These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1216 fasta sequence [ACACGACTCCTCCGGTCCTCCCATCCTGACCCAACCGCTGCTGCTCCAGCATGCGCATCCTCCGGGGAATCCTCGCCGTCTCCGGCCACCTCGCCGGCCGCCGCGCGCCGGCGAACAACGCCCACCTGGCACTCTTCTCCCGCGCCCTCCAAATCCTCGCCCAGCAGGAGCCCGTCCGCCTCCAGAAGCTCTCGGCGCCCGACTCCGGGATCGTGGAGATGAGGCTGGAGCGGCCGGAGGCCAGGAACGCCATCGGGAGGGAGATGCTCCAGGGGTTGCGGAGCGCGATCGAGAAGGTGAAGGCTGACGCGACGGCGAAAGTCGTGCTGCTGGCGAGCTCCGTCCCGAAGGTTTTCTGCGCTGGCGCTGATCTCAAGGAAAGGAGGTTAATGAGCCCTTGCGAAGTTCGCGAATTTGTCAATTCCCTAAGATCTACATTCCTGTCCTTTGAGGCATTGTCAATTCCTACAATTGCCATTGTTGAGGGAGCTGCTTTTGGCGGTGGGTTAGAATTGGCTCTTTCTTGTGATCTCCGTATATGTGGGGAAAATGCAACATTTAGCTTGCCAGAAACTGGCCTTGCTATTATTCCTGGAGCTGGGGGAACGCAGCGTCTTCCTAGGATTGTTGGAAAGTCCAGAGCAAAGGAATTAATATTCACTGGTCGTAGATTCGATGCAGTAGAAGCTGTAACCATGGGAGTAGTAAACTACTGTGTTCCCGCTGGGGAGGCTTATAAAAGGGCTCTTGAACTTGCCCAGGAGATAAATCAGAAAGGTCCGTTAGCGATAAGAATGGCTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCTGTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCGTCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAACCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAGGGTTGAGCAGGTTATTTTTAGACTTTCTACTGTGTTCATATCTTTCTCCATACATGTAAGAAGAACAAGATACATCTGCCAATTCATGCTACATTTTATCAAGTTAATAAGGTTACACATGTTTTTTGCACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTACGTTGAC] [+] EMBL AK101814 [ACACGACTCCTCCGGTCCTCCCATCCTGACCCAACCGCTGCTGCTCCAGCATGCGCATCCTCCGGGGAATCCTCGCCGTCTCCGGCCACCTCGCCGGCCGCCGCGCGCCGGCGAACAACGCCCACCTGGCACTCTTCTCCCGCGCCCTCCAAATCCTCGCCCAGCAGGAGCCCGTCCGCCTCCAGAAGCTCTCGGCGCCCGACTCCGGGATCGTGGAGATGAGGCTGGAGCGGCCGGAGGCCAGGAACGCCATCGGGAGGGAGATGCTCCAGGGGTTGCGGAGCGCGATCGAGAAGGTGAAGGCTGACGCGACGGCGAAAGTCGTGCTGCTGGCGAGCTCCGTCCCGAAGGTTTTCTGCGCTGGCGCTGATCTCAAGGAAAGGAGGTTAATGAGCCCTTGCGAAGTTCGCGAATTTGTCAATTCCCTAAGATCTACATTCCTGTCCTTTGAGGCATTGTCAATTCCTACAATTGCCATTGTTGAGGGAGCTGCTTTTGGCGGTGGGTTAGAATTGGCTCTTTCTTGTGATCTCCGTATATGTGGGGAAAATGCAACATTTAGCTTGCCAGAAACTGGCCTTGCTATTATTCCTGGAGCTGGGGGAACGCAGCGTCTTCCTAGGATTGTTGGAAAGTCCAGAGCAAAGGAATTAATATTCACTGGTCGTAGATTCGATGCAGTAGAAGCTGTAACCATGGGAGTAGTAAACTACTGTGTTCCCGCTGGGGAGGCTTATAAAAGGGCTCTTGAACTTGCCCAGGAGATAAATCAGAAAGGTCCGTTAGCGATAAGAATGGCTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCTGTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCGTCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAACCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAGGGTTGAGCAGGTTATTTTTAGACTTTCTACTGTGTTCATATCTTTCTCCATACATGTAAGAAGAACAAGATACATCTGCCAATTCATGCTACATTTTATCAAGTTA ] [-] EMBL CF330746 [ aaAAATCAGAAAGGTCCGTTAGCGATAAGAATGGTTAAGAAGGCCATCAATCAAGGCATGGAGGTAGTTCTGTCCGCCGGATTGGCTGTCAAAAAAGAATGTTACGAGCAAGTTTTGCACACTCAAGATCGTCTTAAAGGTCTAGCTGCATTTGTTGAGAAAAGGAACCCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTTTCACATCCAGAAGGGTTGAGCAGGTTATTTTAAAACTTTCTACGGTGTTCATATCTTTCCCCATACATGTAAGAAGACCAAGATACATCTGCCAATTCATGCTACATTTTATCAAGTTAATAAGGTTACACATGTTTTTTGCACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTACGTTGAC] [+] EMBL CF330745 [ AGGTCCGTTAGCGATAAGAATGGCTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCTGTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCGTCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAACCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAGGGTTGAGCAGGTTATTTTTAGACTTTCTACTGTGTTCATATCTTTCTCCATACATGTAAGAAGAACAAGATACATCTGCCAATTCATGCTACATTNTATCAAGTTAATAAGGTTACACATGTTCTCTGC ] consensusID : consensus_7608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGCTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAACAGCATAAGCACACCATTTTGCTTGAGACATTTCAACAAAAATCAAACTAGTTCCACTATGATATGCTATTCAAGTACAATAGAACAGCATAACAGACTTTTCGATAGGTTGCAATTTCCCACTTTGATATGATACACGGGGTTGCTGCACTATAGCAAGAGAACTGTGAAAAAAAGGGAACAGGTTTGGCATATACTGGAGGGTAAATGACTAGATTTTTTTTGACGACAGGTAAATGACTAGATTCACAAGCCAAACAATACTCCCATGTTATTTAATAAAGTGCCAGCTACATTTATTATAATTACTTACAAAAGTAAAGCGCCATCTTGAACACATACGCAGGAATAATAGCAAGGCCAGTTTCTGGCAAGCTAAATGTTGCATTTTCCCCTGA] [+] EMBL CA762953 [TTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGCTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAACAGCATAAGCACACCATTTTGCTTGAGACATTTCAACAAAAATCAAACTAGTTCCACTATGATATGCTATTCAAGTACAATAGAACAGCATAACAGACTTTTCGATAGGTTGCAATTTCCCACTTTGATATGATACACGGGGTTGCTGCACTATAGCAAGAGAACTGTGAAAAAAAGGGAACAGGTTTGGCATATACTGGAGGGTAAATGACTAGATTTTTTTTGACGACAGGTAAATGACTAGATTCACAAGCCAAACAATACTCCCATGTTATTTAATAAAGTGCCAGCTACATTTATTATAATTACTTACAAAAGTAAAGCGCCATCTTGAACACATACGCAGGAATAATAGCAAGGCCAGTTTCTGGCAAGCTAAATGTTGCATTTTCCCCTGA] consensusID : consensus_7608#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [TTTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGTTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAATAGCAGTAGCAGGGTCCGACTTATTAAGAGGGATATGTATATATGTCCTCAATTCCTCATATACGTTAAGACTTACTAGATGGATGGTTGAAATGCTGGTTACTGGCTAGCTATGGTCAGTAAGTACAAGTGTACACACCAACTAATCAAAGTGTCCTTGTGCAGATGGTATTGATTGAAGAAGTTTGTTTGAATTATTGAGCATTTGAAATAAGTGCTATCCACCACGGCGTANATAACTTTTGTGTCAGTTATGGAACTAAAAGCATTGTAGCTATAGTATAGGAAAAAAATGGTGAATGCTTTGTAAGTACTTATGTCCCCTTGTCTC] [+] EMBL CA761246 [TTTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGTTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAATAGCAGTAGCAGGGTCCGACTTATTAAGAGGGATATGTATATATGTCCTCAATTCCTCATATACGTTAAGACTTACTAGATGGATGGTTGAAATGCTGGTTACTGGCTAGCTATGGTCAGTAAGTACAAGTGTACACACCAACTAATCAAAGTGTCCTTGTGCAGATGGTATTGATTGAAGAAGTTTGTTTGAATTATTGAGCATTTGAAATAAGTGCTATCCACCACGGCGTANATAACTTTTGTGTCAGTTATGGAACTAAAAGCATTGTAGCTATAGTATAGGAAAAAAATGGTGAATGCTTTGTAAGTACTTATGTCCCCTTGTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7608#1 ------------------------------------------------------------ consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 ACACGACTCCTCCGGTCCTCCCATCCTGACCCAACCGCTGCTGCTCCAGCATGCGCATCC 60 consensus_7608#1 ------------------------------------------------------------ consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 TCCGGGGAATCCTCGCCGTCTCCGGCCACCTCGCCGGCCGCCGCGCGCCGGCGAACAACG 120 consensus_7608#1 ------------------------------------------------------------ consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 CCCACCTGGCACTCTTCTCCCGCGCCCTCCAAATCCTCGCCCAGCAGGAGCCCGTCCGCC 180 consensus_7608#1 ------------------------------------------------------------ consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 TCCAGAAGCTCTCGGCGCCCGACTCCGGGATCGTGGAGATGAGGCTGGAGCGGCCGGAGG 240 consensus_7608#1 ------------------------------------------------------------ consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 CCAGGAACGCCATCGGGAGGGAGATGCTCCAGGGGTTGCGGAGCGCGATCGAGAAGGTGA 300 consensus_7608#1 ------------------------------------------------------------ consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 AGGCTGACGCGACGGCGAAAGTCGTGCTGCTGGCGAGCTCCGTCCCGAAGGTTTTCTGCG 360 consensus_7608#1 ------------------------------------------------------------ consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 CTGGCGCTGATCTCAAGGAAAGGAGGTTAATGAGCCCTTGCGAAGTTCGCGAATTTGTCA 420 consensus_7608#1 ------------------------------------------TTTTTTTTTTTGGCAAGG 18 consensus_7608#2 -----------------------------------------TTTTTTTTTTTTGGCAAGG 19 consensus_7608#0 ATTCCCTAAGATCTACATTCCTGTCCTTTGAGGCATTGTCAATTCCTACAATTGCCATTG 480 ** * *** ** * consensus_7608#1 TTGGTATG-----TTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTT 73 consensus_7608#2 TTGGTATG-----TTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTT 74 consensus_7608#0 TTGAGGGAGCTGCTTTTGGCGGTGGGTTAGAATTGGCTCTTTCTTGTGATCTCCGTATAT 540 *** *** ** **** * * ** *** * ** * * consensus_7608#1 AAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGA 133 consensus_7608#2 AAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGA 134 consensus_7608#0 GTGGGGAAAATGCAAC--ATTTAGCTTGCCAGAAACTGGCCTTGCTATTATTCCTGGAGC 598 *** * * ** ** * * * * ** * * **** ** * consensus_7608#1 TCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAA-GCTAG 192 consensus_7608#2 TCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAA-GCTAG 193 consensus_7608#0 TGGGGGAACGCAG-CGTCTTCCTAGGATTGTTGGAAAGTCCAGAGCAAAGGAATTAATAT 657 * ** ** * ** * *** ** ** * **** * * ** consensus_7608#1 