cluster # 7632

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Oryza sativa
cluster # 7632 cluster # 7632 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7632#0 length = 546 sequences # 1

consensus_7632#1 length = 352 sequences # 4

consensusID : consensus_7632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [ACCCCCTCGACGGCCGGAACACATCGGGGGGGAACGCAGCCATGGGTGCTCGAAGGCGACCATGATCTGCATAGACCACTCGGAGTGGATGCGGAACCGCGACTACTCCCCGTCGCGATTCCCAGGCTCAGGCCGACCCTGTCCACCTCATCTGTGGGCGCCCAGACCCAGTCCAACCCGGGAGAACACCGTGGGGCGTCATGACCATGGGCCCGAAAGGGGCGTGCCCCTTGCTCCGTCACTCCCACCATTCGACCTCCGGCAAGATTCTCCCCTGGTATGCCCCGGACTTGAAGTTGGGTGCCGAAGCCAATTTGGGCTGCAGCCATTCAGGGTGCCCCAGCCGGGCTCTGAAGGCATCCCCCAGAATTAGAAGGCCCCCACCGCCGGATTATTAGCCTTTAATTGGAAGGCCCGGTGAAATACCACCAGAAAGGTTTTGGAAACCCATCGGGAAAAAGCCGAGGAAGAATAATGTGGCCCCTGACCTCCTGGACTTGGGTTAACCCCATTATTATTACCCGGAAAACCCGGAAGCCCCAATCC]

[+] EMBL CA753365             [ACCCCCTCGACGGCCGGAACACATCGGGGGGGAACGCAGCCATGGGTGCTCGAAGGCGACCATGATCTGCATAGACCACTCGGAGTGGATGCGGAACCGCGACTACTCCCCGTCGCGATTCCCAGGCTCAGGCCGACCCTGTCCACCTCATCTGTGGGCGCCCAGACCCAGTCCAACCCGGGAGAACACCGTGGGGCGTCATGACCATGGGCCCGAAAGGGGCGTGCCCCTTGCTCCGTCACTCCCACCATTCGACCTCCGGCAAGATTCTCCCCTGGTATGCCCCGGACTTGAAGTTGGGTGCCGAAGCCAATTTGGGCTGCAGCCATTCAGGGTGCCCCAGCCGGGCTCTGAAGGCATCCCCCAGAATTAGAAGGCCCCCACCGCCGGATTATTAGCCTTTAATTGGAAGGCCCGGTGAAATACCACCAGAAAGGTTTTGGAAACCCATCGGGAAAAAGCCGAGGAAGAATAATGTGGCCCCTGACCTCCTGGACTTGGGTTAACCCCATTATTATTACCCGGAAAACCCGGAAGCCCCAATCC]




>consensus_7632#0
ACCCCCTCGACGGCCGGAACACATCGGGGGGGAACGCAGCCATGGGTGCTCGAAGGCGAC
CATGATCTGCATAGACCACTCGGAGTGGATGCGGAACCGCGACTACTCCCCGTCGCGATT
CCCAGGCTCAGGCCGACCCTGTCCACCTCATCTGTGGGCGCCCAGACCCAGTCCAACCCG
GGAGAACACCGTGGGGCGTCATGACCATGGGCCCGAAAGGGGCGTGCCCCTTGCTCCGTC
ACTCCCACCATTCGACCTCCGGCAAGATTCTCCCCTGGTATGCCCCGGACTTGAAGTTGG
GTGCCGAAGCCAATTTGGGCTGCAGCCATTCAGGGTGCCCCAGCCGGGCTCTGAAGGCAT
CCCCCAGAATTAGAAGGCCCCCACCGCCGGATTATTAGCCTTTAATTGGAAGGCCCGGTG
AAATACCACCAGAAAGGTTTTGGAAACCCATCGGGAAAAAGCCGAGGAAGAATAATGTGG
CCCCTGACCTCCTGGACTTGGGTTAACCCCATTATTATTACCCGGAAAACCCGGAAGCCC
CAATCC

consensusID : consensus_7632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 352
fasta sequence

                              [CCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT-TCCAGGCTCAGGCCGA-CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTNCGCGTNCTTCGTCACTCCCACCAGCGACCTCGGCAAGATNCTCGTTTGTATTCACGGCTTTTAAGTTNGTGCTGAAGAAATTTTGCTTCAAGAATTCAGGTTCTNA]

