These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 955 fasta sequence [CGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGCCCGCGCGCGGCGGCGCGGGAGCGCCGCAGCGGCCGCGTCCCGGCCGTGCTACTCGCCCTCGCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGGCATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTC-TGCAAGATCTTGGCCTCGAAA-CCAGTTGAGTAGAGGAATCCA-TGC-AAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGTTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTCACAAAATAACACCAGCTTTCTCAGTTTAACATACACAAGACATTTTGTCGATTCTTGGTTGTGGCCTGGGTGTATTGACACGCCGAGCTGATAATGTCGAANTTTNA] [+] EMBL AK071403 [CGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGCCCGCGCGCGGCGGCGCGGGAGCGCCGCAGCGGCCGCGTCCCGGCCGTGCTACTCGCCCTCGCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGGCATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTC TGCAAGATCTTGGCCTCGAAA CCAGTTGAGTAGAGGAATCCA TGC AAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGTTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTCACAAAATAACACCAGCTTTCTCAGTTTAACATACACAAGA ] [+] EMBL C97112 [ AACCGAGACCATNCCTGTCTTGAAAGATCTTGGCCCCGAAACCCAGTTAANTAGAGGAATCCATTGCAAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGNTACAGCANCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGNTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTNANNAAATAACACCAGCTTTCTCAGTTTAACATACACAAGACATTTTGTCGATTCTTGGTTGTGGCCTGGGTGTATTGACACGCCGAGCTGATAATGTCGAANTTTNA] consensusID : consensus_7625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence [GTGCTACTCGCCCTCNCCGG-CGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGNTCCGCGCCGGCGAGCGATCCACCGCCGTCGTNCACNCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGGAATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGGTCAAACAAGTTATCA] [+] EMBL AU160871 [GTGCTACTCGCCCTCNCCGG CGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGNTCCGCGCCGGCGAGCGATCCACCGCCGTCGTNCACNCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGGAATCCATG ] [+] EMBL BI305547 [ CGGACGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCATTGAAGTTACTGAGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGGAATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGGTCAAACAAGTTATCA] consensusID : consensus_7625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CGCTTTGCCTCCGCCGCGCCGCCGCCGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGTCCGCGCGCGGGGGAGCGGGAGCGCCGGAGTGGTCGAGTCCCGGTCGTGCTACTCGCCCTCGCCGGCGCCGGTCGCGGTGAGGGTTAGGACCACCGTAACTCCTCACCGCCGAGCCCGAAGAGCTGGGGGGCATTCTGCAGGAGTTCGCGTGCTTCTCCTCCACTGACGTACGGCTTCAGGCTCGCGCTGGAGAGCAGTCCCCCGCTGTCGCGCACTCTGGTTTTGCCCACCCTATCTACGTGCGTGGAGCGCTACCGCCACCGAATTGGGTGACCTTGGTGCTGTTGAAGGGCTAGGACGTGACATGCTTCCCCGTACTTCGCTGTGGAGTTCAGGACCAGTTCGCCCCTCATGGGCTTACAAACGGCGGCCTTTTCTGGACGGATAAGTGCAACCTGCTGTTTGTCAGCCCCCTTGGGTTCATCCCTTTAAATGGTTTCGGAGCACCTCGTCACTTT] [+] EMBL CA754199 [CGCTTTGCCTCCGCCGCGCCGCCGCCGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGTCCGCGCGCGGGGGAGCGGGAGCGCCGGAGTGGTCGAGTCCCGGTCGTGCTACTCGCCCTCGCCGGCGCCGGTCGCGGTGAGGGTTAGGACCACCGTAACTCCTCACCGCCGAGCCCGAAGAGCTGGGGGGCATTCTGCAGGAGTTCGCGTGCTTCTCCTCCACTGACGTACGGCTTCAGGCTCGCGCTGGAGAGCAGTCCCCCGCTGTCGCGCACTCTGGTTTTGCCCACCCTATCTACGTGCGTGGAGCGCTACCGCCACCGAATTGGGTGACCTTGGTGCTGTTGAAGGGCTAGGACGTGACATGCTTCCCCGTACTTCGCTGTGGAGTTCAGGACCAGTTCGCCCCTCATGGGCTTACAAACGGCGGCCTTTTCTGGACGGATAAGTGCAACCTGCTGTTTGTCAGCCCCCTTGGGTTCATCCCTTTAAATGGTTTCGGAGCACCTCGTCACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7625#0 -------------------------CGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTT 35 consensus_7625#1 ------------------------------------------------------------ consensus_7625#2 CGCTTTGCCTCCGCCGCGCCGCCGCCGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTT 60 consensus_7625#0 CGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGC 95 consensus_7625#1 ------------------------------------------------------------ consensus_7625#2 CGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGC 120 consensus_7625#0 