These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2253 fasta sequence [AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGGTGCCGTGCATCGCGCCGCCGCCGCCGGCCACCACCATCGTCGCCGCCGCTGACCGCCACCTCGCGAGGTGCCGACGGCCGTCGCGGGCTCGCGGCGTCACGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGGCACATCTAGCTGCTTCTTGTTCTACCCCCAAGAAAGGTATCGTGTCCTAGGCTCCTGGCTACTCCCCCACTATTTTGGCCTTTTGGGTAAGCACAGACCCGGNCATAAAAAGTAAAGCAGCCGATCGAGCAGCGGTGCAGCGCCATTCGTGCACAGGCATCATGGCG-ACCTCCCTGACCCTGATCGNCACACCATGCACGGGTTCTAGATCATCTTCGTCCTTCGCACTCGCTCCACGGCTGCCGCCTCGTTGCAGCAACGCGACTGCAGCACGTCGCCGCGCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGCCTCCCTCCTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGGGAGCACGCGTTCCACCACCTGTTCGACGGCTACGCGACGCTCGTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGGGCCGCCGTGGCGCGCGGCCGCCCGGTCCTCCGCGAGTTCTCCCACTGCCCCGCGCCGGCCAAGAGCCTGCTCCACCGCTTCGGCGATCTCGTCGGCCTCGTCACCGGCGCCGCGCTCACCGACAACCCCAACAGCGCCGTGCTGCCGCTCGGCGACGGCCGGGTGATGTGCCTCACCGAGACCACCAAGAGCTCCGTCCTCATCGACCCGGACACGCTCGAGACGGTGGGCAGGTTCCGGTACACGGACAGGCTGGGTGGCATGGTGCAGTCGGCGCACCCGATCGTGACCGACACGGAGTTCCTGACGCTGCTGCCGGACCTCGTCCGTCCGGGCCACCTCGTCGTGAGGATGGAGGCCGGGAGCAACGAGAGGAAGGTGATCGGGAGAATGGACTGCCGCGGCGGGCCGTCGCCCGGGTGGCTGCACTCGTTCGCCGTCACGGAGAAGTACGCCGTCGTGCCGGAGATGCCGCTCCGGTACTCCTCCGCCAGCCTGCTCGCCTCCGAGCTCGCCCCGTTCTACGCCTTCGACTGGGTCCCGGCGTCCGGCAGCTACATGCACGTCATGTGCAAGTCCACCGGCAAGACCGTGGCGAGCGTGGAGGTGCCTCCTTTCATGGCGATCCACTTCATCAACGCATACGAGGAGGAAGGCGACGAGGCCGCCGTCGTTGTCGACTGCTGTGAGCACTACGGTGACCCTGCCATCATCGAGACACTCGTCCTCAGTAGACTGAGATTGTTAAGGGGCAAGGACGTTTTACCTAACGCCAGGGTGGGGCGGTTCAGGATCCCGCTGGATGGGAGCCCGTTCGGCGAACTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGAGTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTATGAGCATCCATGTAACTCGTGGGGATTTTTATTTTAAGCACTACTGGAGAAACCATTTTTGTTGGGTTGGACAAAATCCACAATAATCCCAGTTTGAATATAAACCGGAACTAAAGATGATTTTTTATCCCGGGTTAAAACTTTATCGGCCCTAAGTGAACACCAANCGTGACTTAAGATGATTTTTAAAAAAAA] [+] EMBL AU161166 [AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGGTGCCGTGCATCGCGCCGCCGCCGCCGGCCACCACCATCGTCGCCGCCGCTGACCGCCACCTCGCGAGGTGCCGACGGCCGTCGCGGGCTCGCGGCGTCACGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGGCACATCTAGCTGCTTCTTGTTCTACCCCCAAGAAAGGTATCGTGTCCTAGGCTCCTGGCTACTCCCCCACTATTTTGGCCTTTTGGGTAAGCACAGACCCGGNCATAAAAAGTAAAGCAGCCGATCGAGCAGCGGTGCAGCGCCATTCGTGCACAGGCATCATGGCGAACCTCCCTGACCCTGATCGNCACACCATGCACGGGTTCTAGATCATCT ] [+] EMBL AK058473 [ TCGTGCACAGGCATCATGGCG ACCTCCCTGACCCTGATCGCCACACCATGCACGGCTCCTAGATCATCCTCGTCCTTCGCACTCGCTCCACGGCTGCCGCCTCGTTGCAGCAACGCGACTGCAGCACGTCGCCGCGCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGCCTCCCTCCTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGGGAGCACGCGTTCCACCACCTGTTCGACGGCTACGCGACGCTCGTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGGGCCGCCGTGGCGCGCGGCCGCCCGGTCCTCCGCGAGTTCTCCCACTGCCCCGCGCCGGCCAAGAGCCTGCTCCACCGCTTCGGCGATCTCGTCGGCCTCGTCACCGGCGCCGCGCTCACCGACAACCCCAACAGCGCCGTGCTGCCGCTCGGCGACGGCCGGGTGATGTGCCTCACCGAGACCACCAAGAGCTCCGTCCTCATCGACCCGGACACGCTCGAGACGGTGGGCAGGTTCCGGTACACGGACAGGCTGGGTGGCATGGTGCAGTCGGCGCACCCGATCGTGACCGACACGGAGTTCCTGACGCTGCTGCCGGACCTCGTCCGTCCGGGCCACCTCGTCGTGAGGATGGAGGCCGGGAGCAACGAGAGGAAGGTGATCGGGAGAATGGACTGCCGCGGCGGGCCGTCGCCCGGGTGGCTGCACTCGTTCGCCGTCACGGAGAAGTACGCCGTCGTGCCGGAGATGCCGCTCCGGTACTCCTCCGCCAGCCTGCTCGCCTCCGAGCTCGCCCCGTTCTACGCCTTCGACTGGGTCCCGGCGTCCGGCAGCTACATGCACGTCATGTGCAAGTCCACCGGCAAGACCGTGGCGAGCGTGGAGGTGCCTCCTTTCATGGCGATCCACTTCATCAACGCATACGAGGAGGAAGGCGACGAGGCCGCCGTCGTTGTCGACTGCTGTGAGCACTACGGTGACCCTGCCATCATCGAGACACTCGTCCTCAGTAGACTGAGATTGTTAAGGGGCAAGGACGTTTTACCTAACGCCAGGGTGGGGCGGTTCAGGATCCCGCTGGATGGGAGCCCGTTCGGCGAACTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGAGTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTATGAGCATCCATGTAACTCGTGGGGATTTTTATTTTAA ] [+] EMBL AU161167 [ GCAGCACGTCGCCGCGCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGCCTCCCTCNTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGGGAGCACGCGTTCCACCACCTGTTCGACGG TACGCGACGCTCGTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGGGCC ] [+] EMBL BP184554 [ ACTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGANTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTATGAGCATTCATGTAACTCGTGGGGATTTTTATTTTAAGCACTACTGGAGAAACCATTTTTGTTGGGTTGGACAAAATCCACAATAATCCCAGTTTGAATATAAACCGGAACTAAAGATGATTTTTTATCCCGGGTTAAAACTTTATCGGCCCTAAGTGAACACCAANCGTGACTTAAGATGATTTTTAAAAAAAA] consensusID : consensus_7640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGNTGCCGTGCATCGCGCCGCGCGCGNCACCACCATCGTCGCGCGCTGACCGCACCTCGCGAGGTGCGANGNCGTCGCGGGCTCGGGCGTCANGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGCACATCTAGNTGCTNC] [+] EMBL C28065 [AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGNTGCCGTGCATCGCGCCGCGCGCGNCACCACCATCGTCGCGCGCTGACCGCACCTCGCGAGGTGCGANGNCGTCGCGGGCTCGGGCGTCANGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGCACATCTAGNTGCTNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7640#0 AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGGTGCCGTGCATCGCGCC 60 consensus_7640#1 AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGNTGCCGTGCATCGCGCC 60 ******************************************* **************** consensus_7640#0 GCCGCCGCCGGCCACCACCATCGTCGCCGCCGCTGACCGCCACCTCGCGAGGTGCCGACG 120 consensus_7640#1 G----CGCGCGNCACCACCATCGTCGC--GCGCTGACCGC-ACCTCGCGAGGTGCGA--N 111 * *** * *************** ********** ************** consensus_7640#0 GCCGTCGCGGGCTCGCGGCGTCACGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGG 180 consensus_7640#1 GNCGTCGCGGGCTCG-GGCGTCANGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGG 170 * ************* ******* ************************************ consensus_7640#0 GCACATCTAGCTGCTTCTTGTTCTACCCCCAAGAAAGGTATCGTGTCCTAGGCTCCTGGC 240 consensus_7640#1 -CACATCTAGNTGCTNC------------------------------------------- 186 ********* **** * consensus_7640#0 TACTCCCCCACTATTTTGGCCTTTTGGGTAAGCACAGACCCGGNCATAAAAAGTAAAGCA 300 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GCCGATCGAGCAGCGGTGCAGCGCCATTCGTGCACAGGCATCATGGCGACCTCCCTGACC 360 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CTGATCGNCACACCATGCACGGGTTCTAGATCATCTTCGTCCTTCGCACTCGCTCCACGG 420 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CTGCCGCCTCGTTGCAGCAACGCGACTGCAGCACGTCGCCGCGCCGTGAGGGCAACCACG 480 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTG 540 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 TCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGC 600 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CTCCCTCCTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGG 