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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1305 fasta sequence
[ACAAACTAAAGCCAAAATTTGTGATAAACTGTGGCAACTCAATTACAACTTGTACAATCACCCACACACTTGACCTTTTCGGCCAGTTCAGCCACGACGGCAGGTGGCTCGTGGGCTAGTAGCCTATAGGCGCCACGTGTGGCCCAGGCAGAGCCCAAAACTCGTCAAGTCTTCTTCAACCCCTCGACTGGACAGGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGTGGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCCTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACCACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTGAGGTCCGCGAGGTTGGGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACGTAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCGGACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGAAGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGCGAGGATCTTCAAAAACCCTAGAGGTCAGATCGTTCCAACCGGTGGTTTTATGCCATGTCCAGTTTATGTCTTTTTTTTTTTTTTGAGGGAATGTCCAGTTTATGTTTTATTTATTTTTCTGCTGCACTTTTGGTTTTTTTTAAATGGAAAGTATTGATGGGTATTGGGCCGGCCATCTGCACTCGAGGCCCATGAGTCCACCAGTTGTCGTCTTAACCCTTTTAATAATGAGTAGTAGTT]
[-] EMBL AK070100 [ACAAACTAAAGCCAAAATTTGTGATAAACTGTGGCAACTCAATTACAACTTGTACAATCACCCACACACTTGACCTTTTCGGCCAGTTCAGCCACGACGGCAGGTGGCTCGTGGGCTAGTAGCCTATAGGCGCCACGTGTGGCCCAGGCAGAGCCCAAAACTCGTCAAGTCTTCTTCAACCCCTCGACTGGACAGGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGTAGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCCTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACCACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTGAGGTCCGCGAGGTTGGGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACGTAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCGGACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGAAGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGCGAGGATCTTCA ]
[+] EMBL AK069704 [ CCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGTGGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCCTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACCACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTGAGGTCCGCGAGGTTGGGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACGTAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCGGACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGAAGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGCGAGGATCTTCAAAAACCCTAGAGGTCAGATCGTTCCAACCGGTGGTTTTATGCCATGTCCAGTTTATGTCTTTTTTTTTTTTTTGAGGGAATGTCCAGTTTATGTTTTATTTATTTTTCTGCTGCACTTTTGGTTTTTTTTAAATGGAAAGTATTGATGGGTATTGGGCCGGCCATCTGCACTCGAGGCCCATGAGTCCACCAGTTGTCGTCTTAACCCTTTTAATAATGAGTAGTAGTT]
[+] EMBL CB639674 [ CCATCTCCATTCTCCACGGCCACGGCCGAGCGGTGGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGGCGCCGCGAAGCTCTTCCACGCCTTGCCGCGTG ]
consensusID : consensus_7601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[AACTCGTCAAGTCTTCTTCAACCCGTCGACTGGAAAGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGGTGTTGACTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCACTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACAACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGCGGCCGGGTCGAACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCAGAGCGCAAGGGTGAGTCCGCGAGGTGGGCTCCGTAGGCCAAGCTATTCCCTTAGTAGGTATTAG]
[-] EMBL BU673608 [AACTCGTCAAGTCTTCTTCAACCCGTCGACTGGAAAGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGGTGTTGACTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCACTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACAACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGCGGCCGGGTCGAACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCAGAGCGCAAGGGTGAGTCCGCGAGGTGGGCTCCGTAGGCCAAGCTATTCCCTTAGTAGGTATTAG]
consensusID : consensus_7601#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[GCTGGCACAGTGCTTACGGCGGAGGCTCCGTTCCCACGCCGCACGCGAAGCTCTCACCACAGCCATTGCCGTCGTGGGGCCCCTCCACCTCCGCGGCACGGGCTTCAGGGAACGGCACCTCCCAGCACCACGCAGGACGAAGCCAGCGAGCTCCGAGAGCGCAGCCGGAGCGGAGGACAGGGGCGGGCGGGGTCGACGCGCCGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTAAGGTCCGCGAGGTT]
[-] EMBL CB965981 [GCTGGCACAGTGCTTACGGCGGAGGCTCCGTTCCCACGCCGCACGCGAAGCTCTCACCACAGCCATTGCCGTCGTGGGGCCCCTCCACCTCCGCGGCACGGGCTTCAGGGAACGGCACCTCCCAGCACCACGCAGGACGAAGCCAGCGAGCTCCGAGAGCGCAGCCGGAGCGGAGGACAGGGGCGGGCGGGGTCGACGCGCCGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTAAGGTCCGCGAGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7601#0 ACAAACTAAAGCCAAAATTTGTGATAAACTGTGGCAACTCAATTACAACTTGTACAATCA 60
