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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1960 fasta sequence
[CCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCCCCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAGAGCAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTTGGGGCCAGCGGCGGCGGCGCAGGAGAAGGCGGCGAGCCGGAACAAGCGCAAGTACCGCGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTACCCACTGACGGCCGACTGCGTGGGCTTCGAGTTCATGTCGCCGGAGAAGGCAGCCATCGCGGCGGCGGCGGCCGCCGCCGCGGTGGCCGCCGAGGGCGTCAACCTGGACCTCATCCCGGGCTCGTGCGATTGCAAGGATATTCACCCCACGGCGGAGGAGCTACTGGAGTGCCAGAGATATGTGAATTGGAATGACCCCAACGAGGCGCTGCTCGAGGAGATCCTTCTCAAGGGCCTGGACGCGACGTTCGACAATGCCGTAGGTGTGATCATCGCGATGGGTTACTCCGAGCCCACCGCGCGTGCCGCCGTCCTGCGGGCTGCCACGCAGTACAATTGGAGGGAGAGCCTTGCTGGGTTCGGCGAGGCGGCGGTCGAGGTGCTCAAGACCGAGGGGGACATGTTGAGTGAGGGCGCCTCCGAGGAAGACATGAGGAAGATTGAGCAGGCAGTGCTCGGTGGCATGATTGCGTTGGTCAATCAGGCTCAGCCGTTCTACACTACAGGTGATGTGATGTTCTGCTTGCTTATGTCGGATATGAATGTGGCCAATGCCTGTGCCATGGACTACAATCCGGCTTCCCTCCCAGCAGTGGATACGCAAGTGATTGCCCAGCCAGTTGTTGGAAACTATGAACCTAATAATCCAAGTTCGGATTTATCAGTATCTATTACCAACCCACAGACTGGCGTCACTTTTCGTGGAAAACTTACCCCAGTGCCACCCAATTCTTACAATACTGCCAAGGCTGATTCATCCGCAACACCAGCAAACCTGAATGTACCGAGCAGTAAACCCTCTGTCTCAGGTAAGGCGCAGAGTGAAATCCCGAATCTTAAGCCAAAAGAAAACTCAAATCCTGTGCCTGATCATTCAGAGGAGCAACCATTCGTTGCTGCTGCGACACAACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA]
[+] EMBL AK103601 [CCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCCCCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAGAGCAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTTGGGGCCAGCGGCGGCGGCGCAGGAGAAGGCGGCGAGCCGGAACAAGCGCAAGTACCGCGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTACCCACTGACGGCCGACTGCGTGGGCTTCGAGTTCATGTCGCCGGAGAAGGCAGCCATCGCGGCGGCGGCGGCCGCCGCCGCGGTGGCCGCCGAGGGCGTCAACCTGGACCTCATCCCGGGCTCGTGCGATTGCAAGGATATTCACCCCACGGCGGAGGAGCTACTGGAGTGCCAGAGATATGTGAATTGGAATGACCCCAACGAGGCGCTGCTCGAGGAGATCCTTCTCAAGGGCCTGGACGCGACGTTCGACAATGCCGTAGGTGTGATCATCGCGATGGGTTACTCCGAGCCCACCGCGCGTGCCGCCGTCCTGCGGGCTGCCACGCAGTACAATTGGAGGGAGAGCCTTGCTGGGTTCGGCGAGGCGGCGGTCGAGGTGCTCAAGACCGAGGGGGACATGTTGAGTGAGGGCGCCTCCGAGGAAGACATGAGGAAGATTGAGCAGGCAGTGCTCGGTGGCATGATTGCGTTGGTCAATCAGGCTCAGCCGTTCTACACTACAGGTGATGTGATGTTCTGCTTGCTTATGTCGGATATGAATGTGGCCAATGCCTGTGCCATGGACTACAATCCGGCTTCCCTCCCAGCAGTGGATACGCAAGTGATTGCCCAGCCAGTTGTTGGAAACTATGAACCTAATAATCCAAGTTCGGATTTATCAGTATCTATTACCAACCCACAGACTGGCGTCACTTTTCGTGGAAAACTTACCCCAGTGCCACCCAATTCTTACAATACTGCCAAGGCTGATTCATCCGCAACACCAGCAAACCTGAATGTACCGAGCAGTAAACCCTCTGTCTCAGGTAAGGCGCAGAGTGAAATCCCGAATCTTAAGCCAAAAGAAAACTCAAATCCTGTGCCTGATCATTCAGAGGAGCAACCATTCGTTGCTGCTGCGACACAACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTTGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAATTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA]
[+] EMBL AU091309 [ TCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCCCCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAG AGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTTGGGGCCAGNGGCGGCGGCGCAGGAGAAGGCGGCGAG CGGAACAAGCGCAAGTACCGTGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTACCCACTGACGGCCGACTNCGTGGGTTTCGAGTTAATGTCGCCGGAGA ]
