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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[TTTTTTTTTTTTTGATCAAGCAAAATGCTAATCATGCGACTATTGTTACAGGTCTATTTTTATGGCAGGAGTTCCATGCAAAACTCGAAAAAACTAATTTCCATGCAAATTCTAATGCTCCACAAATAGCCAAGTTGTGACTACTGTATCTGTGAGATAATATTTGACACTGATCTTTCAGTTACGTTACAAGAAAAAACTTAATATGAAGAGATTACCATAATTTCATGCTTGTTGGGCCTTTTCTTCTTCTAACAGTAAATGAATAATGGATCTGACCACTTCATTGTCAACAAAAGTTGCCATCTCTGGCTTTCTTATCAATTCTTTCAGAACAGCATCAAGTGTTACGCGAAGTTGCTTGAATAGGACAGCAGTCTGTGCAGCAGCTGCCAGCCTTAACCATCCATCTATGATAACCACTCCTGTCTGATGTTGGATAACCATGGTACCACCAAACAGAAGGAGCGAGTAAGGAGAAATAACACTAGTATCACGTAGAAATACCTTACTTGTCTCAACCTTCTCAAGAAACACCAAAAATGGATATTGACCAGCTTTCAAGCTGTGGTTCATAGATAATGGGTGTATGTGAACTTCTCGTCGTCCATCATACCATCGAGGACGGCCCTTTCCAGACAGAAAATCAGATGGCTTCCTGCCACCTAGAGCTCCTGGATCAACACCC]
[+] EMBL CA762081 [TTTTTTTTTTTTTGATCAAGCAAAATGCTAATCATGCGACTATTGTTACAGGTCTATTTTTATGGCAGGAGTTCCATGCAAAACTCGAAAAAACTAATTTCCATGCAAATTCTAATGCTCCACAAATAGCCAAGTTGTGACTACTGTATCTGTGAGATAATATTTGACACTGATCTTTCAGTTACGTTACAAGAAAAAACTTAATATGAAGAGATTACCATAATTTCATGCTTGTTGGGCCTTTTCTTCTTCTAACAGTAAATGAATAATGGATCTGACCACTTCATTGTCAACAAAAGTTGCCATCTCTGGCTTTCTTATCAATTCTTTCAGAACAGCATCAAGTGTTACGCGAAGTTGCTTGAATAGGACAGCAGTCTGTGCAGCAGCTGCCAGCCTTAACCATCCATCTATGATAACCACTCCTGTCTGATGTTGGATAACCATGGTACCACCAAACAGAAGGAGCGAGTAAGGAGAAATAACACTAGTATCACGTAGAAATACCTTACTTGTCTCAACCTTCTCAAGAAACACCAAAAATGGATATTGACCAGCTTTCAAGCTGTGGTTCATAGATAATGGGTGTATGTGAACTTCTCGTCGTCCATCATACCATCGAGGACGGCCCTTTCCAGACAGAAAATCAGATGGCTTCCTGCCACCTAGAGCTCCTGGATCAACACCC]
consensusID : consensus_760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[ATTTTAGCATTTCCCACATTTATATTGATGTTAATGAATCTAGACATATATATTTATCTAGATTCATTAATCTCGATATGAATGTGGGAAATGCTAGAATGACTTGCATTGTGAAACGGGAGNGAAGTACTTGTGTTCCACATCAGGGACAGGAAGAATTTCAAGAATTTTTTCTCTATTGTAACATATATCTGTTTTTTGTTGCTTAGTCAAGCAAATGCCCCTTTCTGCATTGAAGCTTCAAAAATGCCAATCACCAAGCTTTGCAAGCCAAAATGGCTACGGAGTGTGGGGCAAGAGAGAACAGTTTGGATGCCTCTGAAGTTGATTCTGCTATGTTTCCGTTGTTATATGGTATACCATAATCCACTGACCATAATTTCATGCTTGTTGGGCCTTTTCTTCTTCTAACAGTAAATGAATAATGGATCTGACCACTTCATTGTCAACAAAAGTTGCCATCTCTGGCTTTCTTATCAATTCTTTCAGAACAGCATCAAGTGTTACGCGAAGTTGCTTGAATAGGACAGCAGTCT]
[-] EMBL CF323674 [ATTTTAGCATTTCCCACATTTATATTGATGTTAATGAATCTAGACATATATATTTATCTAGATTCATTAATCTCGATATGAATGTGGGAAATGCTAGAATGACTTGCATTGTGAAACGGGAGNGAAGTACTTGTGTTCCACATCAGGGACAGGAAGAATTTCAAGAATTTTTTCTCTATTGTAACATATATCTGTTTTTTGTTGCTTAGTCAAGCAAATGCCCCTTTCTGCATTGAAGCTTCAAAAATGCCAATCACCAAGCTTTGCAAGCCAAAATGGCTACGGAGTGTGGGGCAAGAGAGAACAGTTTGGATGCCTCTGAAGTTGATTCTGCTATGTTTCCGTTGTTATATGGTATACCATAATCCACTGACCATAATTTCATGCTTGTTGGGCCTTTTCTTCTTCTAACAGTAAATGAATAATGGATCTGACCACTTCATTGTCAACAAAAGTTGCCATCTCTGGCTTTCTTATCAATTCTTTCAGAACAGCATCAAGTGTTACGCGAAGTTGCTTGAATAGGACAGCAGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_760#0 ------------------------------------------------------------
