cluster # 763

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Oryza sativa
cluster # 763 cluster # 763 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_763#0 length = 1440 sequences # 1

consensus_763#1 length = 590 sequences # 1

consensusID : consensus_763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1440
fasta sequence

                              [GATGTACCGTGGGGAGGAGAAGCAGCACAAGCCGGTGCTCAAGAAGATGAAGGAGAAGGTCAAGAAGATCAAGAACACCATCGCCGGCGGCGGCGGCGGCGGCCACGGCGGGAACAACGGCGGCGAGCGCGCTAGCGGAAGCAGTAGCAGCAGCGAGGAGGGCGAGGACGATGTGGCGGCGCAGAGGATGGGTGACGTGGACCAGCGCGGGTACCAGGAGGACGTCGAGGAGGACAAGCCCGTCGCCATGGAGTCCGATCCCGAGGTCCATGGCGCTCCGATGTACGACTCGGCGAGGATCCCCTCGGTGCAGGAGGTGGAGGGCGACGGCGGCGCGCCGAGGGTGCGGCTCGGCGACCTCGGCGGCCCCGTCGTCGAGGACCCGGCGGCGCCGCGCTCCACGACGCGCGTGCCGCGGGAGGGGGAGGACATCGGCACGACGCCCGTCGTCTGCGCCTTCGAGTCGATGAGCGTCTCCGACGACCCGAAGCACGTCGGCGCGGCCGGGAAGCCGGACGCCGACGTGCAGAACGACCCAATGCCGGTGTCGGACGCCGCCACCGCCGGTGAGGAGTGGAAGGACGCGACGCCCGACAGCGCAGCTGCAGGCGCGACGCCCGGCGCGACGTACACCGACAAGATCAAGTCGGCGGCGGCGGGCACCACGGAGTACGGCAAGAAGCTGGCCACCACGGTGTACGAGAAGGTCGCCGGCGTCGGGACGGCCGTGGCCGGCAAGGTGCGGCAGGTGACGCAGTCGGCCGGCACCGCCACACCAGGCGTCGCCGGCGGCGCCGCCGGCTCACAGTCGCAGGACGACGTCGACGCCTCCACCACCCTCGCCTCCGGCGAGCCGGCGACCGGGGGGCAGCAGCAGCAGGACAAGGGGGTAACAGTCACCGGCTACATCGCCGACAAGCTCCGCCCGGGCGACGAGGACCGCGCGCTCAGCGAGGCCATCTCCGGCGCGGTGCAGCGGCGCAAGGACGACGTGGCGCAGCGCGTTCCGGCCGTGGCGCCGGCGGCGCCGGGCGACACGATCGCCAAGGTGCGGGAGGCGCCCGCGCAGGTGCTCGCCAAGGCGCGCGACGCCGTCACGTCGCTCACCGGCGGCACCCATGTCTCCGACACCGTGCAGCCCACCACCACCACAGAGGCGGATGGCGCGGAGGTGGAATCGGCGCCGGTGATTCGCGGGGAGGAGATCGGCGAGACCCAACGTCAGCCGAACGTAAGCATGACATGAAGCGTTGTAGAAATGGATCCTCTCGTGTGTGTCTGTATGTTGCCACGTATACACGTGTAAGTGTAAGAAAAGTGTCAGTGTGCTTGGAATAATAAGCCGTTATGTACGGCTTTTGTGTCGATGTGCAGTTTTTGTTTTTTGATGTCTTCTGTGTGTATGTAAGCAAGCCCGTTTTGAAAATGGCCAAGTTCAGT]