[+] EMBL CB620848 [ AACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA]
[+] EMBL CB620808 [ AAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA]
consensusID : consensus_7656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[CGGAGGAAGTATTTATACATGTGTCCAAAGATTTGATGTGATGGAATTTTCAGAAGTTTGGAGGAACTAAACACTACCCACGTCAAAAAAAAAAAAGAAAAAGAAAAGCAAGCATACTCTCGCGACGCTGCAGCCGCGCGCCGTCACTGTTGGGGTCAGCGGCAGTGCATGAGAACTTGAGAAGGTAACCAGCCAGCCAGCCAACCGGAACAAGCGCAAGCACCGTGCCGAGCCGCCGTCCGCCGAACTGGGGTCATTCAGACTGGAGTGCCCACTAACGACGGATTGCGTGGGCTTCGACTTCATGTCGCCGGAGAAGGCCGCAATAGCAGCGATAGCCGCCGAGGGCGTTAACCTGGACCTCATCCTCCTCCTCCTCAGTCCAGCCCTCGTCGTCCATCCGCTGGCTCTTCTCCGGCTCCGGCAATGTCATCCATCCCCTCCGCCGTTTGACCTCCGACGAGGAAGGGACCGGAGGGAGAGGAGGAGATAAGAGGAGGGGAGTG]
[-] EMBL AK109282 [CGGAGGAAGTATTTATACATGTGTCCAAAGATTTGATGTGATGGAATTTTCAGAAGTTTGGAGGAACTAAACACTACCCACGTCAAAAAAAAAAAAGAAAAAGAAAAGCAAGCATACTCTCGCGACGCTGCAGCCGCGCGCCGTCACTGTTGGGGTCAGCGGCAGTGCATGAGAACTTGAGAAGGTAACCAGCCAGCCAGCCAACCGGAACAAGCGCAAGCACCGTGCCGAGCCGCCGTCCGCCGAACTGGGGTCATTCAGACTGGAGTGCCCACTAACGACGGATTGCGTGGGCTTCGACTTCATGTCGCCGGAGAAGGCCGCAATAGCAGCGATAGCCGCCGAGGGCGTTAACCTGGACCTCATCCTCCTCCTCCTCAGTCCAGCCCTCGTCGTCCATCCGCTGGCTCTTCTCCGGCTCCGGCAATGTCATCCATCCCCTCCGCCGTTTGACCTCCGACGAGGAAGGGACCGGAGGGAGAGGAGGAGATAAGAGGAGGGGAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7656#0 CCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTC 60
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 TCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCC 120
consensus_7656#1 --------------------CGGAGGAAGT--ATTTATACATGTGTCCAAAGATTTGATG 38
* ** * * ** * * * *
consensus_7656#0 CCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCG 180
consensus_7656#1 TGATGGAATTTTCAGAAGTTTGGAGGAACTAAACACTACCCACGTCAAAAAAAAAA---- 94
* *** *** ** * ** ** * *
consensus_7656#0 CAGGAAGGAACCAGAGCAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTT 240
consensus_7656#1 -AAGAAAAAGAAAAGCAAGCATACTCTCGCGACG-CTGCAGCCGCG-CGCCGTCACTGTT 151
* *** * * *** ** *** ** * * * **** *** *** ***
consensus_7656#0 GGGGCCAGCGGCGGCG-----GCGCAGGAGAAGG------------CGGCGAGCCGGAAC 283
consensus_7656#1 GGGGTCAGCGGCAGTGCATGAGAACTTGAGAAGGTAACCAGCCAGCCAGCCAACCGGAAC 211
**** ******* * * * * ******* * ** * *******
consensus_7656#0 AAGCGCAAGTACCGCGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTAC 343
consensus_7656#1 AAGCGCAAGCACCGTGCCGAGCCGCCGTCCGCCGAACTGGGGTCATTCAGACTGGAGTGC 271
********* **** ******************** ************ * ******* *
consensus_7656#0 CCACTGACGGCCGACTGCGTGGGCTTCGAGTTCATGTCGCCGGAGAAGGCAGCCATCGCG 403
consensus_7656#1 CCACTAACGACGGATTGCGTGGGCTTCGACTTCATGTCGCCGGAGAAGGCCGCAATAGCA 331
***** *** * ** ************** ******************** ** ** **
consensus_7656#0 GCGGCGGCGGCCGCCGCCGCGGTGGCCGCCGAGGGCGTCAACCTGGACCTCATCCCGGGC 463
consensus_7656#1 GCGA------------------TAGCCGCCGAGGGCGTTAACCTGGACCTCATCCTCCTC 373
*** * ************** **************** *
consensus_7656#0 TCGTGCGATTGCAAGGATATTCACCCCACGGCGGAGGAGCTACTGGAGTGCCAGAGATAT 523
