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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1302 fasta sequence
[CGCTTGCTCCGCCTCCTCCGCCGATCTCCCCCGCGGCTCCGCCTCTTTCTCCCTTGCTCCGCCTCCTCCTTCGCCGATCTCCCCCGCCGCAGGCGCTCACGCCCGCTCCGCCTCAGCCGTCGCTCACGCTCGCTTCCGACTCCCTTGCTCCGCCGTTGATTTCGCCCGCCGCACCAGGTCACGGCAGCCTCGACCTCTGCCGATCTCCCCCGCCGCACCAGTCCGGGGTGGAGATGGACGGCGACGGATACGGCGATGGCTCCGGCACAAGGGACTTCATGTCGCAGTCCGATTCACACGCCGACCACGACGAGCTCGACCCCTACACCGACTCCCTGTACTACACTGGATCCCGCAGCGGCAGTGCCTCCAGGATAGGCATGGCCGCCCTCGACCTCAACTCCGGCGGGGATGGGTGGCCGGATTTGGGGAGCTACGAGGGTCTTCTTTGATCCGGCTCGCAAGGAGGCGTCATCAGCGGAGGAGGGGGCCACCTTTGGGGCGGCGCACATGGACGCGGCGTCGGCGGATCTGGGAGCCACCATCGCTCCGCCTCGCAAGGAGGCGGCTCTGCTGATCTCCCTCCCGTGCGTGCTGTGAGTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCCGAGGCGCCACGGCAGCTCGCGCCAATTCCTCACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAGGGGCCGTGGTGGTGGTCGAGGCACG-CAGGCGACCGGAGCCAGGGGCCGTGGTGGTCGTCGATCCACAT-CCACGGCTGCCACCGTCTCTGAAGTCAACTTGGACGTCGACTCCGACAACGTCGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAGGGCCAATTGGACAGAGGACAATACCAGCTTGCTGTGTGAAATTTGGGTTGACCAGATCAATAAGGGAAACTGCGTGAATGGACTCATGCAGAAGACTGGGATGAGGGAGATTATCGCTGCTTATCATGCAGCAACCAACCTGCGGCATGGTAGATCCCAAATTACTAATAGGATTAGGCAACTGAAGGGATTGTGGCAATTCATTCAAACCCTACGCACAAACACTGGATTCAATAGAATATGACTACTGTAGTGTTGTAATATTTGTGTTGTATGGACTTTTAAAATTGTGCACTGGGACTTTTAATATGTATGTGGACATTTTAATGTTTCTATGCTATGGACTTTTAATAATTATTTGGACATTTTTTTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK106944 [CGCTTGCTCCGCCTCCTCCGCCGATCTCCCCCGCGGCTCCGCCTCTTTCTCCCTTGCTCCGCCTCCTCCTTCGCCGATCTCCCCCGCCGCAGGCGCTCACGCCCGCTCCGCCTCAGCCGTCGCTCACGCTCGCTTCCGACTCCCTTGCTCCGCCGTTGATTTCGCCCGCCGCACCAGGTCACGGCAGCCTCGACCTCTGCCGATCTCCCCCGCCGCACCAGTCCGGGGTGGAGATGGACGGCGACGGATACGGCGATGGCTCCGGCACAAGGGACTTCATGTCGCAGTCCGATTCACACGCCGACCACGACGAGCTCGACCCCTACACCGACTCCCTGTACTACACTGGATCCCGCAGCGGCAGTGCCTCCAGGATAGGCATGGCCGCCCTCGACCTCAACTCCGGCGGGGATGGGTGGCCGGATTTGGGGAGCTACGAGGGTCTTCTTTGATCCGGCTCGCAAGGAGGCGTCATCAGCGGAGGAGGGGGCCACCTTTGGGGCGGCGCACATGGACGCGGCGTCGGCGGATCTGGGAGCCACCATCGCTCCGCCTCGCAAGGAGGCGGCTCTGCTGATCTCCCTCCCGTGCGTGCTGTGAGTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCCGAGGCGCCACGGCAGCTCGCGCCAATTCCTCACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAGGGGCCGTGGTGGTGGTCGAGGCACG CAGGCGACCGGAGCCAGGGGCCGTGGTGGTCGTCGATCCACAT CCACGGCTGCCACCGTCTCTGAAGTCAACTTGGACGTCGACTCCGACAACGTCGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAGGGCCAATTGGACAGAGGACAATACCAGCTTGCTGTGTGAAATTTGGGTTGACCAGATCAATAAGGGAAACTGCGTGAATGGACTCATGCAGAAGACTGGGATGAGGGAGATTATCGCTGCTTATCATGCAGCAACCAACCTGCGGCATGGTAGATCCCAAATTACTAATAGGATTAGGCAACTGAAGGGATTGTGGCAATTCATTCAAACCCTACGCACAAACACTGGATTCAATAGAATATGACTACTGTAGTGTTGTAATATTTGTGTTGTATGGACTTTTAAAATTGTGCACTGGGACTTTTAATATGTATGTGGACATTTTAATGTTTCTATGCTATGGACTTTTAATAATTATTTGGACAT ]