consensus_760#1 ATTTTAGCATTTCCCACATTTATATTGATGTTAATGAATCTAGACATATATATTTATCTA 60
consensus_760#0 ------------------------------------------------------------
consensus_760#1 GATTCATTAATCTCGATATGAATGTGGGAAATGCTAGAATGACTTGCATTGTGAAACGGG 120
consensus_760#0 -------------TTTTTTTTTTTTTGATCAAGCAAAATGCTAA---TCATGCGACTATT 44
consensus_760#1 AGNGAAGTACTTGTGTTCCACATCAGGGACAGGAAGAATTTCAAGAATTTTTTCTCTATT 180
* ** * * ** * * *** ** * * *****
consensus_760#0 GTTACAGGTCTATTTTTATGGCAGGAGTTCCATGCAAAA----CTCGAAAAAACTAATTT 100
consensus_760#1 GTAACATATATCTGTTTTTTGTTGCTTAGTCAAGCAAATGCCCCTTTCTGCATTGAAGCT 240
** *** * * * *** * * * ** ***** ** * ** *
consensus_760#0 CCA----TGCAAATTCTAATGCTCCACAAAT--AGCCAAGTTGTGACTACTGTATCTGTG 154
consensus_760#1 TCAAAAATGCCAATCACCAAGCTTTGCAAGCCAAAATGGCTACGGAGTGTGGGGCAAGAG 300
** *** *** * *** *** * * ** * * * *
consensus_760#0 AGATAATATTTGACACT------GATCTTTCAGTTACGTTACAAG----AAAAAACTTAA 204
consensus_760#1 AGAACAGTTTGGATGCCTCTGAAGTTGATTCTGCTATGTTTCCGTTGTTATATGGTATAC 360
*** * ** ** * * * *** * ** *** * * * **
consensus_760#0 TATGAAGAGATTACCATAATTTCATGCTTGTTGGGCCTTTTCTTCTTCTAACAGTAAATG 264
consensus_760#1 CATAATCCACTGACCATAATTTCATGCTTGTTGGGCCTTTTCTTCTTCTAACAGTAAATG 420
** * * ************************************************
consensus_760#0 AATAATGGATCTGACCACTTCATTGTCAACAAAAGTTGCCATCTCTGGCTTTCTTATCAA 324
consensus_760#1 AATAATGGATCTGACCACTTCATTGTCAACAAAAGTTGCCATCTCTGGCTTTCTTATCAA 480
************************************************************
consensus_760#0 TTCTTTCAGAACAGCATCAAGTGTTACGCGAAGTTGCTTGAATAGGACAGCAGTCTGTGC 384
consensus_760#1 TTCTTTCAGAACAGCATCAAGTGTTACGCGAAGTTGCTTGAATAGGACAGCAGTCT---- 536
********************************************************
consensus_760#0 AGCAGCTGCCAGCCTTAACCATCCATCTATGATAACCACTCCTGTCTGATGTTGGATAAC 444
consensus_760#1 ------------------------------------------------------------
consensus_760#0 CATGGTACCACCAAACAGAAGGAGCGAGTAAGGAGAAATAACACTAGTATCACGTAGAAA 504
consensus_760#1 ------------------------------------------------------------
consensus_760#0 TACCTTACTTGTCTCAACCTTCTCAAGAAACACCAAAAATGGATATTGACCAGCTTTCAA 564
consensus_760#1 ------------------------------------------------------------
consensus_760#0 GCTGTGGTTCATAGATAATGGGTGTATGTGAACTTCTCGTCGTCCATCATACCATCGAGG 624
consensus_760#1 ------------------------------------------------------------
consensus_760#0 ACGGCCCTTTCCAGACAGAAAATCAGATGGCTTCCTGCCACCTAGAGCTCCTGGATCAAC 684
consensus_760#1 ------------------------------------------------------------
consensus_760#0 ACCC 688
consensus_760#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||