[+] EMBL CF307864             [CCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT TCCAGGCTCAGGCCGA CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTC                                                                                                                                  ]
[+] EMBL OSS13105A            [        TCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT TCCAGGCTCAGGCCGA CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTNCGCGTNCTTCGTCACTCCCACCAGCGACCTCGGCAAGATNCTCGTTTGTATTCACGGCTTTTAAGTTNGTGCTGAAGAAATTTTGCTTCAAGAATTCAGGTTCTNA]
[+] EMBL C26519               [          TTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCG CTNNGCGATNTCCAGGCTCAGGCCGANCGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTC                                                                                                                                  ]
[+] EMBL CB683635             [                                CCCCCCTTTGGGCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACCATGATCTGCATAGACAACTCTGACTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT TCCAGGCTCATGCCGA CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAATCCAACCCGGAGAACACGGTGGGCGTC                                                                                                                                  ]




>consensus_7632#1
CCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGG
GACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGG
AACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGT
GGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAG
GGCGTNCGCGTNCTTCGTCACTCCCACCAGCGACCTCGGCAAGATNCTCGTTTGTATTCA
CGGCTTTTAAGTTNGTGCTGAAGAAATTTTGCTTCAAGAATTCAGGTTCTNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7632#0      ------------------------------ACCCCCTCGACGGCCGGAACACATCGGGGG 30
consensus_7632#1      CCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGG 60
                                                    ******************************

consensus_7632#0      GGAACGCAGCCATGGGTGCTCGAAGGCGACCATGATCTGCATAGACCACTCGGAGTGGAT 90
consensus_7632#1      G--ACGCAGCCATGG-TGCTCGA-GGCGACGATGATCTGCATAGACAACTCGGAGTGGAT 116
                      *  ************ ******* ****** *************** *************

consensus_7632#0      GCGGAACCGCGACTACTCCCCGTCGCGATTCCCAGGCTCAGGCCGACCCTGTCCACCTCA 150
consensus_7632#1      GCGGAACGGCGACTACTCGCCGTCGCGATTCC-AGGCTCAGGCCGACGCCGTCAACCTCA 175
                      ******* ********** ************* ************** * *** ******

consensus_7632#0      TCTGTGGGCGCCCAGACCCAGTCCAACCCGGGAGAACACCGTGGGGCGTCATGACCATGG 210
consensus_7632#1      TCTGTGG-CGCCAAGACCCAGTCCAACCCGG-AGAACACGGTGGG-CGTCATGACGATGG 232
                      ******* **** ****************** ******* ***** ********* ****

consensus_7632#0      GCCCGAAAGGGGCGTGCCCCTTGCTCCGTCACTCCCACCATTCGACCTCCGGCAAGATTC 270
consensus_7632#1      --CCGGAAAGGGCGTNCGCGTN-CTTCGTCACTCCCACCAG-CGACCTC-GGCAAGATNC 287
                        *** ** ****** * * *  ** **************  ******* ******** *

consensus_7632#0      TCCCCTGGTATGCCCCGGACTTGAAGTTGGGTGCCGAAGCCAATTTGGGCTGCAGCCATT 330
consensus_7632#1      TCGTTTG-TAT-TCACGGCTTTTAAGTTNG-TGCTGAAG--AAATTTTGCTTCAAGAATT 342
                      **   ** ***  * ***  ** ***** * *** ****  ** **  *** **   ***

consensus_7632#0      CAGGGTGCCCCAGCCGGGCTCTGAAGGCATCCCCCAGAATTAGAAGGCCCCCACCGCCGG 390
consensus_7632#1      CAGGTTCTNA-------------------------------------------------- 352
                      **** *                                                      

consensus_7632#0      ATTATTAGCCTTTAATTGGAAGGCCCGGTGAAATACCACCAGAAAGGTTTTGGAAACCCA 450
consensus_7632#1      ------------------------------------------------------------
                                                                                  

consensus_7632#0      TCGGGAAAAAGCCGAGGAAGAATAATGTGGCCCCTGACCTCCTGGACTTGGGTTAACCCC 510
consensus_7632#1      ------------------------------------------------------------
                                                                                  

consensus_7632#0      ATTATTATTACCCGGAAAACCCGGAAGCCCCAATCC 546
consensus_7632#1      ------------------------------------