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Oryza sativa
cluster # 7623 cluster # 7623       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7623#0 length = 2663 sequences # 5  

consensusID : consensus_7623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2663
fasta sequence
                              [GATCGACGGCGACGCCGCCCTCTCCATCTCCAGAGAGAGCCCTCTTCTCCGTTTCTTCCTACTAGGCTACTACTACTCCTCCTCGGCTCAACCCTCCCGTCCCCTCACCCCCACGCGCGCCGCCTTCTCCCCAGAACGCGCCGCGGCGAAGCGCCGCCGAAGCAGCCCCCACTCCTCCGCGCGCGGCGGCGGCGGCGCAGTCTCCAGACGCTTCCTCCTCCGGGGATCTCGCCTTTGAATGGACCGAAGTGATTCCATGGCTGATTCGCCAAGGAGGCGTAATGGCCTTCTGCGGGACCAGGTCCAGTTGGTGAAAAGGAAGGACACAAATCGCTACGAAATCGTCCGCTTTCCTGATCCATTGTCATTTGAGAAAGGCTTCTTTGTTATGATCCGTGCCTGCCAGCTTCTGGTGCAGCACAATGAAGGGATGATTTTTGTTGGCGTTGCTGGACCCTCTGGGGCCGGGAAGACTGTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGATCCACGCCTAACAGACTACGACACACTGTTGGAAAATATTCATGGTCTGAAGGAGGGAAGATCAGTTCAGGTTCCAATATATGATTTCAAGATGAGCTGCCGGACTGGATACAGAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACTGGTGGTGTTCATTTTGACCTGGTGAAGAGGGTCCTGAGGGACATACAGAGAGCTGGCCAGGAGCCTGAGGAAATAATTCATCAGATATCTGAAACGGTTTATCCGATGTATAAGGCTTTCATTGAGCCAGACTTGCAGACAGCACATATAAAAATAATCAACAAGTTCAACCCATTCTCAGGGTTCCAAAATCCTATGTACATTCTAAAGTCTCCACGAACTATAACACCTACTGACATCAAAGTTGCTCTTGGTGAAGATCATACAGAAAGCATTGAAGAAACTTATGATATATATTTGCTTCCTCCAGGCGAAGATCCAGAATCATGCCAATCTTATTTGAGAATGAGGAATAGGGAAGGGAAATATAATCTGATGTTTGAGGAGTGGGTGACCGATAATCCTTTTATCATATCACCAAGGATTACGTTTGAAGTCAGTGTTCGTCTTCTTGGAGGTTTGATGGCATTGGGATATACTATAGCAGCTATACTGAAGAGAAAGAGTCGTGTGTTTTCTGATGGCAAGGCAACTGTTAAAATTGATTGGTTGGAGCAACTTAACCGAAATTATATACAGGTGCAAGGAAGAGATAGAAATCATGTCAAATTTGTAGCGGAGAAGTTAGGTCTGGATGGCTCTTATATTCCACGCACATATATTGAACAAATTCAGCTGGAGAAACTGATAAACGATGTTATGGCATTACCAGAAGATCTCAAGACAAAGCTCAGCATTGATGATGAGCTGGTTTCAAGTCCAAAAGAGGCCCTTTCTCGGGTTTCTGCTGATAAGAGAAACAAACACCTGAAAAGTGGTCTATCTCATTCATATTCAACTCATGGAGATAAAAATATTGTGAAATTGAGTAAATTGACAGAAACCAACAGAAGGTTTGGAAGTGGGCGAGCCCCTGAACCTCCTGCAATTAATCAGGGTGCTATCACTCAGCTATCCGAACAGATTTCAACGTTGAATGAGAGGATGGACGAGTTCACCTCTCGAGTTGAAGAACTCAACTGTAAATTTGCAATAAAGAAATCATCGACCAGTCAGCAAAATTTAGCTCTTCCAAATGAAACTTGCAATGGTTCTGCACCTACAAATCTCTTTGTTTCTCATTTGGGCAATGGTACCCTGATACCTCATTCGTCATCATCGAACCAACTTTTGAAGGAGTCCCCCATTGTGGATGAGATTAATGCCATATCAAGAGGTCAGCGCCAAGTGATACATCAGCTTGACAATCTGACCAGCTTGCTTCATGAGCATTTGGCCTTGACCCGCCAAGGAAATGCAGTCCGCAGAAACGGGATCCTGGAAATGGACATGTCCATCTGCCCACTCATTGCCCTGACAATTGGCGGTTTCGGCTATTTGGTGTTCAAGAGCCTCAACCGGAGCTAACCGAAGCGAATCAGGCAGCGACATGCTGCTTTAAAAAGCTCACCACCAAGTTCAACCAAGAACCAGAGAAAGCCAAGAAGTCTCAAAACGGATCTTCATTCTTCAGTACTCAGTCCAGACACCAAACCGATGTTCTCCTGCGAGCTATAGACGGTCCTCACTCAGATCATTGGTCTCATGGGGACCATATCTGATAGATTTTACAATTTCAAGATAGATAAACTCATATACCAGCACAAGCAACAGAGCAGTCTTGATACTCGGGCCAAGTTACTTGGAAGCTTAAAAACTGTGTACTAAAGAGCGTAGAGTTATACAATATCGTCTGTAATGGATACTGGAAAGCCCCCAGTATCA-ATAAATTTTGGAGACGCTAGTAATCCCGATATAATGTCGAACAAGTCGTGGGAAAAGAGCA-TAGTCATTTTACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK102236             [GATCGACGGCGACGCCGCCCTCTCCATCTCCAGAGAGAGCCCTCTTCTCCGTTTCTTCCTACTAGGCTACTACTACTCCTCCTCGGCTCAACCCTCCCGTCCCCTCACCCCCACGCGCGCCGCCTTCTCCCCAGAACGCGCCGCGGCGAAGCGCCGCCGAAGCAGCCCCCACTCCTCCGCGCGCGGCGGCGGCGGCGCAGTCTCCAGACGCTTCCTCCTCCGGGGATCTCGCCTTTGAATGGACCGAAGTGATTCCATGGCTGATTCGCCAAGGAGGCGTAATGGCCTTCTGCGGGACCAGGTCCAGTTGGTGAAAAGGAAGGACACAAATCGCTACGAAATCGTCCGCTTTCCTGATCCATTGTCATTTGAGAAAGGCTTCTTTGTTATGATCCGTGCCTGCCAGCTTCTGGTGCAGCACAATGAAGGGATGATTTTTGTTGGCGTTGCTGGACCCTCTGGGGCCGGGAAGACTGTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGATCCACGCCTAACAGACTACGACACACTGTTGGAAAATATTCATGGTCTGAAGGAGGGAAGATCAGTTCAGGTTCCAATATATGATTTCAAGATGAGCTGCCGGACTGGATACAGAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACTGGTGGTGTTCATTTTGACCTGGTGAAGAGGGTCCTGAGGGACATACAGAGAGCTGGCCAGGAGCCTGAGGAAATAATTCATCAGATATCTGAAACGGTTTATCCGATGTATAAGGCTTTCATTGAGCCAGACTTGCAGACAGCACATATAAAAATAATCAACAAGTTCAACCCATTCTCAGGGTTCCAAAATCCTATGTACATTCTAAAGTCTCCACGAACTATAACACCTACTGACATCAAAGTTGCTCTTGGTGAAGATCATACAGAAAGCATTGAAGAAACTTATGATATATATTTGCTTCCTCCAGGCGAAGATCCAGAATCATGCCAATCTTATTTGAGAATGAGGAATAGGGAAGGGAAATATAATCTGATGTTTGAGGAGTGGGTGACCGATAATCCTTTTATCATATCACCAAGGATTACGTTTGAAGTCAGTGTTCGTCTTCTTGGAGGTTTGATGGCATTGGGATATACTATAGCAGCTATACTGAAGAGAAAGAGTCGTGTGTTTTCTGATGGCAAGGCAACTGTTAAAATTGATTGGTTGGAGCAACTTAACCGAAATTATATACAGGTGCAAGGAAGAGATAGAAATCATGTCAAATTTGTAGCGGAGAAGTTAGGTCTGGATGGCTCTTATATTCCACGCACATATATTGAACAAATTCAGCTGGAGAAACTGATAAACGATGTTATGGCATTACCAGAAGATCTCAAGACAAAGCTCAGCATTGATGATGAGCTGGTTTCAAGTCCAAAAGAGGCCCTTTCTCGGGTTTCTGCTGATAAGAGAAACAAACACCTGAAAAGTGGTCTATCTCATTCATATTCAACTCATGGAGATAAAAATATTGTGAAATTGAGTAAATTGACAGAAACCAACAGAAGGTTTGGAAGTGGGCGAGCCCCTGAACCTCCTGCAATTAATCAGGGTGCTATCACTCAGCTATCCGAACAGATTTCAACGTTGAATGAGAGGATGGACGAGTTCACCTCTCGAGTTGAAGAACTCAACTGTAAATTTGCAATAAAGAAATCATCGACCAGTCAGCAAAATTTAGCTCTTCCAAATGAAACTTGCAATGGTTCTGCACCTACAAATCTCTTTGTTTCTCATTTGGGCAATGGTACCCTGATACCTCATTCGTCATCATCGAACCAACTTTTGAAGGAGTCCCCCATTGTGGATGAGATTAATGCCATATCAAGAGGTCAGCGCCAAGTGATACATCAGCTTGACAATCTGACCAGCTTGCTTCATGAGCATTTGGCCTTGACCCGCCAAGGAAATGCAGTCCGCAGAAACGGGATCCTGGAAATGGACATGTCCATCTGCCCACTCATTGCCCTGACAATTGGCGGTTTCGGCTATTTGGTGTTCAAGAGCCTCAACCGGAGCTAACCGAAGCGAATCAGGCAGCGACATGCTGCTTTAAAAAGCTCACCACCAAGTTCAACCAAGAACCAGAGAAAGCCAAGAAGTCTCAAAACGGATCTTCACTCTTCAGTACTCAGTCCAGACACCAAACCGATGTTCTCCTGCGAGCTATAGACGGTCCTCACTCAGATCATTGGTCTCATGGGGACCATATCTGATAGATTTTACAATTTCAAGATAGATAAACTCATATACCAGCACAAGCAACAGAGCAGTCTTGATACTCGGGCCAAGTTACTTGGAAGCTTAAAAACTGTGTACTAAAGAGCGTAGAGTTATACAATATCGTCTGTAATGGATACTGGAAAGCCCCCAGTATCA ATAAATTTTGGAGACGCTAGTAATCCCGATATAATGTCGAACAAGTCGTGGGAAAAGAGCA TAGT                                            ]
[+] EMBL OSR31271A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GACAGCACATATAAAAATAATCAACAAGTTCAACCCATTCTCAGGGTTCCAAAATCCTATGTACATTCTAAAGTCTCCACGAACTATAACACCTACTGACATCAAAGTTGCTCTTGGTGAAGATCATACAGAAAGCATTGAAGAAACTTATGATATATATTTGCTTCCTCCAGGCGAAGATCCAGAATCATGCCAATCTTATTTGAGAATGAGGAATAGGGAAGGGAAATATAATCTGATGTTTGAGGAGTGGGTGACCGATAATCCTTTTATCATATCACCAAGGATTACGTTTGAAGTCAGTGTTCGTCTTCTTGGAGGTTTGATGGCATTGGGATATACTATAGCAGCTATACTGAGGAGAAAGAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB673473             