These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1960 fasta sequence [CCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCCCCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAGAGCAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTTGGGGCCAGCGGCGGCGGCGCAGGAGAAGGCGGCGAGCCGGAACAAGCGCAAGTACCGCGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTACCCACTGACGGCCGACTGCGTGGGCTTCGAGTTCATGTCGCCGGAGAAGGCAGCCATCGCGGCGGCGGCGGCCGCCGCCGCGGTGGCCGCCGAGGGCGTCAACCTGGACCTCATCCCGGGCTCGTGCGATTGCAAGGATATTCACCCCACGGCGGAGGAGCTACTGGAGTGCCAGAGATATGTGAATTGGAATGACCCCAACGAGGCGCTGCTCGAGGAGATCCTTCTCAAGGGCCTGGACGCGACGTTCGACAATGCCGTAGGTGTGATCATCGCGATGGGTTACTCCGAGCCCACCGCGCGTGCCGCCGTCCTGCGGGCTGCCACGCAGTACAATTGGAGGGAGAGCCTTGCTGGGTTCGGCGAGGCGGCGGTCGAGGTGCTCAAGACCGAGGGGGACATGTTGAGTGAGGGCGCCTCCGAGGAAGACATGAGGAAGATTGAGCAGGCAGTGCTCGGTGGCATGATTGCGTTGGTCAATCAGGCTCAGCCGTTCTACACTACAGGTGATGTGATGTTCTGCTTGCTTATGTCGGATATGAATGTGGCCAATGCCTGTGCCATGGACTACAATCCGGCTTCCCTCCCAGCAGTGGATACGCAAGTGATTGCCCAGCCAGTTGTTGGAAACTATGAACCTAATAATCCAAGTTCGGATTTATCAGTATCTATTACCAACCCACAGACTGGCGTCACTTTTCGTGGAAAACTTACCCCAGTGCCACCCAATTCTTACAATACTGCCAAGGCTGATTCATCCGCAACACCAGCAAACCTGAATGTACCGAGCAGTAAACCCTCTGTCTCAGGTAAGGCGCAGAGTGAAATCCCGAATCTTAAGCCAAAAGAAAACTCAAATCCTGTGCCTGATCATTCAGAGGAGCAACCATTCGTTGCTGCTGCGACACAACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA] [+] EMBL AK103601 [CCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCCCCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAGAGCAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTTGGGGCCAGCGGCGGCGGCGCAGGAGAAGGCGGCGAGCCGGAACAAGCGCAAGTACCGCGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTACCCACTGACGGCCGACTGCGTGGGCTTCGAGTTCATGTCGCCGGAGAAGGCAGCCATCGCGGCGGCGGCGGCCGCCGCCGCGGTGGCCGCCGAGGGCGTCAACCTGGACCTCATCCCGGGCTCGTGCGATTGCAAGGATATTCACCCCACGGCGGAGGAGCTACTGGAGTGCCAGAGATATGTGAATTGGAATGACCCCAACGAGGCGCTGCTCGAGGAGATCCTTCTCAAGGGCCTGGACGCGACGTTCGACAATGCCGTAGGTGTGATCATCGCGATGGGTTACTCCGAGCCCACCGCGCGTGCCGCCGTCCTGCGGGCTGCCACGCAGTACAATTGGAGGGAGAGCCTTGCTGGGTTCGGCGAGGCGGCGGTCGAGGTGCTCAAGACCGAGGGGGACATGTTGAGTGAGGGCGCCTCCGAGGAAGACATGAGGAAGATTGAGCAGGCAGTGCTCGGTGGCATGATTGCGTTGGTCAATCAGGCTCAGCCGTTCTACACTACAGGTGATGTGATGTTCTGCTTGCTTATGTCGGATATGAATGTGGCCAATGCCTGTGCCATGGACTACAATCCGGCTTCCCTCCCAGCAGTGGATACGCAAGTGATTGCCCAGCCAGTTGTTGGAAACTATGAACCTAATAATCCAAGTTCGGATTTATCAGTATCTATTACCAACCCACAGACTGGCGTCACTTTTCGTGGAAAACTTACCCCAGTGCCACCCAATTCTTACAATACTGCCAAGGCTGATTCATCCGCAACACCAGCAAACCTGAATGTACCGAGCAGTAAACCCTCTGTCTCAGGTAAGGCGCAGAGTGAAATCCCGAATCTTAAGCCAAAAGAAAACTCAAATCCTGTGCCTGATCATTCAGAGGAGCAACCATTCGTTGCTGCTGCGACACAACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTTGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAATTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA] [+] EMBL AU091309 [ TCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCCCCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAG AGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTTGGGGCCAGNGGCGGCGGCGCAGGAGAAGGCGGCGAG CGGAACAAGCGCAAGTACCGTGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTACCCACTGACGGCCGACTNCGTGGGTTTCGAGTTAATGTCGCCGGAGA ] [+] EMBL CB620848 [ AACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA] [+] EMBL CB620808 [ AAGAGGGGGAGTTCTAAGCGGGATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCTAAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAGTGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAAGGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCTGCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCAGCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCTCCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTATCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTGATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCTCAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCACTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA] consensusID : consensus_7656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CGGAGGAAGTATTTATACATGTGTCCAAAGATTTGATGTGATGGAATTTTCAGAAGTTTGGAGGAACTAAACACTACCCACGTCAAAAAAAAAAAAGAAAAAGAAAAGCAAGCATACTCTCGCGACGCTGCAGCCGCGCGCCGTCACTGTTGGGGTCAGCGGCAGTGCATGAGAACTTGAGAAGGTAACCAGCCAGCCAGCCAACCGGAACAAGCGCAAGCACCGTGCCGAGCCGCCGTCCGCCGAACTGGGGTCATTCAGACTGGAGTGCCCACTAACGACGGATTGCGTGGGCTTCGACTTCATGTCGCCGGAGAAGGCCGCAATAGCAGCGATAGCCGCCGAGGGCGTTAACCTGGACCTCATCCTCCTCCTCCTCAGTCCAGCCCTCGTCGTCCATCCGCTGGCTCTTCTCCGGCTCCGGCAATGTCATCCATCCCCTCCGCCGTTTGACCTCCGACGAGGAAGGGACCGGAGGGAGAGGAGGAGATAAGAGGAGGGGAGTG] [-] EMBL AK109282 [CGGAGGAAGTATTTATACATGTGTCCAAAGATTTGATGTGATGGAATTTTCAGAAGTTTGGAGGAACTAAACACTACCCACGTCAAAAAAAAAAAAGAAAAAGAAAAGCAAGCATACTCTCGCGACGCTGCAGCCGCGCGCCGTCACTGTTGGGGTCAGCGGCAGTGCATGAGAACTTGAGAAGGTAACCAGCCAGCCAGCCAACCGGAACAAGCGCAAGCACCGTGCCGAGCCGCCGTCCGCCGAACTGGGGTCATTCAGACTGGAGTGCCCACTAACGACGGATTGCGTGGGCTTCGACTTCATGTCGCCGGAGAAGGCCGCAATAGCAGCGATAGCCGCCGAGGGCGTTAACCTGGACCTCATCCTCCTCCTCCTCAGTCCAGCCCTCGTCGTCCATCCGCTGGCTCTTCTCCGGCTCCGGCAATGTCATCCATCCCCTCCGCCGTTTGACCTCCGACGAGGAAGGGACCGGAGGGAGAGGAGGAGATAAGAGGAGGGGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7656#0 CCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTC 60 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 TCTCTCTCTTCTCCACTCCTCTGATCGACTCCGCTTCGATCCCCGCCGACGACCCCCCCC 120 consensus_7656#1 --------------------CGGAGGAAGT--ATTTATACATGTGTCCAAAGATTTGATG 38 * ** * * ** * * * * consensus_7656#0 CCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCG 180 consensus_7656#1 TGATGGAATTTTCAGAAGTTTGGAGGAACTAAACACTACCCACGTCAAAAAAAAAA---- 94 * *** *** ** * ** ** * * consensus_7656#0 CAGGAAGGAACCAGAGCAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTT 240 consensus_7656#1 -AAGAAAAAGAAAAGCAAGCATACTCTCGCGACG-CTGCAGCCGCG-CGCCGTCACTGTT 151 * *** * * *** ** *** ** * * * **** *** *** *** consensus_7656#0 GGGGCCAGCGGCGGCG-----GCGCAGGAGAAGG------------CGGCGAGCCGGAAC 283 consensus_7656#1 GGGGTCAGCGGCAGTGCATGAGAACTTGAGAAGGTAACCAGCCAGCCAGCCAACCGGAAC 211 **** ******* * * * * ******* * ** * ******* consensus_7656#0 AAGCGCAAGTACCGCGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTAC 343 consensus_7656#1 AAGCGCAAGCACCGTGCCGAGCCGCCGTCCGCCGAACTGGGGTCATTCAGACTGGAGTGC 271 ********* **** ******************** ************ * ******* * consensus_7656#0 CCACTGACGGCCGACTGCGTGGGCTTCGAGTTCATGTCGCCGGAGAAGGCAGCCATCGCG 403 consensus_7656#1 CCACTAACGACGGATTGCGTGGGCTTCGACTTCATGTCGCCGGAGAAGGCCGCAATAGCA 331 ***** *** * ** ************** ******************** ** ** ** consensus_7656#0 GCGGCGGCGGCCGCCGCCGCGGTGGCCGCCGAGGGCGTCAACCTGGACCTCATCCCGGGC 463 consensus_7656#1 GCGA------------------TAGCCGCCGAGGGCGTTAACCTGGACCTCATCCTCCTC 373 *** * ************** **************** * consensus_7656#0 TCGTGCGATTGCAAGGATATTCACCCCACGGCGGAGGAGCTACTGGAGTGCCAGAGATAT 523 consensus_7656#1 CTCCTCAGTC-CAGCCCTCGTCGTCCATCCGCTG--GCTCTTCTCCGGCTCCGGCAATGT 430 * * ** * ** ** * ** * * ** ** * ** * ** * consensus_7656#0 GTGAATTGGAATGACCCCAACGAGGCGCTGCTCGAGGAGATCCTTCTCAAGGGCCTGGAC 583 consensus_7656#1 C---ATCC--ATCCCCTCCGCCGTTTGACCTCCGACGAGG--------AAGGGACCGGAG 477 ** ** ** * * * *** *** ***** * *** consensus_7656#0 GCGACGTTCGACAATGCCGTAGGTGTGATCATCGCGATGGGTTACTCCGAGCCCACCGCG 643 consensus_7656#1 GGAGAGGAGGAGATAAGAGGAGGGGAGTG------------------------------- 506 * * ** * * *** * * consensus_7656#0 CGTGCCGCCGTCCTGCGGGCTGCCACGCAGTACAATTGGAGGGAGAGCCTTGCTGGGTTC 703 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GGCGAGGCGGCGGTCGAGGTGCTCAAGACCGAGGGGGACATGTTGAGTGAGGGCGCCTCC 763 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GAGGAAGACATGAGGAAGATTGAGCAGGCAGTGCTCGGTGGCATGATTGCGTTGGTCAAT 823 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CAGGCTCAGCCGTTCTACACTACAGGTGATGTGATGTTCTGCTTGCTTATGTCGGATATG 883 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 AATGTGGCCAATGCCTGTGCCATGGACTACAATCCGGCTTCCCTCCCAGCAGTGGATACG 943 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CAAGTGATTGCCCAGCCAGTTGTTGGAAACTATGAACCTAATAATCCAAGTTCGGATTTA 1003 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 TCAGTATCTATTACCAACCCACAGACTGGCGTCACTTTTCGTGGAAAACTTACCCCAGTG 1063 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CCACCCAATTCTTACAATACTGCCAAGGCTGATTCATCCGCAACACCAGCAAACCTGAAT 1123 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GTACCGAGCAGTAAACCCTCTGTCTCAGGTAAGGCGCAGAGTGAAATCCCGAATCTTAAG 1183 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CCAAAAGAAAACTCAAATCCTGTGCCTGATCATTCAGAGGAGCAACCATTCGTTGCTGCT 1243 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GCGACACAACCTGTGAAAGATGATAAGCCAATCCCTAGTAAGAGGGGGAGTTCTAAGCGG 1303 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GATTCCTTGCATCGGCAGAAGTTGATGAGTTTTGATAAGAGTTCCCGAGCACTGGGTTCT 1363 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 AAAGGATCTCTTAGGTCAAGCAAGCATAGCTCTTCGGGTAGCGCAGTGCTGGACAGGAAG 1423 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 TGCAGGTCGTTTTCAGATTCTACTACTAGCAGTTTGAAGGCCTCATCCAAAGTAGGCAAA 1483 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GGGTTTTCTGCAAGCATGAAGGGACCGGAAGTACCACCTGACCTTTCTTTTACTGGTGCT 1543 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GCCCTTCCCTCCAATCCATCATTTGATGCCAAGCTGAGTAGTAACTTGAACCCATTACCA 1603 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GCTGCTAGCACAGATCTCTCATTGTCGTTGCCATTGCCGTCCTCAAATGACAGTCCTGCT 1663 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CCATCTTCGAATCATGATGCCAATACAGAGGGTATGGACTCTAGCAGCAAAATCAACTTA 1723 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 TCATATGATGAGGATCAGAAGGTTTGGATCCCACAAGATAAGAAGGATGAAATGGTCTTG 1783 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 ATTCTTGTCCAGCGGCAGAAAGAGTTGCAAGCACATATGAGGGATTGGACAGACTGGGCT 1843 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CAGCAGAAGGTGATGCAAGTCACTCGTCGACTTGCCAAGGAGAAGGAAGAGCTTCATTCA 1903 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CTTAGGAAAGAGAAGGAAGAAGCGGACCGCCTCCAAGAAGAGAGGCACAATCTGGAA 1960 consensus_7656#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||