[+] EMBL AK062588             [GATGTACCGTGGGGAGGAGAAGCAGCACAAGCCGGTGCTCAAGAAGATGAAGGAGAAGGTCAAGAAGATCAAGAACACCATCGCCGGCGGCGGCGGCGGCGGCCACGGCGGGAACAACGGCGGCGAGCGCGCTAGCGGAAGCAGTAGCAGCAGCGAGGAGGGCGAGGACGATGTGGCGGCGCAGAGGATGGGTGACGTGGACCAGCGCGGGTACCAGGAGGACGTCGAGGAGGACAAGCCCGTCGCCATGGAGTCCGATCCCGAGGTCCATGGCGCTCCGATGTACGACTCGGCGAGGATCCCCTCGGTGCAGGAGGTGGAGGGCGACGGCGGCGCGCCGAGGGTGCGGCTCGGCGACCTCGGCGGCCCCGTCGTCGAGGACCCGGCGGCGCCGCGCTCCACGACGCGCGTGCCGCGGGAGGGGGAGGACATCGGCACGACGCCCGTCGTCTGCGCCTTCGAGTCGATGAGCGTCTCCGACGACCCGAAGCACGTCGGCGCGGCCGGGAAGCCGGACGCCGACGTGCAGAACGACCCAATGCCGGTGTCGGACGCCGCCACCGCCGGTGAGGAGTGGAAGGACGCGACGCCCGACAGCGCAGCTGCAGGCGCGACGCCCGGCGCGACGTACACCGACAAGATCAAGTCGGCGGCGGCGGGCACCACGGAGTACGGCAAGAAGCTGGCCACCACGGTGTACGAGAAGGTCGCCGGCGTCGGGACGGCCGTGGCCGGCAAGGTGCGGCAGGTGACGCAGTCGGCCGGCACCGCCACACCAGGCGTCGCCGGCGGCGCCGCCGGCTCACAGTCGCAGGACGACGTCGACGCCTCCACCACCCTCGCCTCCGGCGAGCCGGCGACCGGGGGGCAGCAGCAGCAGGACAAGGGGGTAACAGTCACCGGCTACATCGCCGACAAGCTCCGCCCGGGCGACGAGGACCGCGCGCTCAGCGAGGCCATCTCCGGCGCGGTGCAGCGGCGCAAGGACGACGTGGCGCAGCGCGTTCCGGCCGTGGCGCCGGCGGCGCCGGGCGACACGATCGCCAAGGTGCGGGAGGCGCCCGCGCAGGTGCTCGCCAAGGCGCGCGACGCCGTCACGTCGCTCACCGGCGGCACCCATGTCTCCGACACCGTGCAGCCCACCACCACCACAGAGGCGGATGGCGCGGAGGTGGAATCGGCGCCGGTGATTCGCGGGGAGGAGATCGGCGAGACCCAACGTCAGCCGAACGTAAGCATGACATGAAGCGTTGTAGAAATGGATCCTCTCGTGTGTGTCTGTATGTTGCCACGTATACACGTGTAAGTGTAAGAAAAGTGTCAGTGTGCTTGGAATAATAAGCCGTTATGTACGGCTTTTGTGTCGATGTGCAGTTTTTGTTTTTTGATGTCTTCTGTGTGTATGTAAGCAAGCCCGTTTTGAAAATGGCCAAGTTCAGT]