consensus_7656#1 CTCCTCAGTC-CAGCCCTCGTCGTCCATCCGCTG--GCTCTTCTCCGGCTCCGGCAATGT 430
* * ** * ** ** * ** * * ** ** * ** * ** *
consensus_7656#0 GTGAATTGGAATGACCCCAACGAGGCGCTGCTCGAGGAGATCCTTCTCAAGGGCCTGGAC 583
consensus_7656#1 C---ATCC--ATCCCCTCCGCCGTTTGACCTCCGACGAGG--------AAGGGACCGGAG 477
** ** ** * * * *** *** ***** * ***
consensus_7656#0 GCGACGTTCGACAATGCCGTAGGTGTGATCATCGCGATGGGTTACTCCGAGCCCACCGCG 643
consensus_7656#1 GGAGAGGAGGAGATAAGAGGAGGGGAGTG------------------------------- 506
* * ** * * *** * *
consensus_7656#0 CGTGCCGCCGTCCTGCGGGCTGCCACGCAGTACAATTGGAGGGAGAGCCTTGCTGGGTTC 703
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GGCGAGGCGGCGGTCGAGGTGCTCAAGACCGAGGGGGACATGTTGAGTGAGGGCGCCTCC 763
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GAGGAAGACATGAGGAAGATTGAGCAGGCAGTGCTCGGTGGCATGATTGCGTTGGTCAAT 823
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 CAGGCTCAGCCGTTCTACACTACAGGTGATGTGATGTTCTGCTTGCTTATGTCGGATATG 883
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 AATGTGGCCAATGCCTGTGCCATGGACTACAATCCGGCTTCCCTCCCAGCAGTGGATACG 943
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 CAAGTGATTGCCCAGCCAGTTGTTGGAAACTATGAACCTAATAATCCAAGTTCGGATTTA 1003
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 TCAGTATCTATTACCAACCCACAGACTGGCGTCACTTTTCGTGGAAAACTTACCCCAGTG 1063
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 CCACCCAATTCTTACAATACTGCCAAGGCTGATTCATCCGCAACACCAGCAAACCTGAAT 1123
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GTACCGAGCAGTAAACCCTCTGTCTCAGGTAAGGCGCAGAGTGAAATCCCGAATCTTAAG 1183
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 CCAAAAGAAAACTCAAATCCTGTGCCTGATCATTCAGAGGAGCAACCATTCGTTGCTGCT 1243
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GCGACACAACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGG 1303
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCT 1363
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 AAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAG 1423
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 TGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAA 1483
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCT 1543
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCA 1603
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 GCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCT 1663
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 CCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTA 1723
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 TCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTG 1783
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 ATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCT 1843
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 CAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCA 1903
consensus_7656#1 ------------------------------------------------------------
consensus_7656#0 CTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA 1960
consensus_7656#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||