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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 982 fasta sequence
[TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTATTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCATCACCTTGCTGGCCTTGGAATTCTTCA]
[+] EMBL CA762629 [TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTATTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATTAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAAATTTCTGAATCGGATAGGGCTCCAAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTG ]
[+] EMBL CB630715 [ TACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGTACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAAAAAAAACTGATAAGGGATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTT ]
[-] EMBL BI811663 [ ttttTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCAC CAATCTAGAAAAAACTGATAAGGGATTGGAATCCAGAAGCAGCGCAGACATGAAAAGGCCTG AA CAGATATGCAAA CTACGGGAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGGAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTG ]
[+] EMBL CB633112 [ AAACAACGGTAATAATCTGGAACTAAAAATACAGAGAACAACGATAAACGTACAGTATAATTTTCCGTACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCATCACCTTGCTGGCCTTGGAATTCTTCA]
consensusID : consensus_7619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTCCAGTATTTTCTTTTGGGACAGAACCACTGAACAATC]
[+] EMBL CA760191 [TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTCCAGTATTTTCTTTTGGGACAGAACCACTGAACAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7619#0 TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTA 60
consensus_7619#1 ------------------------------------------------------------
consensus_7619#0 TTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGG 120
consensus_7619#1 ------------------------------------------------------------
consensus_7619#0 CAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAA 180
consensus_7619#1 ---TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAA 57
* **** ******* ********************************
consensus_7619#0 CAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACT 240
consensus_7619#1 CAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACT 117
************************************************************
consensus_7619#0 CCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGA 300
consensus_7619#1 CCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGA 177
***************************************************** ******
consensus_7619#0 AAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTC 360
consensus_7619#1 AAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTC 237
************************************************************
consensus_7619#0 CGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCC 420
consensus_7619#1 CGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCC 297
************************************************************
consensus_7619#0 CTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTT 480
consensus_7619#1 CTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTT 357
************************************************************
consensus_7619#0 CTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAG 540
consensus_7619#1 CTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAG 417
************************************************************
consensus_7619#0 AAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCT 600
consensus_7619#1 AAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCT 477
************************************************************
consensus_7619#0 AGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATG 660
consensus_7619#1 AGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATG 537
************************************************************
consensus_7619#0 GAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTC 720
consensus_7619#1 GAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTC 597
************************************************************
consensus_7619#0 TTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGG--TCCGGTC 778
consensus_7619#1 TTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTC 657
*************************************************** *******
consensus_7619#0 CAGTATTTCTTTT--GGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAG 836
consensus_7619#1 CAGTATTTTCTTTTGGGACAGAACCACTGAA-CAATC----------------------- 693
******** *** ***** ********* *****
consensus_7619#0 GTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGC 896
consensus_7619#1 ------------------------------------------------------------
consensus_7619#0 CTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCAT 956
consensus_7619#1 ------------------------------------------------------------
consensus_7619#0 CACCTTGCTGGCCTTGGAATTCTTCA 982
consensus_7619#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||