>consensus_763#0
GATGTACCGTGGGGAGGAGAAGCAGCACAAGCCGGTGCTCAAGAAGATGAAGGAGAAGGT
CAAGAAGATCAAGAACACCATCGCCGGCGGCGGCGGCGGCGGCCACGGCGGGAACAACGG
CGGCGAGCGCGCTAGCGGAAGCAGTAGCAGCAGCGAGGAGGGCGAGGACGATGTGGCGGC
GCAGAGGATGGGTGACGTGGACCAGCGCGGGTACCAGGAGGACGTCGAGGAGGACAAGCC
CGTCGCCATGGAGTCCGATCCCGAGGTCCATGGCGCTCCGATGTACGACTCGGCGAGGAT
CCCCTCGGTGCAGGAGGTGGAGGGCGACGGCGGCGCGCCGAGGGTGCGGCTCGGCGACCT
CGGCGGCCCCGTCGTCGAGGACCCGGCGGCGCCGCGCTCCACGACGCGCGTGCCGCGGGA
GGGGGAGGACATCGGCACGACGCCCGTCGTCTGCGCCTTCGAGTCGATGAGCGTCTCCGA
CGACCCGAAGCACGTCGGCGCGGCCGGGAAGCCGGACGCCGACGTGCAGAACGACCCAAT
GCCGGTGTCGGACGCCGCCACCGCCGGTGAGGAGTGGAAGGACGCGACGCCCGACAGCGC
AGCTGCAGGCGCGACGCCCGGCGCGACGTACACCGACAAGATCAAGTCGGCGGCGGCGGG
CACCACGGAGTACGGCAAGAAGCTGGCCACCACGGTGTACGAGAAGGTCGCCGGCGTCGG
GACGGCCGTGGCCGGCAAGGTGCGGCAGGTGACGCAGTCGGCCGGCACCGCCACACCAGG
CGTCGCCGGCGGCGCCGCCGGCTCACAGTCGCAGGACGACGTCGACGCCTCCACCACCCT
CGCCTCCGGCGAGCCGGCGACCGGGGGGCAGCAGCAGCAGGACAAGGGGGTAACAGTCAC
CGGCTACATCGCCGACAAGCTCCGCCCGGGCGACGAGGACCGCGCGCTCAGCGAGGCCAT
CTCCGGCGCGGTGCAGCGGCGCAAGGACGACGTGGCGCAGCGCGTTCCGGCCGTGGCGCC
GGCGGCGCCGGGCGACACGATCGCCAAGGTGCGGGAGGCGCCCGCGCAGGTGCTCGCCAA
GGCGCGCGACGCCGTCACGTCGCTCACCGGCGGCACCCATGTCTCCGACACCGTGCAGCC
CACCACCACCACAGAGGCGGATGGCGCGGAGGTGGAATCGGCGCCGGTGATTCGCGGGGA
GGAGATCGGCGAGACCCAACGTCAGCCGAACGTAAGCATGACATGAAGCGTTGTAGAAAT
GGATCCTCTCGTGTGTGTCTGTATGTTGCCACGTATACACGTGTAAGTGTAAGAAAAGTG
TCAGTGTGCTTGGAATAATAAGCCGTTATGTACGGCTTTTGTGTCGATGTGCAGTTTTTG
TTTTTTGATGTCTTCTGTGTGTATGTAAGCAAGCCCGTTTTGAAAATGGCCAAGTTCAGT

consensusID : consensus_763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [GGCACGAGTCTTCTTCCACCTCGCAAATCCGATCAACACATCAGCTTGAGAAACAATGGACGCGCCGGCCATGCTCACGACCAAGCACGTCCCCGAGGACGTCGGCCTCCGCAACGTCNCGGCGGCGGAAGANGANGGGGGACAGGGGCANATGCACCGTGGGGAGGAGAAGCAGCACAAGCCGGTGCTCAAGAANGTGAAGGAGAAGGTCNAGAAGATCNAGAACACCACCGCCGGTGAGGAATGGAAGGACGCGACNCCCGACAGCGCANCTGCAGGCGCGACGCCCGGCNCGACNTNCACCGACAAGATCAAGTCGGCGGCGGCGGGCACCACGGANTNCGGCAAGAACTGGCCNCCNCGGTGTACAAAAAGGTCCCCGGCNTCGGGACGGTCTTGGTCGGCAAGGTGCANCAGGTTACCCAAACGGCCGGCACCGACACACCANGCTTCCCGGCGGCGCCNCCGGCTCACATTCCCAGGANAACTTCAACNCCTCCACCACCCTCNCCTCCGGGAAACCGGCNACCGGGGGGCACANCANCAGGACAAGGGGGTTACATCNCGGCTACTCCCNACAACTCCCCGGG]

[+] EMBL AA751546             [GGCACGAGTCTTCTTCCACCTCGCAAATCCGATCAACACATCAGCTTGAGAAACAATGGACGCGCCGGCCATGCTCACGACCAAGCACGTCCCCGAGGACGTCGGCCTCCGCAACGTCNCGGCGGCGGAAGANGANGGGGGACAGGGGCANATGCACCGTGGGGAGGAGAAGCAGCACAAGCCGGTGCTCAAGAANGTGAAGGAGAAGGTCNAGAAGATCNAGAACACCACCGCCGGTGAGGAATGGAAGGACGCGACNCCCGACAGCGCANCTGCAGGCGCGACGCCCGGCNCGACNTNCACCGACAAGATCAAGTCGGCGGCGGCGGGCACCACGGANTNCGGCAAGAACTGGCCNCCNCGGTGTACAAAAAGGTCCCCGGCNTCGGGACGGTCTTGGTCGGCAAGGTGCANCAGGTTACCCAAACGGCCGGCACCGACACACCANGCTTCCCGGCGGCGCCNCCGGCTCACATTCCCAGGANAACTTCAACNCCTCCACCACCCTCNCCTCCGGGAAACCGGCNACCGGGGGGCACANCANCAGGACAAGGGGGTTACATCNCGGCTACTCCCNACAACTCCCCGGG]




