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Oryza sativa
cluster # 7591 cluster # 7591       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7591#0 length = 1527 sequences # 2  
consensus_7591#1 length = 449 sequences # 2  

consensusID : consensus_7591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1527
fasta sequence
                              [CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCTCCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGCCACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTGCGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGGCGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCTGCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCGGCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGTGGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGAGCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCATCCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACCCGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGACAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGA-GGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG-TTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTTGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCTTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGGTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCATACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACTAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGGCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAATGAGTATCTTTCCATCTGTCTTTCCAATC]

[+] EMBL AK120534             [CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCTCCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGCCACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTGCGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGGCGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCTGCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCGGCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGTGGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGAGCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCATCCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACCCGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGACAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGA GGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG TTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTTGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCTTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGGTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCATACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACTAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGGCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAATGAGTATCTTTCCATCTGTCTTTCCAATC]
[+] EMBL OSS1034A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGNCCATAGGTGAAGAGAGGAGGTAAAACAAGGNAATNTAATNATGGGTGAGATCCAGACANGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]


>consensus_7591#0 CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCT CCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGC CACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTG CGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGG CGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCT GCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCG GCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGT GGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGA GCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCAT CCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACC CGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGA CAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCA CCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAG ACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTG AGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATC TACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTCTCTTTACCTTTTTTGC CTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTT GTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTG GGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTT GGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCT TGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGG TGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCATA CAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACT AGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGG CCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAATG AGTATCTTTCCATCTGTCTTTCCAATC



consensusID : consensus_7591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 449
fasta sequence
                              [CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACA-AGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTG-CTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAACTCGAGACT]

[-] EMBL CA758287             [CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACA AGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTG CTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAACTCGAGACT]
[+] EMBL BM420663             [                                                              GGAGTTAAAACACAGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACNATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG TTTTTTTTTCTCNTTACCTTTTTTGCCTCCTCTCTCTCTCTCNTCCTCTCTCT TAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAA CAAGAAAAGAACAAGGAAAAGGTGGGNTGAGAACCCCNTTGGGCCTGTTTTTTTTGAAA    AAAAAAA                    ]


>consensus_7591#1 CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGA GAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACAAT TGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGC AAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGG TACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTT CCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGC AAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGTTTTTTTTGAGATT CTAAAAAAAAAAAAAAAAAACTCGAGACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7591#0      CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCT 60
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      CCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGC 120
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      CACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTG 180
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      CGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGG 240
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      CGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCT 300
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      GCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCG 360
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      GCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGT 420
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      GGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGA 480
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      GCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCAT 540
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      CCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACC 600
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      CGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGA 660
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      CAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCA 720
consensus_7591#1      -------------------CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCA 41
                                         *****************************************

consensus_7591#0      CCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAG 780
consensus_7591#1      CCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAG 101
                      ************************************************************

consensus_7591#0      ACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTG 840
consensus_7591#1      ACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTG 161
                      ************************************************************

consensus_7591#0      AGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATC 900
consensus_7591#1      AGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATC 221
                      ************************************************************

consensus_7591#0      TACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTT-CTCTTTACCTTTTTTG 959
consensus_7591#1      TACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTG 281
                      ******************************************* ****************

consensus_7591#0      CCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTT 1019
consensus_7591#1      CCTCCTCTCTCTCTCTCT--TCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTT 339
                      ******************  ****************************************

consensus_7591#0      TGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATT 1079
consensus_7591#1      TGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATT 399
                      ************************************************************

consensus_7591#0      GGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGT 1139
consensus_7591#1      GGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAAC--TCGAGACT-------- 449
                      ******* ***************  * **   **          *    ***        

consensus_7591#0      TGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGC 1199
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      TTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTG 1259
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      GTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCAT 1319
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      ACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAAC 1379
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      TAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTG 1439
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      GCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAAT 1499
consensus_7591#1      ------------------------------------------------------------
                                                                                  

consensus_7591#0      GAGTATCTTTCCATCTGTCTTTCCAATC 1527
consensus_7591#1      ----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)