[+] EMBL CB661475 [ CCCGCGGCTCCGCCTCTTTCTCCCTTGCTCCGCCTCCTCCTTCGCCGATCTCCCCCGCCGCAGGCGCTCACGCCCGCTCCGCCTCAGCCGTCGCTCACGCTCGCTTCCGACTCCCTTGCTCCGCCGTTGATTTCGCCCGCCGCACCAGGTCACGGCAGCCTCGACCTCTGCCGATCTCCCCCGCCGCACCAGTCCGGGGTGGAGATGGACGGCGACGGATACGGCGATGGCTCCGGCACAAGGGACTTCATGTCGCAGTCCGATTCACACGCCGACCACGACGAGCTCGACCCCTACACCGACTCCCTGTACTACACTGGATCCCGCAGCGGCAGTGCCTCCAGGATAGGCATGGCCGCCCTCGACCTCAACTCCGGCGGGGATGGGTGGCCGGATTTGGGGAGCTACGAGGGTCTTCTTTGATCCGGCTCGCAAGGAGGCGTCATCAGCGGAGGAGGGGGCCACCTTTGGGGCGGCGCACATGGACGCGGCGTCGGCGGATCTGGGAGCCACCATCGTTCCGCCTCGCAAGGAGGCGGCTCTGCTGATCTCCCTCCCGTGCGTGCTGTGAGTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCCGAGGCGCCACGGCAGCTCGCGCCAATTCCTCACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAGGGGCCGTGGTGGTGGTCGAGGCACG CAGGCGACCGGAGCCAGGGGCCGTGGTGGTCGTCGATCCACAT CCACGGCTGCCAC ]
[+] EMBL AU094778 [ AGGCACGTCAGGCGACCGGAGCCAGGGGCCGTGGTGGTCGTCGATCCACATCCCACGGCTGCCACCGTCTNTGAAGTCAACTTGGACGTCGACTCCGACAACGTCGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAGGGCCAATTGGACAGAGGACAATACCAGCTTGCTGTGTGAAATTTGGGTTGNCCAGATCAATAAGGGAAACTGCGTGAATGGACTCATGCAGAAGACTGGGATGAGGGAGATTATCGCTGCTTATCATGCAGCAACCAA CTGCGGCATGGTAGATCCCAAATTACTAATAGGATTAGGCAACTGAAGGGATTGTGGCAATTCATTCAAACCCTACGCACAAACACTGGATTCAATAGAATATGACTACTGTAGTGTTGTAATATTTGTGTTGTATGGACTTTTAAAATTGTGCACTGGGACTTTTAATATGTATGTGGACATTTTAATGTTTCTATGCTATGGACTTTTAATAATTATTTGGACATTTTTTTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[GCTCTGCTGATCTCCCTCCCGTGCGTGCTGTGAGTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCGGAGGCGCCACGGCAGCTCGCGCCAATTCTTCACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAGGGTCCGTGGTGGTGGTCGAGGCACGCAGGCGACCGGACCCAGGGGCCGTGGTGGTCGTCGATCCACATCCACGGCTGCCACCGTCTTTGAAGTCAACTTGGACGTAGACTCCGACATCGTCGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAGGGCCAATTGGACAGAGGACAATACCAGCTTGCTGTGTGAAATTTGGGTTGACCAGATCAATAAGGGAAACTGCGTGAATGGACTCATGCAGAAGATTGGGATGAGGGAGATTATCGTTGCTTATCATGCAGCAACCAACCTGCGGCATGGTAGATCCCAAATTATTAATAGGATTAGGCAACTGAAGGGATTGTGGCAATTCATTCAAACCCTACGCTCAACCACTGGATTCAATAGAATATGACTACTGTAGTGTTGTAATATTTGTGTGGTATGGACTTTTAAAATTGTGCACTGGGACTTTTAATATGTATGTGGACATTTTAATCTTTCTATGCTATGGACTTTTAATAATTATTTGGACATTTTTTTGTTGATATGGTACGTGCAATTTTGCGAGCTATTGATACATTTGCATTCAAAAAAGGA]