660 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GAGCACGCGTTCCACCACCTGTTCGACGGCTACGCGACGCTCGTCCGCGTCTCCTTCCGC 720 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGG 780 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GCCGCCGTGGCGCGCGGCCGCCCGGTCCTCCGCGAGTTCTCCCACTGCCCCGCGCCGGCC 840 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 AAGAGCCTGCTCCACCGCTTCGGCGATCTCGTCGGCCTCGTCACCGGCGCCGCGCTCACC 900 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GACAACCCCAACAGCGCCGTGCTGCCGCTCGGCGACGGCCGGGTGATGTGCCTCACCGAG 960 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 ACCACCAAGAGCTCCGTCCTCATCGACCCGGACACGCTCGAGACGGTGGGCAGGTTCCGG 1020 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 TACACGGACAGGCTGGGTGGCATGGTGCAGTCGGCGCACCCGATCGTGACCGACACGGAG 1080 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 TTCCTGACGCTGCTGCCGGACCTCGTCCGTCCGGGCCACCTCGTCGTGAGGATGGAGGCC 1140 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GGGAGCAACGAGAGGAAGGTGATCGGGAGAATGGACTGCCGCGGCGGGCCGTCGCCCGGG 1200 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 TGGCTGCACTCGTTCGCCGTCACGGAGAAGTACGCCGTCGTGCCGGAGATGCCGCTCCGG 1260 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 TACTCCTCCGCCAGCCTGCTCGCCTCCGAGCTCGCCCCGTTCTACGCCTTCGACTGGGTC 1320 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CCGGCGTCCGGCAGCTACATGCACGTCATGTGCAAGTCCACCGGCAAGACCGTGGCGAGC 1380 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GTGGAGGTGCCTCCTTTCATGGCGATCCACTTCATCAACGCATACGAGGAGGAAGGCGAC 1440 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GAGGCCGCCGTCGTTGTCGACTGCTGTGAGCACTACGGTGACCCTGCCATCATCGAGACA 1500 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CTCGTCCTCAGTAGACTGAGATTGTTAAGGGGCAAGGACGTTTTACCTAACGCCAGGGTG 1560 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GGGCGGTTCAGGATCCCGCTGGATGGGAGCCCGTTCGGCGAACTTGAGACGGCGCTGGAC 1620 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGG 1680 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 AAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTC 1740 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 ACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCG 1800 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 TCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATA 1860 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 TCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTT 1920 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 GAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGG 1980 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 ATCCCTGCGACGGAAGAGTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGA 2040 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 AGACTAGGATCATATGTATGAGCATCCATGTAACTCGTGGGGATTTTTATTTTAAGCACT 2100 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 ACTGGAGAAACCATTTTTGTTGGGTTGGACAAAATCCACAATAATCCCAGTTTGAATATA 2160 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 AACCGGAACTAAAGATGATTTTTTATCCCGGGTTAAAACTTTATCGGCCCTAAGTGAACA 2220 consensus_7640#1 ------------------------------------------------------------ consensus_7640#0 CCAANCGTGACTTAAGATGATTTTTAAAAAAAA 2253 consensus_7640#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||