cluster # 7655

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7655 cluster # 7655 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7655#0 length = 722 sequences # 4

consensus_7655#1 length = 242 sequences # 1

consensusID : consensus_7655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 722
fasta sequence

                              [CCCCGAGCCGCCGCCGGAGAGCAAGAACACGGAGGAGCGAGCGGGTCGTCGAGGGCGATGGCGGGAGGCGGCATGTTCGGCGGCGCCGGCGCGTTCTGGGCGACGCGGGCGCTGGAGGTGGTGAAGCGGAACGACTCCCCGGGACTGCTCTGGAAGCGGATCAAGCTCACCACCACCCGCAAGAACAACGCCAAGAAGCGCCTCAAGCGCCTCTGGCAGAATGAGGCAGTTATAAGGGCTTGTGGTGAAGCAGAATCGTCGTCGTCGTCAACATCAAACACCGCATCGGCCTCTGGGAAACAACAGTAGATCCCAAAGTCAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAAAGGCC---TC---------TGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATTGCTTGCTGCCATATGCTTCCTTTCCTGCTTACATCACCCTTTAGCATCTTCCTCTCCCCACTGAACCCCACAATTTTTGTGCTTTGCATCACTTCCCTGAAGCTTCATATTTGTCTGTTTGCTTCCATCCCCTATGCATCATGCTTAGATCAATGTACTCACATCTACTGTTATGCAGATGCCTCTATTCTAGAATTCTATTCAGCATTGCAATGATGTGGAAACTTGAAAAAAAAAA]

[+] EMBL AK099534             [CCCCGAGCCGCCGCCGGAGAGCAAGAACACGGAGGAGCGAGCGGGTCGTCGAGGGCGATGGCGGGAGGCGGCATGTTCGGCGGCGCCGGCGCGTTCTGGGCGACGCGGGCGCTGGAGGTGGTGAAGCGGAACGACTCCCCGGGACTGCTCTGGAAGCGGATCAAGCTCACCACCACCCGCAAGAACAACGCCAAGAAGCGCCTCAAGCGCCTCTGGCAGAATGAGGCAGTTATAAGGGCTTGTGGTGAAGCAGAATCGTCGTCGTCGTCAACATCAAACACCGCATCGGCCTCTGGGAAACAACAGTAGATCCCAAAGTCAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAAAGGCC   TC         TGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATT                                                                                                                                                                                                                                              ]
[+] EMBL CA762528             [                              GGAGGAGCGAGCGGGTCGTCGAGGGCGATGGCGGGAGGCGGCATGTTCGGCGGCGCCGGCGCGTTCTGGGCGACGCGGGCGCTGGAGGTGGTGAAGCGGAACGACTCCCCGGGACTGCTCTGGAAGCGGATCAAGCTCACCACCACCCGCAAGAACAACGCCGAGAAGCGCCTCAAGCGCCTCTGGCAGAATGAGGCAGTTATAAGGGCTTGTGGTGAAGCAGAATCGTCGTCGTCGTCAACATCAAACACCGCATCGGCCTCTGGGAAACAACAGTAGATCCCAAAGTCAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAAAGGCCCAGTCAGTGACCTTTGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATTGCTTGCTGCCATATGCTTCCTTTCCTGCTTACATCACCCTTTAGCATCTTCCTCTCCCCACTGAACCCCACAATTTTTGTGCTTTGCATCACTTCCCTGAAGCTTCATATTTGTCTGTTTGCTTCCATCCCCTATGCATCATGCTTAGATCAATGTACTCACATCTACTGTTATGCAGATGCCTCTATTCTAGAATTCTATTCAGCATTGCAATGATGTGGAAACTTGAAAAAAAAAA]
[+] EMBL CB679025             [                                AGGACCTAGCGGGTCGTCGAGGGCGATGGCGGGAGGCGGCATGTTCGGCGGCGCCGGCGCGTTCTGGGCGACGCGGGCGCTGGAGGTGGTGAAGCGGAACGACTCCCCGGGACTGCTCTGGAAGCGGATCAAGCTCACCACCACCCGCAAGAACAACGCCAAGAAGCGCCTCAAGCGCCTCTGGCAGAATGAGGCAGTTATAAGGGCTTGTGGTGAAGCAGAATCGTCGTCGTCGTCAACATCAAACACCGCATCGGCCTCTGGGAAACAACAGTAGATCCCAAAGTCAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAAAGGCC   TC         TGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATT                                                                                                                                                                                                                                              ]
[+] EMBL CB096808             [                                                                                                          GGGCGCTGGAGGTGGTGAAGCGGAACGACTCCCCGGGACTGCTCTGGAAGCGGATCAAGCTCACCACCACCCGCAAGAACAACGCCAAGAAGCGCCTCAAGCGCCTCTGGCAGAATGAGGCAGTTATAAGGGCTTGTGGTGAAGCAGAATCGTCGTCGTCGTCAACATCAAACACCGCATCGGCCTCTGGGAAACAACAGTAGATCCCAAAGTCAATCTGATGACATGCACACGGGTTTAAATGCAATTTGAAAAGGCCCAGTCAGTGACCTTTGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATTGCTTG                                                                                                                                                                                                                                         ]