[-] EMBL CB661476 [GCTCTGCTGATCTCCCTCCCGTGCGTGCTGTGAGTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCGGAGGCGCCACGGCAGCTCGCGCCAATTCTTCACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAGGGTCCGTGGTGGTGGTCGAGGCACGCAGGCGACCGGACCCAGGGGCCGTGGTGGTCGTCGATCCACATCCACGGCTGCCACCGTCTTTGAAGTCAACTTGGACGTAGACTCCGACATCGTCGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAGGGCCAATTGGACAGAGGACAATACCAGCTTGCTGTGTGAAATTTGGGTTGACCAGATCAATAAGGGAAACTGCGTGAATGGACTCATGCAGAAGATTGGGATGAGGGAGATTATCGTTGCTTATCATGCAGCAACCAACCTGCGGCATGGTAGATCCCAAATTATTAATAGGATTAGGCAACTGAAGGGATTGTGGCAATTCATTCAAACCCTACGCTCAACCACTGGATTCAATAGAATATGACTACTGTAGTGTTGTAATATTTGTGTGGTATGGACTTTTAAAATTGTGCACTGGGACTTTTAATATGTATGTGGACATTTTAATCTTTCTATGCTATGGACTTTTAATAATTATTTGGACATTTTTTTGTTGATATGGTACGTGCAATTTTGCGAGCTATTGATACATTTGCATTCAAAAAAGGA]
consensusID : consensus_7597#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence
[TCTCTTCCGTCGCACCCTCTCTCTCTCTCGNCCCCAAAAAAATCCCCATCCGCTTGCTCCGNCTCCTCCGCCGATCTCCCCCGCGGCTCCGNCTCTTTCTCCCTTGCTCCGNCTCCNNCTTCGCCGATCTNCCCCGNCGCAGCTNCACGGCCGCTCCGCCTCAGCCGTCGNTCACGCTCGCTTCCGACTCCCTTGCTCCGNCGTTG]
[+] EMBL C91815 [TCTCTTCCGTCGCACCCTCTCTCTCTCTCGNCCCCAAAAAAATCCCCATCCGCTTGCTCCGNCTCCTCCGCCGATCTCCCCCGCGGCTCCGNCTCTTTCTCCCTTGCTCCGNCTCCNNCTTCGCCGATCTNCCCCGNCGCAGCTNCACGGCCGCTCCGCCTCAGCCGTCGNTCACGCTCGCTTCCGACTCCCTTGCTCCGNCGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7597#0 CGCTTGCTCCGCCTCCTCCGCCGATCTCCCCCGCGGCTCCGCCTCTTTCTCCCTTGCTCC 60
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 GCCTCCTCCTTCGCCGATCTCCCCCGCCGCAGGCGCTCACGCCCGCTCCGCCTCAGCCGT 120
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 CGCTCACGCTCGCTTCCGACTCCCTTGCTCCGCCGTTGATTTCGCCCGCCGCACCAGGTC 180
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 ACGGCAGCCTCGACCTCTGCCGATCTCCCCCGCCGCACCAGTCCGGGGTGGAGATGGACG 240
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 GCGACGGATACGGCGATGGCTCCGGCACAAGGGACTTCATGTCGCAGTCCGATTCACACG 300
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 CCGACCACGACGAGCTCGACCCCTACACCGACTCCCTGTACTACACTGGATCCCGCAGCG 360
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 GCAGTGCCTCCAGGATAGGCATGGCCGCCCTCGACCTCAACTCCGGCGGGGATGGGTGGC 420
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 CGGATTTGGGGAGCTACGAGGGTCTTCTTTGATCCGGCTCGCAAGGAGGCGTCATCAGCG 480
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 GAGGAGGGGGCCACCTTTGGGGCGGCGCACATGGACGCGGCGTCGGCGGATCTGGGAGCC 540
consensus_7597#1 ------------------------------------------------------------
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 ACCATCGCTCCGCCTCGCAAGGAGGCGGCTCTGCTGATCTCCCTCCCGTGCGTGCTGTGA 600
consensus_7597#1 ---------------------------GCTCTGCTGATCTCCCTCCCGTGCGTGCTGTGA 33
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 GTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCCGAGGCG--CCACGGC 658
consensus_7597#1 GTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCGGAGGCG--CCACGGC 91
consensus_7597#2 ----------TCTCTTCCGTCGCACCCTCTCTCTCTCTCGNCCCCAAAAAAATCCCCATC 50
