cluster # 7628

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Oryza sativa
cluster # 7628 cluster # 7628 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7628#0 length = 902 sequences # 3

consensus_7628#1 length = 249 sequences # 1
consensus_7628#2 length = 132 sequences # 1

consensusID : consensus_7628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 902
fasta sequence

                              [TTTTCACCTCGCCGTCCCACTCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCTTCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGATTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGCGACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAAAGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAAC-AAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAAGAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAACGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCCTGCTGGCCAGTGAAGCAAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTCTCTCTTTCTATCTGTGTGTGAAGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAACTGCAGGTTTTGTGCAGGTATTCTAGGTGA]

[+] EMBL AK059656             [TTTTCACCTCGCCGTCCCACTCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCTTCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGATTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGCGACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAAAGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAAC AAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAAGAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAACGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCCTGCTGGCCAGTGAAGCAAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTCTCTCTTTCTATCTGTGTGTGAAGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAACTGCAGGTTTTGTGCAGGTATTCTAGGTGA]
[+] EMBL AU162349             [               CCCACNCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCTTCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGATTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGCGACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAAAGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAACAAAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAA                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU031334             [                                                                                                                                                                      CAGATTCGTTGA CCACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGANAATGGCAAGCAAAGCAGGTGGTGCCGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAAC AAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAAGAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAACGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCCTGCTGGCCAGTGAAGCAAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTCTCTCTTTCTATCTGTGTGTGAAGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAAaaa                                       ]




>consensus_7628#0
TTTTCACCTCGCCGTCCCACTCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCT
TCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGA
TTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGC
GACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAA
AGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAA
CATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAG
TGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAG
AATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCG
CAACAAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAA
GAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAA
CGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCC
TGCTGGCCAGTGAAGCAAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAA
GTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTCTCTCTTTCTATCTGTGTGTGA
AGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTAT
CTGGCTATGCTAGTTGATAACTTCGGTCATAACTGCAGGTTTTGTGCAGGTATTCTAGGT
GA

consensusID : consensus_7628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [GGTCCTCGCTGGCCCGTGAAGCCCATAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTGTGCTGAGATGTCACACTGAGTTTCGGTCTCTGCTTGTCTATCTCGTGGTGTGGAAGTATACCTGACTATTTCTTTCTGTGGGAACCCACTGGAATCCCTGTCCCACTGTACCATTGAATGGCTATCTGGGCTATGGCTAGTTGATAACTTCGGTCATAAAAAAAAAA]

[+] EMBL BI805251             [GGTCCTCGCTGGCCCGTGAAGCCCATAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTGTGCTGAGATGTCACACTGAGTTTCGGTCTCTGCTTGTCTATCTCGTGGTGTGGAAGTATACCTGACTATTTCTTTCTGTGGGAACCCACTGGAATCCCTGTCCCACTGTACCATTGAATGGCTATCTGGGCTATGGCTAGTTGATAACTTCGGTCATAAAAAAAAAA]




>consensus_7628#1
GGTCCTCGCTGGCCCGTGAAGCCCATAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGA
TTATGAAAGTTAGGTTGCTCTGTGCTGAGATGTCACACTGAGTTTCGGTCTCTGCTTGTC
TATCTCGTGGTGTGGAAGTATACCTGACTATTTCTTTCTGTGGGAACCCACTGGAATCCC
TGTCCCACTGTACCATTGAATGGCTATCTGGGCTATGGCTAGTTGATAACTTCGGTCATA
AAAAAAAAA

consensusID : consensus_7628#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 132
fasta sequence

                              [ACTATCCTTCTGTGGAACCGTGGAATCCGCTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF329642             [ACTATCCTTCTGTGGAACCGTGGAATCCGCTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7628#2
ACTATCCTTCTGTGGAACCGTGGAATCCGCTCCATGTACAATTGAATGCTATCTGGCTAT
GCTAGTTGATAACTTCGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7628#0      TTTTCACCTCGCCGTCCCACTCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCT 60
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      TCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGA 120
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      TTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGC 180
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      GACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAA 240
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      AGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAA 300
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      CATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAG 360
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      TGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAG 420
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      AATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCG 480
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      CAACAAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAA 540
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      GAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAA 600
consensus_7628#1      ------------------------------------------------------------
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      CGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCC 660
consensus_7628#1      -------------------------------------------------------GGTCC 5
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      T-GCTGGCCAGTGAAGC--AAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATG 717
consensus_7628#1      TCGCTGGCCCGTGAAGCCCATAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATG 65
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      AAAGTTAGGTTGCTCTTTGCT-AGATGTCA-ACTGA-TTTCGGTCTCTCTTT--CTATCT 772
consensus_7628#1      AAAGTTAGGTTGCTCTGTGCTGAGATGTCACACTGAGTTTCGGTCTCTGCTTGTCTATCT 125
consensus_7628#2      ------------------------------------------------------------
                                                                                  

consensus_7628#0      -GTG-TGTG-AAGTATACT--ACTATTC--TTCTGTGGAACCG---TGGAATCC--GTTC 820
consensus_7628#1      CGTGGTGTGGAAGTATACCTGACTATTTCTTTCTGTGGGAACCCACTGGAATCCCTGTCC 185
consensus_7628#2      ---------------------ACTATCC--TTCTGTGGAACCG---TGGAATCC--GCTC 32
                                           *****    ******** * *    ********  *  *

consensus_7628#0      CA-TGTACAATTGAATG-CTATCTGG-CTATG-CTAGTTGATAACTTCGGTCATAACTGC 876
consensus_7628#1      CACTGTACCATTGAATGGCTATCTGGGCTATGGCTAGTTGATAACTTCGGTCATAAAAAA 245
consensus_7628#2      CA-TGTACAATTGAATG-CTATCTGG-CTATG-CTAGTTGATAACTTCGGTCATAAAAAA 88
                      ** ***** ******** ******** ***** ***********************    

consensus_7628#0      AGGTTTTGTGCAGGTATTCTAGGTGA------------------ 902
consensus_7628#1      AAAA---------------------------------------- 249
consensus_7628#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 132
                      *