cluster # 766

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Oryza sativa
cluster # 766 cluster # 766 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_766#0 length = 725 sequences # 1

consensus_766#1 length = 680 sequences # 1

consensusID : consensus_766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence

                              [CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATTCTTAACAAATCACCGTATGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACAAACATCGACGGCGATGGTGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGCCGGCACGGCGGGGCAACGGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGGACCATCAGTGGCGCGTCGGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAGACATGCTGCGAGGAGGTGGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGACGTGCGCGGCATTAGCCGGAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCCGCCATCGTCGCTTTTCGTGTGAGACAGGAAGGGGATTGGGGGAAATGGCTCTAGGGTTAGGGATTACGGCAGTTTTTTTGTCCATGTCTCGAGCGATGCTGGCCGATCGATAGCATTTGACGGCTCTCAATTCATGGACGCCAACTCGGGCCAGAACCTGGCACATGGGCCTTCAGGCAATTAATCAGGCCACGGCTTGTGAGTCAAAAGAAACTGAAATATGCATGTGGGCCTTCGCGCTCATG]

[+] EMBL AK108160             [CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATTCTTAACAAATCACCGTATGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACAAACATCGACGGCGATGGTGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGCCGGCACGGCGGGGCAACGGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGGACCATCAGTGGCGCGTCGGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAGACATGCTGCGAGGAGGTGGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGACGTGCGCGGCATTAGCCGGAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCCGCCATCGTCGCTTTTCGTGTGAGACAGGAAGGGGATTGGGGGAAATGGCTCTAGGGTTAGGGATTACGGCAGTTTTTTTGTCCATGTCTCGAGCGATGCTGGCCGATCGATAGCATTTGACGGCTCTCAATTCATGGACGCCAACTCGGGCCAGAACCTGGCACATGGGCCTTCAGGCAATTAATCAGGCCACGGCTTGTGAGTCAAAAGAAACTGAAATATGCATGTGGGCCTTCGCGCTCATG]




>consensus_766#0
CCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACG
CCTGCCTGGGCGTCACGCACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATT
CTTAACAAATCACCGTATGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACA
AACATCGACGGCGATGGTGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGC
CGGCACGGCGGGGCAACGGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGG
ACCATCAGTGGCGCGTCGGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAG
ACATGCTGCGAGGAGGTGGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGAC
GTGCGCGGCATTAGCCGGAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCC
GCCATCGTCGCTTTTCGTGTGAGACAGGAAGGGGATTGGGGGAAATGGCTCTAGGGTTAG
GGATTACGGCAGTTTTTTTGTCCATGTCTCGAGCGATGCTGGCCGATCGATAGCATTTGA
CGGCTCTCAATTCATGGACGCCAACTCGGGCCAGAACCTGGCACATGGGCCTTCAGGCAA
TTAATCAGGCCACGGCTTGTGAGTCAAAAGAAACTGAAATATGCATGTGGGCCTTCGCGC
TCATG

consensusID : consensus_766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [CAGAATCGAAATATGCCTCTTAACATGATAAATACAAAATCCGAGCAACCCAATTTCGCAGTGTAGAACCATATACTCAAATACACATCCTTCCTACATATTTTCAATAGGATTTGTTCAAAAAAATAAAGAGAGAAGAAAAGGAAACAGAGAAGGAAAACATATGCCAATTTGGAAACGGAAAGACTGGCGAGAGAAGAAGAAAAAAATAACTAGGGAACAAATCCAAGCAGAGCCAAATACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATTCTTAACAAATCACCGTATGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACAAACATCGACGGCAATGGTGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGCCGGCACGGCGGGGCAACGGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGGACCATCAGTGGCGCGTCGGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAGACATGCTGCGAGGAGGTGGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGACGTGCGCGGCATTAGCCGGAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCCGCCATCGTCGCTTTTCGCGTGAGACAGGAAGGGGATT]

[-] EMBL AK059417             [CAGAATCGAAATATGCCTCTTAACATGATAAATACAAAATCCGAGCAACCCAATTTCGCAGTGTAGAACCATATACTCAAATACACATCCTTCCTACATATTTTCAATAGGATTTGTTCAAAAAAATAAAGAGAGAAGAAAAGGAAACAGAGAAGGAAAACATATGCCAATTTGGAAACGGAAAGACTGGCGAGAGAAGAAGAAAAAAATAACTAGGGAACAAATCCAAGCAGAGCCAAATACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATTCTTAACAAATCACCGTATGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACAAACATCGACGGCAATGGTGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGCCGGCACGGCGGGGCAACGGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGGACCATCAGTGGCGCGTCGGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAGACATGCTGCGAGGAGGTGGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGACGTGCGCGGCATTAGCCGGAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCCGCCATCGTCGCTTTTCGCGTGAGACAGGAAGGGGATT]