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTGGATGAGATTAATGCCATATCAAGAGGTCAGCGCCAAGTGATACATCAGCTTGACAATTTGACCAGCTTGCTTCATGAGCATTTGGCCTTGCCCCGCCAAGGAAATGCAGTCCGCCGAAACGGGATCCTGGAAATGGACATGTCCATTTGCCCCCTCATTGCCCTGACAATTGGCGGTTTCGGCTATTTGGTGTTCAAGAGCCTCAACCGGAGCTAACCGAAGGGAATCAGGCAGCGACATGCTGCTTTAAAAAGCTCACCCCCAAGTTCAACCCAGAACCAGAGAAAGCCAAGAAGTCTCAAAACGGATCTTCATTTTTCAGTACTCAGTCCAGACCCCAAACCGATGTTTTCCTGCGAGCTATAGCCGGTCCTCACTCAGATCATTGGTCTCATGGGGCCCATATTTGATAGATTTTACAATTTCAAGATAGATAAACTCATATACCAGCACAAGCAACAGAGCAGTCTTGATACTCGGGCCAAGTTACTTGGAAGCTTAAAAACTGTGTACTAAAGAGCGTAGAGTTATACAATATCGTTTGTAATGGATACTGGAAAGCCCCCAGTATCA ATAAATTTTGGAGACGCTAGTAATCCCGATATAATGTCGACCAAGTCGTGGGAAAAAAGCATTAGTCA                                          ]
[+] EMBL AU173439             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAAGCGAATCAGGCAGCGACATGCTGCTTTAAAAAGCTCNCCACCAAGTTCAACCAAGAACCAGAGAAAGCCAAGAAGTCTCAAAACGGATCTTCATTNTTCAGTACTCAGTCCAGACACCAAACCGATGTTCTCCTGCGAGCTATAGACGGTCCTCACTCAGATCATTGGTCTCATGGGGNCCATATNTGATAGATTTTACAATTTCAAGATAGATAAACTCATATACCAGCACAAGCAACAGAGCAGTNTTGATACTCGGGCCAAGTTACTTGGAAGCTTAAAAACTGTGTACTAAAGAGCGTAGAGTTATACAATATCGTCTGTAATGGATACTGGAAAGCCCCCAGTATCA ATAAATTTTGGAGACGCTAGTAATCCCGATATAATGTCGAACAAGTCGTGGGAAAAGAGCA TAGTCATTTTACTGGAAAAA                            ]
[+] EMBL CF329880             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGATAGATTTTACAATTTCAAGATAGATAAACTCATATACCAGCACAAGCAACAGAGCAGTCTTGATACTCGGGCCAAGTTACTTGGAAGCTTAAAAACTGTGTACTAAAGAGCGNAGTGNTATACAATATCGTCTGTAATGGATACTGGAAAGCCCCCTTTATCATATAAATTTTGGAGACGCTAGTAATCCCGATATAATGTCGAACAAGTCGTGGGAAAAGAGCA TAGTCATTTTACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_7623#0 GATCGACGGCGACGCCGCCCTCTCCATCTCCAGAGAGAGCCCTCTTCTCCGTTTCTTCCT ACTAGGCTACTACTACTCCTCCTCGGCTCAACCCTCCCGTCCCCTCACCCCCACGCGCGC CGCCTTCTCCCCAGAACGCGCCGCGGCGAAGCGCCGCCGAAGCAGCCCCCACTCCTCCGC GCGCGGCGGCGGCGGCGCAGTCTCCAGACGCTTCCTCCTCCGGGGATCTCGCCTTTGAAT GGACCGAAGTGATTCCATGGCTGATTCGCCAAGGAGGCGTAATGGCCTTCTGCGGGACCA GGTCCAGTTGGTGAAAAGGAAGGACACAAATCGCTACGAAATCGTCCGCTTTCCTGATCC ATTGTCATTTGAGAAAGGCTTCTTTGTTATGATCCGTGCCTGCCAGCTTCTGGTGCAGCA CAATGAAGGGATGATTTTTGTTGGCGTTGCTGGACCCTCTGGGGCCGGGAAGACTGTGTT TACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAA TGATGCAAGTCGCATAGTTGATGGCAATTTTGATGATCCACGCCTAACAGACTACGACAC