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 CCCACACACTTGACCTTTTCGGCCAGTTCAGCCACGACGGCAGGTGGCTCGTGGGCTAGT 120
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 AGCCTATAGGCGCCACGTGTGGCCCAGGCAGAGCCCAAAACTCGTCAAGTCTTCTTCAAC 180
consensus_7601#1 --------------------------------------AACTCGTCAAGTCTTCTTCAAC 22
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 CCCTCGACTGGACAGGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCC 240
consensus_7601#1 CCGTCGACTGGA-AAGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCC 81
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 ACGGCCACGGCCGAGCGGTGGTTG-CTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCG 299
consensus_7601#1 ACGGCCACGGCCGAGCGGGTGTTGACTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCG 141
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 ATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTT 359
consensus_7601#1 ATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTT 201
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 CTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCT 419
consensus_7601#1 CTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCT 261
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 GCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTC 479
consensus_7601#1 GCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTC 321
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 CTCCTCGTGGCGAACG-CGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTG 538
consensus_7601#1 CTCCTCGTGGCGAACGGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTG 381
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 GTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCG 598
consensus_7601#1 GTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCG 441
consensus_7601#2 ---------------------------------------GCTGGCACAGTGC---TTACG 18
** * * * * * **
consensus_7601#0 GCGGAGGCTCCTTCCCC--GCCGC-CGCGAAGCTCTC-CCACGCC--TTGCCG-CGTGGG 651
consensus_7601#1 GCGGAGGCTCCTTCCCC--GCCGC-CGCGAAGCTCTC-CCACGCC--TTGCCG-CGTGGG 494
consensus_7601#2 GCGGAGGCTCCGTTCCCACGCCGCACGCGAAGCTCTCACCACAGCCATTGCCGTCGTGGG 78
*********** * *** ***** ************ **** * ****** ******
consensus_7601#0 GCCCCTCCC-CTCCGCGGCACGGGCTTC-GGGAACGGCACCTCCC-GCACCACGC-GGAC 707
consensus_7601#1 GCCCCTCCCACTCCGCGGCACGGGCTTC-GGGAACGGCACCTCCC-GCACAACGC-GGAC 551
consensus_7601#2 GCCCCTCCACCTCCGCGGCACGGGCTTCAGGGAACGGCACCTCCCAGCACCACGCAGGAC 138
******** ****************** **************** **** **** ****
consensus_7601#0 GAAGCCAGCGAGCTCCGAGAGCGC-GCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACG 766
consensus_7601#1 GAAGCCAGCGAGCTCCGAGAGCGC-GCCGGAGCGGAGGACGGGC--GGCCGGGTCGAACG 608
consensus_7601#2 GAAGCCAGCGAGCTCCGAGAGCGCAGCCGGAGCGGAGGACAGGGGCGGGCGGGGTCGACG 198
************************ *************** ** ** *** ***
consensus_7601#0 CGCCGGGGAACCCGCCGAGCGCGTGGTCCTC-GAGCGCGAGGGTGAGGTCCGCGAGGTTG 825
consensus_7601#1 CGCCGGGGAACCCGCCGAGCGCGTGGTCCTCAGAGCGCAAGGGTGAG-TCCGCGAGGT-G 666
consensus_7601#2 CGCCGGG-AACCCGCCGAGCGCGTGGTCCTC-GAGCGCGAGGGTAAGGTCCGCGAGGTT- 255
******* *********************** ****** ***** ** **********
consensus_7601#0 GGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACG 885
consensus_7601#1 GGCTCCGTA-GGCCA--AGCTATTCCCTTAGTAGGTATTAG------------------- 704
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 TAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCG 945
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 GACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGA 1005
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 AGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGC 1065
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 GAGGATCTTCAAAAACCCTAGAGGTCAGATCGTTCCAACCGGTGGTTTTATGCCATGTCC 1125
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 AGTTTATGTCTTTTTTTTTTTTTTGAGGGAATGTCCAGTTTATGTTTTATTTATTTTTCT 1185
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 GCTGCACTTTTGGTTTTTTTTAAATGGAAAGTATTGATGGGTATTGGGCCGGCCATCTGC 1245
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
consensus_7601#0 ACTCGAGGCCCATGAGTCCACCAGTTGTCGTCTTAACCCTTTTAATAATGAGTAGTAGTT 1305
consensus_7601#1 ------------------------------------------------------------
consensus_7601#2 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||