TCCCTCAAAAAATATCGGATGGAG-AGAAACAAATGGATTGGCACCGCTG--TTTCAATC 249 consensus_7608#2 TCCCTCAAAAAATATCGGATGGAG-AGAAACAAATGGATTGGCACCGTTG--TTTCAATC 250 consensus_7608#0 TCACTGGTCGTAGATTCGATGCAGTAGAAGCTGTAACCATGGGAGTAGTAAACTACTGTG 717 ** ** * ** **** ** **** * *** * * * * * consensus_7608#1 TTTTTATCAACAAG--TTTGGAAGGGTTAACAGCATAAGCACACCATTTTGCTTGAGACA 307 consensus_7608#2 TTTTTATCAACAAG--TTTGGAAGGGTTAATAGCAGTAGCAGG-------GTCCGACTTA 301 consensus_7608#0 TTCCCGCTGGGGAGGCTTATAAAAGGGCTCTTGAACTTGCCCAGGAGATAAATCAGAAAG 777 ** ** ** ** ** * * ** consensus_7608#1 TTTCAACAAAAATCAAACTAGTTCCACTATGATATGCTATTCAAGTACAA---TAGAACA 364 consensus_7608#2 TTAAGAGGGATATGTATATATGTCCTCAAT-------TCCTCATATACGT---TAAGACT 351 consensus_7608#0 GTCCGTTAGCGATAAGAATGG--CTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCT 835 * ** * * * * * ** * consensus_7608#1 GCATAACAGACTTTTCGATAGGTTGCAATTTCCCACTTTGATATGATACACGGG-GTTGC 423 consensus_7608#2 ---TACTAGATGGATGGTTGAAATGCTGGTTACTGGCTAGCTATGGTCAGTAAGTACAAG 408 consensus_7608#0 GTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCG 895 ** * * consensus_7608#1 TGCACTATAGCAAGAGAACTGTGAAAAAAAGGGAACAGGTTTGGCATATACTGGAGGGTA 483 consensus_7608#2 TGTAC-ACACCAACTAATCAAAGTGTCCTTGTGCAGA----TGGTATTGATTGAAGAA-G 462 consensus_7608#0 TCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAA---CCTGTATACACAGGGAAATA 952 * * * * * * * * * ** * * consensus_7608#1 AATGACTAGATTTT-TTTTGACGACAGGTAAATGACTA----GATTCACAAGCCAAACAA 538 consensus_7608#2 TTTGTTTGAATTAT-TGAGCATTTGAAATAAGTG-CTA----TCCAC-CACGGCGTANAT 515 consensus_7608#0 AGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAG 1012 * ** * * * * * * * * * ** * * consensus_7608#1 TACTCC-CATGTTATTTAATAAAGTGCCAGCTACATTTATTATAATTACTTACAAAAGTA 597 consensus_7608#2 AACTTT-TGTGTCAGTTATGGAACTAAAAGC-------ATTGTAGCTA-TAGTATAGGAA 566 consensus_7608#0 GGTTGAGCAGGTTATTT-TTAGACTTTCTACTGTGTTCAT-ATCTTTCTCCATACATGTA 1070 * ** * ** * * * ** * * * * * * consensus_7608#1 AAGCGCCATCTTGAACACATACGCAGGAATAATAGCAAGGCCAGTTT--CTGGCAAGCTA 655 consensus_7608#2 AAAA---ATGGTGAATGCTTTGTAAGTACTTATGTCCC--CTTGTCT--C---------- 609 consensus_7608#0 AGAA---GAACAAGATACATCTGCCA-ATTCATGCTACATTTTATCAAGTTAATAAGGTT 1126 * * * * * * ** * consensus_7608#1 AATGTTGCATTTTCCCCTGA---------------------------------------- 675 consensus_7608#2 ------------------------------------------------------------ consensus_7608#0 ACACATGTTTTTTGCACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1186 consensus_7608#1 ------------------------------ consensus_7608#2 ------------------------------ consensus_7608#0 ATGTCATGCCGTTACGTAGCGTACGTTGAC 1216 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||