These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 982 fasta sequence [TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTATTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCATCACCTTGCTGGCCTTGGAATTCTTCA] [+] EMBL CA762629 [TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTATTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATTAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAAATTTCTGAATCGGATAGGGCTCCAAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTG ] [+] EMBL CB630715 [ TACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGTACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAAAAAAAACTGATAAGGGATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTT ] [-] EMBL BI811663 [ ttttTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCAC CAATCTAGAAAAAACTGATAAGGGATTGGAATCCAGAAGCAGCGCAGACATGAAAAGGCCTG AA CAGATATGCAAA CTACGGGAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGGAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTG ] [+] EMBL CB633112 [ AAACAACGGTAATAATCTGGAACTAAAAATACAGAGAACAACGATAAACGTACAGTATAATTTTCCGTACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCATCACCTTGCTGGCCTTGGAATTCTTCA] consensusID : consensus_7619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTCCAGTATTTTCTTTTGGGACAGAACCACTGAACAATC] [+] EMBL CA760191 [TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTCCAGTATTTTCTTTTGGGACAGAACCACTGAACAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7619#0 TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTA 60 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 TTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGG 120 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAA 180 consensus_7619#1 ---TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAA 57 * **** ******* ******************************** consensus_7619#0 CAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACT 240 consensus_7619#1 CAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACT 117 ************************************************************ consensus_7619#0 CCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGA 300 consensus_7619#1 CCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGA 177 ***************************************************** ****** consensus_7619#0 AAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTC 360 consensus_7619#1 AAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTC 237 ************************************************************ consensus_7619#0 CGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCC 420 consensus_7619#1 CGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCC 297 ************************************************************ consensus_7619#0 CTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTT 480 consensus_7619#1 CTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTT 357 ************************************************************ consensus_7619#0 CTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAG 540 consensus_7619#1 CTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAG 417 ************************************************************ consensus_7619#0 AAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCT 600 consensus_7619#1 AAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCT 477 ************************************************************ consensus_7619#0 AGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATG 660 consensus_7619#1 AGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATG 537 ************************************************************ consensus_7619#0 GAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTC 720 consensus_7619#1 GAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTC 597 ************************************************************ consensus_7619#0 TTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGG--TCCGGTC 778 consensus_7619#1 TTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTC 657 *************************************************** ******* consensus_7619#0 CAGTATTTCTTTT--GGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAG 836 consensus_7619#1 CAGTATTTTCTTTTGGGACAGAACCACTGAA-CAATC----------------------- 693 ******** *** ***** ********* ***** consensus_7619#0 GTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGC 896 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCAT 956 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CACCTTGCTGGCCTTGGAATTCTTCA 982 consensus_7619#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||