ACTGTTGGAAAATATTCATGGTCTGAAGGAGGGAAGATCAGTTCAGGTTCCAATATATGA TTTCAAGATGAGCTGCCGGACTGGATACAGAACAGTTGATGTCCCTAGCTCTAGGATTGT TATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGT TTCTGTCACTGGTGGTGTTCATTTTGACCTGGTGAAGAGGGTCCTGAGGGACATACAGAG AGCTGGCCAGGAGCCTGAGGAAATAATTCATCAGATATCTGAAACGGTTTATCCGATGTA TAAGGCTTTCATTGAGCCAGACTTGCAGACAGCACATATAAAAATAATCAACAAGTTCAA CCCATTCTCAGGGTTCCAAAATCCTATGTACATTCTAAAGTCTCCACGAACTATAACACC TACTGACATCAAAGTTGCTCTTGGTGAAGATCATACAGAAAGCATTGAAGAAACTTATGA TATATATTTGCTTCCTCCAGGCGAAGATCCAGAATCATGCCAATCTTATTTGAGAATGAG GAATAGGGAAGGGAAATATAATCTGATGTTTGAGGAGTGGGTGACCGATAATCCTTTTAT CATATCACCAAGGATTACGTTTGAAGTCAGTGTTCGTCTTCTTGGAGGTTTGATGGCATT GGGATATACTATAGCAGCTATACTGAAGAGAAAGAGTCGTGTGTTTTCTGATGGCAAGGC AACTGTTAAAATTGATTGGTTGGAGCAACTTAACCGAAATTATATACAGGTGCAAGGAAG AGATAGAAATCATGTCAAATTTGTAGCGGAGAAGTTAGGTCTGGATGGCTCTTATATTCC ACGCACATATATTGAACAAATTCAGCTGGAGAAACTGATAAACGATGTTATGGCATTACC AGAAGATCTCAAGACAAAGCTCAGCATTGATGATGAGCTGGTTTCAAGTCCAAAAGAGGC CCTTTCTCGGGTTTCTGCTGATAAGAGAAACAAACACCTGAAAAGTGGTCTATCTCATTC ATATTCAACTCATGGAGATAAAAATATTGTGAAATTGAGTAAATTGACAGAAACCAACAG AAGGTTTGGAAGTGGGCGAGCCCCTGAACCTCCTGCAATTAATCAGGGTGCTATCACTCA GCTATCCGAACAGATTTCAACGTTGAATGAGAGGATGGACGAGTTCACCTCTCGAGTTGA AGAACTCAACTGTAAATTTGCAATAAAGAAATCATCGACCAGTCAGCAAAATTTAGCTCT TCCAAATGAAACTTGCAATGGTTCTGCACCTACAAATCTCTTTGTTTCTCATTTGGGCAA TGGTACCCTGATACCTCATTCGTCATCATCGAACCAACTTTTGAAGGAGTCCCCCATTGT GGATGAGATTAATGCCATATCAAGAGGTCAGCGCCAAGTGATACATCAGCTTGACAATCT GACCAGCTTGCTTCATGAGCATTTGGCCTTGACCCGCCAAGGAAATGCAGTCCGCAGAAA CGGGATCCTGGAAATGGACATGTCCATCTGCCCACTCATTGCCCTGACAATTGGCGGTTT CGGCTATTTGGTGTTCAAGAGCCTCAACCGGAGCTAACCGAAGCGAATCAGGCAGCGACA TGCTGCTTTAAAAAGCTCACCACCAAGTTCAACCAAGAACCAGAGAAAGCCAAGAAGTCT CAAAACGGATCTTCATTCTTCAGTACTCAGTCCAGACACCAAACCGATGTTCTCCTGCGA GCTATAGACGGTCCTCACTCAGATCATTGGTCTCATGGGGACCATATCTGATAGATTTTA CAATTTCAAGATAGATAAACTCATATACCAGCACAAGCAACAGAGCAGTCTTGATACTCG GGCCAAGTTACTTGGAAGCTTAAAAACTGTGTACTAAAGAGCGTAGAGTTATACAATATC GTCTGTAATGGATACTGGAAAGCCCCCAGTATCAATAAATTTTGGAGACGCTAGTAATCC CGATATAATGTCGAACAAGTCGTGGGAAAAGAGCATAGTCATTTTACTGGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)