*** ** *** * ** * * * * ** * *
consensus_7597#0 AGCTCGCGCCAATTCCTCACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAG 718
consensus_7597#1 AGCTCGCGCCAATTCTTCACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAG 151
consensus_7597#2 CGCTTGCTCCGNCTCCTCCGCCGATCTCCCCCGCGGCTCCGNCTCTTTCTCCCTTGCTCC 110
*** ** ** ** ** * ** ** * ** * * ** **
consensus_7597#0 GGGCCGTGGTGGTGGTCGAGGCACGCAGGCGACCGGAGCCAGGGGCCGTGGTGGTCGTCG 778
consensus_7597#1 GGTCCGTGGTGGTGGTCGAGGCACGCAGGCGACCGGACCCAGGGGCCGTGGTGGTCGTCG 211
consensus_7597#2 GNCTCCNNCT--TCGCCGATCTNCCCCGNCG--CAGCTNCACGG-CCGCTCCG--CCTCA 163
* * * * * *** * * * ** * * ** ** *** * * **
consensus_7597#0 ATCCACATCCACGGCTGCCACCGTCTCTGAAGTCAACTTGGACGTCGACTCCGACAACGT 838
consensus_7597#1 ATCCACATCCACGGCTGCCACCGTCTTTGAAGTCAACTTGGACGTAGACTCCGACATCGT 271
consensus_7597#2 GCCGTCGNTCACGCTCGCTTCCGACTCC----CTTGCTCCGNCGTTG------------- 206
* * **** ** *** ** ** * *** *
consensus_7597#0 CGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAG 898
consensus_7597#1 CGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAG 331
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 GGCCAATTGGACAGAGGACAATACCAGCTTGCTGTGTGAAATTTGGGTTGACCAGATCAA 958
consensus_7597#1 GGCCAATTGGACAGAGGACAATACCAGCTTGCTGTGTGAAATTTGGGTTGACCAGATCAA 391
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 TAAGGGAAACTGCGTGAATGGACTCATGCAGAAGACTGGGATGAGGGAGATTATCGCTGC 1018
consensus_7597#1 TAAGGGAAACTGCGTGAATGGACTCATGCAGAAGATTGGGATGAGGGAGATTATCGTTGC 451
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 TTATCATGCAGCAACCAACCTGCGGCATGGTAGATCCCAAATTACTAATAGGATTAGGCA 1078
consensus_7597#1 TTATCATGCAGCAACCAACCTGCGGCATGGTAGATCCCAAATTATTAATAGGATTAGGCA 511
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 ACTGAAGGGATTGTGGCAATTCATTCAAACCCTACGCACAAACACTGGATTCAATAGAAT 1138
consensus_7597#1 ACTGAAGGGATTGTGGCAATTCATTCAAACCCTACGCTCAACCACTGGATTCAATAGAAT 571
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 ATGACTACTGTAGTGTTGTAATATTTGTGTTGTATGGACTTTTAAAATTGTGCACTGGGA 1198
consensus_7597#1 ATGACTACTGTAGTGTTGTAATATTTGTGTGGTATGGACTTTTAAAATTGTGCACTGGGA 631
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 CTTTTAATATGTATGTGGACATTTTAATGTTTCTATGCTATGGACTTTTAATAATTATTT 1258
consensus_7597#1 CTTTTAATATGTATGTGGACATTTTAATCTTTCTATGCTATGGACTTTTAATAATTATTT 691
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 GGACATTTTTTTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 1302
consensus_7597#1 GGACATTTTTTTGTTGATATGGTACGTGCAATTTTGCGAGCTATTGATACATTTGCATTC 751
consensus_7597#2 ------------------------------------------------------------
consensus_7597#0 ---------
consensus_7597#1 AAAAAAGGA 760
consensus_7597#2 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||