>consensus_766#1
CAGAATCGAAATATGCCTCTTAACATGATAAATACAAAATCCGAGCAACCCAATTTCGCA
GTGTAGAACCATATACTCAAATACACATCCTTCCTACATATTTTCAATAGGATTTGTTCA
AAAAAATAAAGAGAGAAGAAAAGGAAACAGAGAAGGAAAACATATGCCAATTTGGAAACG
GAAAGACTGGCGAGAGAAGAAGAAAAAAATAACTAGGGAACAAATCCAAGCAGAGCCAAA
TACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATTCTTAACAAATCACCGTA
TGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACAAACATCGACGGCAATGG
TGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGCCGGCACGGCGGGGCAAC
GGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGGACCATCAGTGGCGCGTC
GGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAGACATGCTGCGAGGAGGT
GGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGACGTGCGCGGCATTAGCCG
GAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCCGCCATCGTCGCTTTTCG
CGTGAGACAGGAAGGGGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_766#0      ------------------------------------------------------------
consensus_766#1      CAGAATCGAAATATGCCTCTTAACATGATAAATACAAAATCCGAGCAACCCAATTTCGCA 60
                                                                                 

consensus_766#0      ------------------------------------------------------------
consensus_766#1      GTGTAGAACCATATACTCAAATACACATCCTTCCTACATATTTTCAATAGGATTTGTTCA 120
                                                                                 

consensus_766#0      --------------------------------CCGTGAACCAT---CGAGTCTTTGAACG 25
consensus_766#1      AAAAAATAAAGAGAGAAGAAAAGGAAACAGAGAAGGAAAACATATGCCAATTTGGAAACG 180
                                                       *  ** ***   * * * *   ****

consensus_766#0      CAAG---TTGCGCCCGAGGCCATCCGGC----CGAGGGCACGCCTGCCTG-GGCGTCACG 77
consensus_766#1      GAAAGACTGGCGAGAGAAGAAGAAAAAAATAACTAGGGAACAAATCCAAGCAGAGCCAAA 240
                      **    * ***   ** *             * **** **   * *  *  * * **  

consensus_766#0      CACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATTCTTAACAAATCACCGTA 137
consensus_766#1      TACGGTAGGATATGCACCGAGATCAATTTGACCACCACCTATTCTTAACAAATCACCGTA 300
                      ***********************************************************

consensus_766#0      TGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACAAACATCGACGGCGATGG 197
consensus_766#1      TGAACTGGAGGAGAAAGGAGGTCAGGACGCTGTCGGGGCGACAAACATCGACGGCAATGG 360
                     ******************************************************* ****

consensus_766#0      TGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGCCGGCACGGCGGGGCAAC 257
consensus_766#1      TGCTTATCGCCCACGCCCATACCTCGTGCCACAGGGCATTGGCCGGCACGGCGGGGCAAC 420
                     ************************************************************

consensus_766#0      GGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGGACCATCAGTGGCGCGTC 317
consensus_766#1      GGGGAGGAGGAGAAGAGGCTGTTGTCGGCGGCTCGACGCAGGGACCATCAGTGGCGCGTC 480
                     ************************************************************

consensus_766#0      GGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAGACATGCTGCGAGGAGGT 377
consensus_766#1      GGCGCGGGTGCGACGTCGACGTGAGGCTATTGGCGCAGCGGAGACATGCTGCGAGGAGGT 540
                     ************************************************************

consensus_766#0      GGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGACGTGCGCGGCATTAGCCG 437
consensus_766#1      GGCTTTGTCTTCGCACTGCACACCATCGCTGCCCGCCGGAGACGTGCGCGGCATTAGCCG 600
                     ************************************************************

consensus_766#0      GAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCCGCCATCGTCGCTTTTCG 497
consensus_766#1      GAGACGGGTGCCTTGTCACCCTCGCTCCGCAGGAATCGCCGCCGCCATCGTCGCTTTTCG 660
                     ************************************************************

consensus_766#0      TGTGAGACAGGAAGGGGATTGGGGGAAATGGCTCTAGGGTTAGGGATTACGGCAGTTTTT 557
consensus_766#1      CGTGAGACAGGAAGGGGATT---------------------------------------- 680
                      *******************                                        

consensus_766#0      TTGTCCATGTCTCGAGCGATGCTGGCCGATCGATAGCATTTGACGGCTCTCAATTCATGG 617
consensus_766#1      ------------------------------------------------------------
                                                                                 

consensus_766#0      ACGCCAACTCGGGCCAGAACCTGGCACATGGGCCTTCAGGCAATTAATCAGGCCACGGCT 677
consensus_766#1      ------------------------------------------------------------
                                                                                 

consensus_766#0      TGTGAGTCAAAAGAAACTGAAATATGCATGTGGGCCTTCGCGCTCATG 725
consensus_766#1      ------------------------------------------------