>consensus_763#1
GGCACGAGTCTTCTTCCACCTCGCAAATCCGATCAACACATCAGCTTGAGAAACAATGGA
CGCGCCGGCCATGCTCACGACCAAGCACGTCCCCGAGGACGTCGGCCTCCGCAACGTCNC
GGCGGCGGAAGANGANGGGGGACAGGGGCANATGCACCGTGGGGAGGAGAAGCAGCACAA
GCCGGTGCTCAAGAANGTGAAGGAGAAGGTCNAGAAGATCNAGAACACCACCGCCGGTGA
GGAATGGAAGGACGCGACNCCCGACAGCGCANCTGCAGGCGCGACGCCCGGCNCGACNTN
CACCGACAAGATCAAGTCGGCGGCGGCGGGCACCACGGANTNCGGCAAGAACTGGCCNCC
NCGGTGTACAAAAAGGTCCCCGGCNTCGGGACGGTCTTGGTCGGCAAGGTGCANCAGGTT
ACCCAAACGGCCGGCACCGACACACCANGCTTCCCGGCGGCGCCNCCGGCTCACATTCCC
AGGANAACTTCAACNCCTCCACCACCCTCNCCTCCGGGAAACCGGCNACCGGGGGGCACA
NCANCAGGACAAGGGGGTTACATCNCGGCTACTCCCNACAACTCCCCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_763#0      GATGTACCGTGGGGAGGAGAAGCAGCACAAGCCGGTGCTCAAGAAGATGAAGGAGAAGGT 60
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      CAAGAAGATCAAGAACACCATCGCCGGCGGCGGCGGCGGCGGCCACGGCGGGAACAACGG 120
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      CGGCGAGCGCGCTAGCGGAAGCAGTAGCAGCAGCGAGGAGGGCGAGGACGATGTGGCGGC 180
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      GCAGAGGATGGGTGACGTGGACCAGCGCGGGTACCAGGAGGACGTCGAGGAGGACAAGCC 240
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      CGTCGCCATGGAGTCCGATCCCGAGGTCCATGGCGCTCCGATGTACGACTCGGCGAGGAT 300
consensus_763#1      --------------------------GGCACGAGTCTTC----TTCCACCTCGCAA--AT 28
                                                 ** *   ** *    * * **   ** *  **

consensus_763#0      CCCCTCGGTGCAGGAGGTGGAGGGCGACGGCGGCGCGCCGAGGGTGCGGCTCGGCGACCT 360
consensus_763#1      CCGATCAACACATCAGCTTGAGAAACAATG-GACGCGCCGGCCATGC----TCACGACCA 83
                     **  **    **  ** * ***    *  * * *******    ***       ***** 

consensus_763#0      CGGCGGCCCCGTCGTCGAGGACCCGGCGGCGCCGCGCTCCACGACGCGCGTGCCGCGGGA 420
consensus_763#1      AG-----CACGTCCCCGAGGAC--------GTCGGCCTCCGCAACGTCNCGGCGGCGGAA 130
                      *     * ****  *******        * **  **** * ***     ** **** *

consensus_763#0      GGGGGAGGACATCGGCACGACGCCCGTCGTCTGCGCCTTCGAGTCGATGAGCGTCTCCGA 480
consensus_763#1      GANGANGGGGGACAGG---------GGCANATGCACCGTGGGGAGGAGAAGCAGC----- 176
                     *  *  **    * *          * *   *** ** * * *  **  ***  *     

