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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1374 fasta sequence
[ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCGGCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGT-GGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAG-TTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGGACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATAATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCG-ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA-ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA]
[+] EMBL AK070222 [ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCGGCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGT GGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAG TTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGGACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATAATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCG ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGT ]
[+] EMBL CF312997 [ CTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTCGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGTGGGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAGTTTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGG ]
[-] EMBL CF312998 [ AAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCGNATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGACACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA]
[+] EMBL BI811607 [ GGCTCATGGTGCATGTATTAGGTCAGGTAA CGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTT TTGAGGGGGACTTCG ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCC ATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCC AACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAA ]
consensusID : consensus_7607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[GGCCGCTTTGGAACTTGGAACATCGCAGCATTTTAAATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGATATGGTCAGAGTACGGAAAGAAGTCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATACCTCTACAAATACCAGGAAAGGTGTCCAAGTCAA]
[+] EMBL OS31694 [GGCCGCTTTGGAACTTGGAACATCGCAGCATTTTAAATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGATATGGTCAGAGTACGGAAAGAAGTCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATACCTCTACAAATACCAGGAAAGGTGTCCAAGTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7607#0 ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCG 60
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 GCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAAT 120
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 CCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGC 180
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 TCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTC 240
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 CTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGTGGCGCGGTGCT 300
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 GCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCT 360
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 TGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGT 420
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 ATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAGTTGGTTTGCCTCCTA 480
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 AGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCA 540
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 GACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGT 600
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 TGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTG 660
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 GACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATA 720
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 ATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTT 780
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 GCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGG 840
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 CTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGG 900
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 CTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAAT 960
consensus_7607#1 -------------------GGCCGCTTTGGAACTTG----GAACATCGCAGCATTTTAA- 36
** *** *** ** ** **** * **
consensus_7607#0 GGTTTGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGG 1020
consensus_7607#1 -ATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGG 95
** *******************************************************
consensus_7607#0 GAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACA 1080
consensus_7607#1 GAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCA-TTACTGTGTACA 154
*********************************************** ************
consensus_7607#0 TGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGA 1140
consensus_7607#1 TGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGA-TATGGTCAG-AGTACGG-A 211
**************************************** ********* ******* *
consensus_7607#0 AAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATAC 1200
consensus_7607#1 AAGAAG--TCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATAC--CTCTACAAATAC 267
****** *********************************** ******* ****
consensus_7607#0 CAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAA 1260
consensus_7607#1 CAGGAAAGGT--GTCCAAG-TCAA------------------------------------ 288
********* ******* ****
consensus_7607#0 GTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAAC 1320
consensus_7607#1 ------------------------------------------------------------
consensus_7607#0 CAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA 1374
consensus_7607#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||