CGCGGGAGACGGCCGGCCCGCGCGCGGCGGCGCGGGAGCGCCGCAGCGGCCGCGTCCCGG 155 consensus_7625#1 ------------------------------------------------------------ consensus_7625#2 CGCGGGAGACGGCCGGTCCGCGCGCGGGGGAGCGGGAGCGCCGGAGTGGTCGAGTCCCGG 180 consensus_7625#0 CCGTGCTACTCGCCCTCGCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCC 215 consensus_7625#1 --GTGCTACTCGCCCTCNCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCC 58 consensus_7625#2 TCGTGCTACTCGCCCTCGCCGGCGCCGGTCGCGGTGAGGGTTAGGACCACCGTAA-CTCC 239 *************** ********** * *** ***** ** ****** ** **** consensus_7625#0 TCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCA 275 consensus_7625#1 TCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCA 118 consensus_7625#2 TCACCGCCGAGCCCGAAGAGCTGGGGGGCATTCTGCAGGAGTTCGCGTGCTTCTCCTCCA 299 ********** * **** **** ****** ** *** * * * **** ***** consensus_7625#0 CCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCA 335 consensus_7625#1 CCCCCGTCCGCCTCCAGNTCCGCGCCGGCGAGCGATCCACCGCCGTCGTNCACNCCGGCA 178 consensus_7625#2 CTGACGTACGGCTTCAGGCTCGCGCTGGAGAGCAGTCCCCCGCTGTCGCGCACTCTGGTT 359 * *** ** ** *** ***** ** **** *** **** **** *** * ** consensus_7625#0 CTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGC 395 consensus_7625#1 CTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGC 238 consensus_7625#2 TTGCCCACCCTATCTACGTGCGTGGAGCGCTACCGCCACCGAATTGGGTGACCTTGGTGC 419 ** ** ******* * **** * *** * * ** *** *** ******** consensus_7625#0 TGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGG 455 consensus_7625#1 TGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGG 298 consensus_7625#2 TGTTGAAGGGCTAGGACGTGACA-TGCTTCCC-CGTACTTCGCTGTGGAGTTCA-GGACC 476 ** ** *** * ** * *** **** * **** **** ******* ** consensus_7625#0 AGGACGTCTGCCCTGGGTTGAAGAAAG--------------AAAATAAGGACCAGCTTGG 501 consensus_7625#1 AGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGG 358 consensus_7625#2 AGTTCGCCCCTCATGGGCTTACAAACGGCGGCCTTTTCTGGACGGATAAGTGCAACCTGC 536 ** ** * * **** * * ** * * * * ** * ** consensus_7625#0 TGTATCTCTGCCCTGCTGAGCACATCCCTCCAAA-AATTGAGGTGGACCTGGCAAATCTT 560 consensus_7625#1 TGTATCTCTGCCCTGCTGAGCACATCCCTCCAAA-AATTGAGGTGGACCTGGCAAATCTT 417 consensus_7625#2 TGTTTGTCAGCCCCCTTGGGTTCATCCCTTTAAATGGTTTCGGAGCACCTCGTCACTTT- 595 *** * ** **** ** * ******* *** ** ** * **** * * * * consensus_7625#0 GGCATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTG 620 consensus_7625#1 GACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTG 477 consensus_7625#2 ------------------------------------------------------------ consensus_7625#0 AGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGG 680 consensus_7625#1 AGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGG 537 consensus_7625#2 ------------------------------------------------------------ consensus_7625#0 AATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGT 740 consensus_7625#1 AATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGT 597 consensus_7625#2 ------------------------------------------------------------ consensus_7625#0 AACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAAT 800 consensus_7625#1 AACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAAT 657 consensus_7625#2 ------------------------------------------------------------ consensus_7625#0 AGGTTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTCACAAAATAACAC 860 consensus_7625#1 AGGGTCAAACAAGTTATCA----------------------------------------- 676 consensus_7625#2 ------------------------------------------------------------ consensus_7625#0 CAGCTTTCTCAGTTTAACATACACAAGACATTTTGTCGATTCTTGGTTGTGGCCTGGGTG 920 consensus_7625#1 ------------------------------------------------------------ consensus_7625#2 ------------------------------------------------------------ consensus_7625#0 TATTGACACGCCGAGCTGATAATGTCGAANTTTNA 955 consensus_7625#1 ----------------------------------- consensus_7625#2 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||