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Oryza sativa
cluster # 7619 cluster # 7619       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7619#0 length = 982 sequences # 4  
consensus_7619#1 length = 693 sequences # 1  

consensusID : consensus_7619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 982
fasta sequence
                              [TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTATTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCATCACCTTGCTGGCCTTGGAATTCTTCA]

[+] EMBL CA762629             [TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTATTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATTAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAAATTTCTGAATCGGATAGGGCTCCAAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTG                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB630715             [                                                                                                                TACACTGGCAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGTACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAAAAAAAACTGATAAGGGATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTT                                                                                   ]
[-] EMBL BI811663             [                                                                                                                                         ttttTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCAC   CAATCTAGAAAAAACTGATAAGGGATTGGAATCCAGAAGCAGCGCAGACATGAAAAGGCCTG AA CAGATATGCAAA CTACGGGAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGGAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTG                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB633112             [                                                                                                                                              AAACAACGGTAATAATCTGGAACTAAAAATACAGAGAACAACGATAAACGTACAGTATAATTTTCCGTACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCAGTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCATCACCTTGCTGGCCTTGGAATTCTTCA]


>consensus_7619#0 TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTA TTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGG CAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAA CAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACT CCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGA AAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTC CGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCC CTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTT CTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAG AAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCT AGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATG GAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTC TTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGTCCGGTCCA GTATTTCTTTTGGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAGGTAA ATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGCCTTT TACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCATCACC TTGCTGGCCTTGGAATTCTTCA



consensusID : consensus_7619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTCCAGTATTTTCTTTTGGGACAGAACCACTGAACAATC]

[+] EMBL CA760191             [TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAACAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTCCAGTATTTTCTTTTGGGACAGAACCACTGAACAATC]


>consensus_7619#1 TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAACAA CGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACTCCA CCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGAAAA GCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTCCGA ATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCCCTT CACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTTCTT TTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAGAAG AGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCTAGG TAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATGGAA TATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTCTTC AGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTCCAG TATTTTCTTTTGGGACAGAACCACTGAACAATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7619#0      TTTTTTTTTTTTTTTATACCGCCTCAAATAAGTTATCAAATTCCATGCTAGATTAACTTA 60
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      TTTTGGAACAGAGGTAATTAGCAAGCACAAGGGAAAATGGGCTGAACATAAATACACTGG 120
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      CAAACGGCCATGAGATTGATGTAAACAATAGGATTAATCTGGAACTAAAAATACAGAGAA 180
consensus_7619#1      ---TTTTTTTTTTTTTTGAGGTAAACAGTAGGATTAATCTGGAACTAAAAATACAGAGAA 57
                                *    **** ******* ********************************

consensus_7619#0      CAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACT 240
consensus_7619#1      CAACGATAAATGGACAGTATAATTTTCCGAACTACTATCCTTTCCCGTTTTACATGAACT 117
                      ************************************************************

consensus_7619#0      CCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAGACATGA 300
consensus_7619#1      CCACCCACACTCTAGAAAAAACTGATAAGGCATTGGAATCCAGAAGCAGCGCAAACATGA 177
                      ***************************************************** ******

consensus_7619#0      AAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTC 360
consensus_7619#1      AAAGCCCTGCAACCAGATATGCAAACCTACGGCAGCAGATTTCTGAATCGGATAGGGCTC 237
                      ************************************************************

consensus_7619#0      CGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCC 420
consensus_7619#1      CGAATTGATTTCAACCATGCAAAGCACCTTAAAGTCTACAAAAATATCGCATTGATTCCC 297
                      ************************************************************

consensus_7619#0      CTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTT 480
consensus_7619#1      CTTCACCATGAGATGCAACTGGGTTCCATCTTGGCAGGAGACATCGGATGATCGCCATTT 357
                      ************************************************************

consensus_7619#0      CTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAG 540
consensus_7619#1      CTTTTATAGAACCTCCAAAACTGCAGGCAAAACTAATACAACTTCAAGAGTACTGTATAG 417
                      ************************************************************

consensus_7619#0      AAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCT 600
consensus_7619#1      AAGAGGCTAACAGTCAACTGATTGTATGTGATCTTCAGTTTCATCCTTGAGACATTCGCT 477
                      ************************************************************

consensus_7619#0      AGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATG 660
consensus_7619#1      AGGTAGCTGAAAACTTAAACAGAACATAGCCTTGTTAGGTGCAACATCACGAACCCTATG 537
                      ************************************************************

consensus_7619#0      GAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTC 720
consensus_7619#1      GAATATGGGCTCTGCTATCTTCGCATTCAATTTATTTTGTGCTTCGGATAATATCAATTC 597
                      ************************************************************

consensus_7619#0      TTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGG--TCCGGTC 778
consensus_7619#1      TTCAGATTCACTTGAACGGATGAAACAATAACAGTGGATCCAAGGTAATGGGGTCCGGTC 657
                      ***************************************************  *******

consensus_7619#0      CAGTATTTCTTTT--GGACAAGACCACTGAAACAATCAAGAAACTGCAGAGCAGAAGCAG 836
consensus_7619#1      CAGTATTTTCTTTTGGGACAGAACCACTGAA-CAATC----------------------- 693
                      ********  ***  *****  ********* *****                       

consensus_7619#0      GTAAATTCATTACGACATGGTCAAAGTGTTCCCATGGCTTGACAGGTGGTGGTCCTGAGC 896
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      CTTTTACTCTTTTGCTGTTCCTCTTCTTTGTATGACTAGCATCTTCTTGGCAGTACCCAT 956
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      CACCTTGCTGGCCTTGGAATTCTTCA 982
consensus_7619#1      --------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)