCCATCTGTCTTTCCAATC 1527 consensus_7591#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||