>consensus_7655#0
CCCCGAGCCGCCGCCGGAGAGCAAGAACACGGAGGAGCGAGCGGGTCGTCGAGGGCGATG
GCGGGAGGCGGCATGTTCGGCGGCGCCGGCGCGTTCTGGGCGACGCGGGCGCTGGAGGTG
GTGAAGCGGAACGACTCCCCGGGACTGCTCTGGAAGCGGATCAAGCTCACCACCACCCGC
AAGAACAACGCCAAGAAGCGCCTCAAGCGCCTCTGGCAGAATGAGGCAGTTATAAGGGCT
TGTGGTGAAGCAGAATCGTCGTCGTCGTCAACATCAAACACCGCATCGGCCTCTGGGAAA
CAACAGTAGATCCCAAAGTCAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAA
AGGCCTCTGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCA
ACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACAT
CATTGCTTGCTGCCATATGCTTCCTTTCCTGCTTACATCACCCTTTAGCATCTTCCTCTC
CCCACTGAACCCCACAATTTTTGTGCTTTGCATCACTTCCCTGAAGCTTCATATTTGTCT
GTTTGCTTCCATCCCCTATGCATCATGCTTAGATCAATGTACTCACATCTACTGTTATGC
AGATGCCTCTATTCTAGAATTCTATTCAGCATTGCAATGATGTGGAAACTTGAAAAAAAA
AA

consensusID : consensus_7655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAAAGGCCTCTGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATTGCTTGCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF328466             [CAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAAAGGCCTCTGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATTGCTTGCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7655#1
CAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAAAGGCCTCTGCATGACAATG
CTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCAACTGGAACAAGTACATGCA
TGTACACATCCAACCTTTTTTCATCAAGAGGACACATACATCATTGCTTGCTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7655#0      CCCCGAGCCGCCGCCGGAGAGCAAGAACACGGAGGAGCGAGCGGGTCGTCGAGGGCGATG 60
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      GCGGGAGGCGGCATGTTCGGCGGCGCCGGCGCGTTCTGGGCGACGCGGGCGCTGGAGGTG 120
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      GTGAAGCGGAACGACTCCCCGGGACTGCTCTGGAAGCGGATCAAGCTCACCACCACCCGC 180
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      AAGAACAACGCCAAGAAGCGCCTCAAGCGCCTCTGGCAGAATGAGGCAGTTATAAGGGCT 240
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      TGTGGTGAAGCAGAATCGTCGTCGTCGTCAACATCAAACACCGCATCGGCCTCTGGGAAA 300
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      CAACAGTAGATCCCAAAGTCAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAA 360
consensus_7655#1      -------------------CAATCTGATGACATGCACACAGGTTTAAATGCAATTTGAAA 41
                                         *****************************************

consensus_7655#0      AGGCCTCTGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCA 420
consensus_7655#1      AGGCCTCTGCATGACAATGCTGAAAGCCTCTCCATGTTTCCAAGCTTTGTTACTTCATCA 101
                      ************************************************************

consensus_7655#0      ACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACAT 480
consensus_7655#1      ACTGGAACAAGTACATGCATGTACACATCCAACCTTTTTTCATCAAGAGGACACATACAT 161
                      ************************************************************

consensus_7655#0      CATTGCTTGCTGCCATATGCTTCCTTTCCTGCTTACATCACCCTTTAGCATCTTCCTCTC 540
consensus_7655#1      CATTGCTTGCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 221
                      *************** *                 * *  *      *  *          

consensus_7655#0      CCCACTGAACCCCACAATTTTTGTGCTTTGCATCACTTCCCTGAAGCTTCATATTTGTCT 600
consensus_7655#1      AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 242
                         *   **    * **                                           

consensus_7655#0      GTTTGCTTCCATCCCCTATGCATCATGCTTAGATCAATGTACTCACATCTACTGTTATGC 660
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      AGATGCCTCTATTCTAGAATTCTATTCAGCATTGCAATGATGTGGAAACTTGAAAAAAAA 720
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      AA 722
consensus_7655#1      --