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Oryza sativa
cluster # 7611 cluster # 7611       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7611#0 length = 1606 sequences # 4  
consensus_7611#1 length = 335 sequences # 1  

consensusID : consensus_7611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1606
fasta sequence
                              [CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTACCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCCGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGTCACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGGCGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGTGCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGC-CTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGGCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCAGCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG-TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG-CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT-GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA]

[+] EMBL AK107370             [CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTACCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCCGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGTCACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGGCGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGTGCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGC CTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGGCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCAGCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAAC               ]
[+] EMBL C22453               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGCTTTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGNCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB000916             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCATGGCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGG                                                                                                                                                                                                                                                           ]
[+] EMBL C96934               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACATGCAGTGCAGCTGCCCCGACGCCGCAAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACGTTCGCC CCGGCNCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGGNCTTG GT TCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA]


>consensus_7611#0 CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGC GCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTA CCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGT CGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCT CGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGC CGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGT CACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGG CGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGT GCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGG CAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAAC CGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTC GTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGCCTCGCCGC CTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGG CGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCA GCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGA GCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCAC CGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTA CGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGA CTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACGTCGCCGCCGGCGCCGCCGGCGACATG CCGTTCCCGGCGCGCGCGGCACCGGCTGGTGTCGCTGCGCGACACGGCCTACTTCAACAG CCACGACACCAGCATGCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTG CTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGG CTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCA CTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATC GCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATG AATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTG TTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA



consensusID : consensus_7611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence
                              [ATGCGGCACGGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTACCCGACGGCGAAGCCANCGNACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGNGCGCGCCGGTNGCTGCGNCTCAACCCGGCGCGNCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCGAACTTCCTCCTCGGCGTCGCGTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGTNAACAACGGCATCCCGCAGTGGGTGT]

[+] EMBL C26818               [ATGCGGCACGGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTACCCGACGGCGAAGCCANCGNACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGNGCGCGCCGGTNGCTGCGNCTCAACCCGGCGCGNCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCGAACTTCCTCCTCGGCGTCGCGTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGTNAACAACGGCATCCCGCAGTGGGTGT]


>consensus_7611#1 ATGCGGCACGGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGA GCGTNANCGACTACCCGACGGCGAAGCCANCGNACGTGGGCGAACACCGACGCCGCGCTG CGCCACCACGTCGCCTACACCGACGGCTCCGTGGNGCGCGCCGGTNGCTGCGNCTCAACC CGGCGCGNCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGG CGCCGTGCGCGAACTTCCTCCTCGGCGTCGCGTCGTGTACTNCAACANCGGCGCCGGGAT CAACGCGGTNAACAACGGCATCCCGCAGTGGGTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7611#0      CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGC 60
consensus_7611#1      ----------------------------------------------ATGCGGCACG-GGC 13
                                                                    ********** ***

consensus_7611#0      GCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTA 120
consensus_7611#1      GCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTA 73
                      **********************************************        ******

consensus_7611#0      CCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGT 180
consensus_7611#1      CCCGACGGCGAAGCCANCGN--ACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGT 131
                      ***************  *    **************************************

consensus_7611#0      CGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCT 240
consensus_7611#1      CGCCTACACCGACGGCTCCGTGGNGCGCGCCG-GTNGCTGCGNCTCAACCCGGCGCGNCT 190
                      *********************** ******** *  ****** ************** **

consensus_7611#0      CGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGC 300
consensus_7611#1      CGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGC 250
                      ************************************************************

consensus_7611#0      CGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGT 360
consensus_7611#1      GAACTTCCTCCTCGGCGTCGC-GTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGT 309
                        ******************* ********** ***** ************** ******

consensus_7611#0      CACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGG 420
consensus_7611#1      NAACAACGGCATCCCGCAGTGGGTGT---------------------------------- 335
                       * ** *************  *****                                  

consensus_7611#0      CGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGT 480
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      GCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGG 540
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAAC 600
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTC 660
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      GTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGCCTCGCCGC 720
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGG 780
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCA 840
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      GCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGA 900
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      GCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCAC 960
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTA 1020
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGA 1080
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACGTCGCCGCCGGCGCCGCCGGCGACATG 1140
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CCGTTCCCGGCGCGCGCGGCACCGGCTGGTGTCGCTGCGCGACACGGCCTACTTCAACAG 1200
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CCACGACACCAGCATGCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTG 1260
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGG 1320
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCA 1380
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      CTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATC 1440
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      GCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATG 1500
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      AATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTG 1560
consensus_7611#1      ------------------------------------------------------------
                                                                                  

consensus_7611#0      TTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA 1606
consensus_7611#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)