consensus_763#0      CGACCCGAAGCACGTCGGCGCGGCCGGGAAGCCGGACGCCGACGTGCAGAACGACCCAAT 540
consensus_763#1      ---------ACAAGCCGGTGC--TCAAGAANGTGAAGGAGAAGGTCNAGAA-GATCNAGA 224
                               ** * *** **   *  ***   * * *   * **  **** ** * *  

consensus_763#0      GCCGGTGTCGGACGCCGCCACCGCCGGTGAGGAGTGGAAGGACGCGACGCCCGACAGCGC 600
consensus_763#1      AC--------------ACCACCGCCGGTGAGGAATGGAAGGACGCGACNCCCGACAGCGC 270
                      *               **************** ************** ***********

consensus_763#0      AGCTGCAGGCGCGACGCCCGGCGCGACGTACACCGACAAGATCAAGTCGGCGGCGGCGGG 660
consensus_763#1      ANCTGCAGGCGCGACGCCCGGCNCGACNTNCACCGACAAGATCAAGTCGGCGGCGGCGGG 330
                     * ******************** **** * ******************************

consensus_763#0      CACCACGGAGTACGGCAAGAAGCTGGCCACCACGGTGTACGAGAAGGTCGCCGGCGTCGG 720
consensus_763#1      CACCACGGANTNCGGCAAGAA-CTGGCCNCCNCGGTGTACAAAAAGGTCCCCGGCNTCGG 389
                     ********* * ********* ****** ** ******** * ****** ***** ****

consensus_763#0      GACGGCCGTGGCCGGCAAGGTGCGGCAGGTGACGCAGTCGGCCGGCACCGCCACACCAGG 780
consensus_763#1      GACGGTCTTGGTCGGCAAGGTGCANCAGGTTACCCAAACGGCCGGCACCGACACACCANG 449
                     ***** * *** ***********  ***** ** **  ************ ******* *

consensus_763#0      CGTCGCCGGCGGCGCCGCCGGCTCACAGTCGCAGGACGACGTCGACGCCTCCACCACCCT 840
consensus_763#1      CTTC-CCGGCGGCGCCNCCGGCTCACATTCCCAGGANAACTTCAACNCCTCCACCACCCT 508
                     * ** *********** ********** ** *****  ** ** ** *************

consensus_763#0      CGCCTCCGGCGAGCCGGCGACCGGGGGGCAGCAGCAGCAGGACAAGGGGGTAACAGTCAC 900
consensus_763#1      CNCCTCCGGGAAACCGGCNACCGGGGGGCA-CANCANCAGGACAAGGGGGTTACATCN-- 565
                     * *******  * ***** *********** ** ** ************** ***     

consensus_763#0      CGGCTACATCGCCGACAAGCTCCGCCCGGGCGACGAGGACCGCGCGCTCAGCGAGGCCAT 960
consensus_763#1      CGGCTACTC--CCNACAA---CTCCCCGGG------------------------------ 590
                     *******    ** ****   *  ******                              

consensus_763#0      CTCCGGCGCGGTGCAGCGGCGCAAGGACGACGTGGCGCAGCGCGTTCCGGCCGTGGCGCC 1020
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      GGCGGCGCCGGGCGACACGATCGCCAAGGTGCGGGAGGCGCCCGCGCAGGTGCTCGCCAA 1080
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      GGCGCGCGACGCCGTCACGTCGCTCACCGGCGGCACCCATGTCTCCGACACCGTGCAGCC 1140
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      CACCACCACCACAGAGGCGGATGGCGCGGAGGTGGAATCGGCGCCGGTGATTCGCGGGGA 1200
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      GGAGATCGGCGAGACCCAACGTCAGCCGAACGTAAGCATGACATGAAGCGTTGTAGAAAT 1260
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      GGATCCTCTCGTGTGTGTCTGTATGTTGCCACGTATACACGTGTAAGTGTAAGAAAAGTG 1320
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      TCAGTGTGCTTGGAATAATAAGCCGTTATGTACGGCTTTTGTGTCGATGTGCAGTTTTTG 1380
consensus_763#1      ------------------------------------------------------------
                                                                                 

consensus_763#0      TTTTTTGATGTCTTCTGTGTGTATGTAAGCAAGCCCGTTTTGAAAATGGCCAAGTTCAGT 1440
consensus_763#1      ------------------------------------------------------------