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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1634 fasta sequence
[GCGCCCCAAATTCCGCCTCCTCTTCTTCACTAGCTCTTCCACCCTCTCCAATCCCCTCTCCCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGGGGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGCCCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGACGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGAGGGATTCCACTGATGACTTGTGCTTGACCGTCATCAAGAAGAAGGTG-GCGTTTGATCCCAACGTCACCACTTACGAGGCGGCTGCGATCCCGGAGGCGGAGGAGGAGGATGATGAGGAGGCCGAGCCGGCGGCGGGTGACGACAAGGATGAGGCGAGGTGGATGCTGGCACCGGATTGCGCGAAATCCGAGGCTTTCCCGCTGAACCACAGGTACAGCAACTGCGCCTACGGCGACAATGACAGCGAGTACGACGAGGACGAGGACGAGGACGAGGAGGAAGACGAGGACGAAGAGGAAGAGGCGGATGGGCTCGACGAGTGCGCGATCGACGACGAGGACGACGACGGCCTTCTCGGCATCGGGCGCGGCGAGGACGAGGCGTGCGAGTCGCTCTTCCTGCTTCCAATGAGCAAGACTAAGGAGAGCGGCGGCGGCCATGAAGCGGCTTCCGGCGTCACCTCGCCGGAGGCGCCGCCCGCGCCTCAACAGACGCGCGACGCGAATCCGGTGCTCAGCTCGGTGGAGAATCTCACCCAGTGGAAGGACGCCAAGGCCCGCGCCGCCACCGCCACCGCCGCGCCGAATGCTTCGGACAAGGAGAACAGAACGACGGCGAACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTGCTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTCGACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGATCAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTCTGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACTTACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK102410 [GCGCCCCAAATTCCGCCTCCTCTTCTTCACTAGCTCTTCCACCCTCTCCAATCCCCTCTCCCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGGGGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGCCCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGACGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGAGGGATTCCACTGATGACTTGTGCTTGACCGTCATCAAGAAGAAGGTG GCGTTTGATCCCAACGTCACCACTTACGAGGCGGCTGCGATCCCGGAGGCGGAGGAGGAGGATGATGAGGAGGCCGAGCCGGCGGCGGGTGACGACAAGGATGAGGCGAGGTGGATGCTGGCACCGGATTGCGCGAAATCCGAGGCTTTCCCGCTGAACCACAGGTACAGCAACTGCGCCTACGGCGACAATGACAGCGAGTACGACGAGGACGAGGACGAGGACGAGGAGGAAGACGAGGACGAAGAGGAAGAGGCGGATGGGCTCGACGAGTGCGCGATCGACGACGAGGACGACGACGGCCTTCTCGGCATCGGGCGCGGCGAGGACGAGGCGTGCGAGTCGCTCTTCCTGCTTCCAATGAGCAAGACTAAGGAGAGCGGCGGCGGCCATGAAGCGGCTTCCGGCGTCACCTCGCCGGAGGCGCCGCCCGCGCCTCAACAGACGCGCGACGCGAATCCGGTGCTCAGCTCGGTGGAGAATCTCACCCAGTGGAAGGACGCCAAGGCCCGCGCCGCCACCGCCACCGCCGCGCCGAATGCTTCGGACAAGGAGAACAGAACGACGGCGAACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTGCTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTCGACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGATCAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTCTGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACTTACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTT ]
[+] EMBL C74516 [ CCTCTCCAATNCCCTCTCCCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGGGGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGCCCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGACGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGANGGATT CACTGATGANTTGTGCTTGAACGTAATCAAGAAG AGGTGAACGTTTAAT CCAACGTAAC ]
[+] EMBL AU173207 [ ACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTGCTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTCGACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGATCAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTCTGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTG ]
[+] EMBL AU094809 [ GAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACNTCAAGATATCCTNTGCCAACTCGTNTCCGAGGAGGTCGAGGTNTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCNTGGGGGCTTACTGGAATTGCAGCNCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGNGGACTAGAACAAGGTTTGGGCAGAACTTTGCNGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATNTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[ATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAANAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAANATGTTGCTTGTCAAATTNTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTATGCCTTTNTNAAAAAAAAAAAAA]
[+] EMBL AU173208 [ATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAANAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAANATGTTGCTTGTCAAATTNTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTATGCCTTTNTNAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7622#0 GCGCCCCAAATTCCGCCTCCTCTTCTTCACTAGCTCTTCCACCCTCTCCAATCCCCTCTC 60
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGG 120
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGC 180
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGA 240
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGAGGGATTCCACTGA 300
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 TGACTTGTGCTTGACCGTCATCAAGAAGAAGGTGGCGTTTGATCCCAACGTCACCACTTA 360
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CGAGGCGGCTGCGATCCCGGAGGCGGAGGAGGAGGATGATGAGGAGGCCGAGCCGGCGGC 420
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GGGTGACGACAAGGATGAGGCGAGGTGGATGCTGGCACCGGATTGCGCGAAATCCGAGGC 480
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 TTTCCCGCTGAACCACAGGTACAGCAACTGCGCCTACGGCGACAATGACAGCGAGTACGA 540
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CGAGGACGAGGACGAGGACGAGGAGGAAGACGAGGACGAAGAGGAAGAGGCGGATGGGCT 600
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CGACGAGTGCGCGATCGACGACGAGGACGACGACGGCCTTCTCGGCATCGGGCGCGGCGA 660
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GGACGAGGCGTGCGAGTCGCTCTTCCTGCTTCCAATGAGCAAGACTAAGGAGAGCGGCGG 720
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CGGCCATGAAGCGGCTTCCGGCGTCACCTCGCCGGAGGCGCCGCCCGCGCCTCAACAGAC 780
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GCGCGACGCGAATCCGGTGCTCAGCTCGGTGGAGAATCTCACCCAGTGGAAGGACGCCAA 840
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GGCCCGCGCCGCCACCGCCACCGCCGCGCCGAATGCTTCGGACAAGGAGAACAGAACGAC 900
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GGCGAACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTG 960
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTC 1020
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGAT 1080
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 CAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTC 1140
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 TGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCAT 1200
consensus_7622#1 ----------------------------------------------------------AT 2
**
consensus_7622#0 CCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAG 1260
consensus_7622#1 CCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAG 62
************************************************************
consensus_7622#0 AGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGA 1320
consensus_7622#1 AGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGA 122
************************************************************
consensus_7622#0 ATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTG 1380
consensus_7622#1 ATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAANAGTTTGGTTTCAGGAGGAAAATTG 182
*********************************** ************************
consensus_7622#0 CAGAAGATGCATACATGCTTTTGTGAGAAGAACTTACATATAGAGTCAGTGAGATTGTGG 1440
consensus_7622#1 CAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGG 242
********************************* **************************
consensus_7622#0 AAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAAC 1500
consensus_7622#1 AAGTAGTGGCATGCTTTATTCAAANATGTTGCTTGTCAAATTNTTTTATTTGTTGTAAAC 302
************************ ***************** *****************
consensus_7622#0 AATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTT----GGCGCTGTCGATATG 1556
consensus_7622#1 AATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTTTTTGGCGCTGTCGATATG 362
***************************************** ***************
consensus_7622#0 GTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTAAAAAAAAAAAAAAA 1616
consensus_7622#1 GTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTATGCCTTTNTNAAAA 422
********************************************** ****
consensus_7622#0 AAAAAAAAAAAAAAAAAA 1634
consensus_7622#1 AAAAAAAAA--------- 431
*********
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||