cluster # 7660

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Oryza sativa
cluster # 7660 cluster # 7660 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7660#0 length = 702 sequences # 3

consensus_7660#1 length = 531 sequences # 2

consensusID : consensus_7660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 702
fasta sequence

                              [GACACTGACATGGACTGAGGAGTAGAAAAGCTTTGCCGCATCGCCGCTCTCGACGTCGCCCCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCG-CCAATTGCCAGATAATACAAACACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAA-GGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCAGCAGGACCCTGGGCTGGCACGCCAGATCCTATCAATGACAGTTCAGTGAAAAGTAGTCTTTTTCTATCTTTGTGAGTTTATTTTGTCGAATGCAATGCTAGAATTTGTTAATTCGACACAACTTGCTTTTGCTCCTCCTGTTATGTCTCTGGTGCTTCGCTGTAATCGG-ATAGTGTATATCTGCATTCTATATGATGGAATTTGTTAAAAAATGGGGTGAACAAAAAAA]

[+] EMBL CF305399             [GACACTGACATGGACTGAGGAGTAGAAAAGCTTTGCCGCATCGCCGCTCTCGACGTCGCCCCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCG CCAATTGCCAGATAATACAAACATTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAA GGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCAGCAGGACCCTGGGCTGGCACGCCAGATCCTATCAATGACAGTTCAGTGAAAAGTAGTCTTTTTCTATCTTTGTGAGTTTATTTTGTCGAATGCAATGCTAGAATTTGTTAATTCGACACAACTTGCTTTTGCTCCTCCTGTTATGTCTCTGGTGCTTCGCTGTAATCGG ATAGTGTATATCTGCATTCTATATGATGGAATTTGTTAAAAAA                 ]
[-] EMBL CF328460             [                                                                                                                                                                                                                 GTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCG CCAATTGCCAGATAATACAAACACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAA GGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCAGCAGGACCCTGGGCTGGCACGCCAGGTCCTATCAATGACAGTTCAGTGAAAAGTAGTCTTTTTCTATCTTTGTGAGTTTATTTTGTCGAATGCAATGCTAGAATTTGTTAATTCGACACAACTTGCTTTTGCTCCTCCTGTTATGTCTCTGGTGCTTCGCTGTAATCGG ATAGTGTATATCTGCATTCTATATGATGGAATTTGTTAGCTGATGGGGTGAACAAAAAAA]
[-] EMBL CF334147             [                                                                                                                                                                                                                 GTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCCAATTGCCAGATAATACAAACACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAANGGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCAGCAGGACCCTGGGCTGGCACGCCAGATCCTATCAATGACAGTTCAGTGAAAAGTAGTCTTTTTCTATCTTTGTGAGTTTATTTTGTCGAATGCAATGCTAGAATTTGTTAATTCGACACAACTTGCTTTTGCTCCTCCTGTTATGTCTCTGGTGCTTCGCTGTAATCGGAATAGTGTATATCTGCATTCTATATGATGGAATTTGTTAAAAAAaa               ]




>consensus_7660#0
GACACTGACATGGACTGAGGAGTAGAAAAGCTTTGCCGCATCGCCGCTCTCGACGTCGCC
CCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTC
CACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGG
ATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGT
GAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACAAAC
ACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAG
CAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAA
TATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCAGCAGGAC
CCTGGGCTGGCACGCCAGATCCTATCAATGACAGTTCAGTGAAAAGTAGTCTTTTTCTAT
CTTTGTGAGTTTATTTTGTCGAATGCAATGCTAGAATTTGTTAATTCGACACAACTTGCT
TTTGCTCCTCCTGTTATGTCTCTGGTGCTTCGCTGTAATCGGATAGTGTATATCTGCATT
CTATATGATGGAATTTGTTAAAAAATGGGGTGAACAAAAAAA

consensusID : consensus_7660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 531
fasta sequence

                              [GAAGGAGTAGAAAATATGGGCTGGAGAATTTGGGTTTGAGCCCAAAGCACCCCAAAAAAGAGAACTGGTACAGGTAGCCACCGAGAAGCGCCGCCGCATCGCCGCTCTCGACGTCGCCCCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACAAACACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCA]

[+] EMBL CF328459             [GAAGGAGTAGAAAATATGGGCTGGAGAATTTGGGTTTGAGCCCAAAGCACCCCAAAAAAGAGAACTGGTACAGGTAGCCACCGAGAAGCGCCGCCGCATCGCCGCTCTCGACGTCGCCCCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACAAACACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCA]
[+] EMBL CF334148             [                                                                                                               CGTCGCCCCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACAAACACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAATATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCA]




>consensus_7660#1
GAAGGAGTAGAAAATATGGGCTGGAGAATTTGGGTTTGAGCCCAAAGCACCCCAAAAAAG
AGAACTGGTACAGGTAGCCACCGAGAAGCGCCGCCGCATCGCCGCTCTCGACGTCGCCCC
CTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTCCA
CTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGGAT
GATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGTGA
AAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACAAACAC
TTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAGCA
AGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAATA
TCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7660#0      ------------------------------------------------------------
consensus_7660#1      GAAGGAGTAGAAAATATGGGCTGGAGAATTTGGGTTTGAGCCCAAAGCACCCCAAAAAAG 60
                                                                                  

consensus_7660#0      GACACTGACATGGACTGAGGAGTAGAAAAGCTTTGCCGCATCGCCGCTCTCGACGTCGCC 60
consensus_7660#1      AGAACTGGTACAGGT--AGCCACCGAGAAGCGCCGCCGCATCGCCGCTCTCGACGTCGCC 118
                         ****  *  *    **     ** ****   **************************

consensus_7660#0      CCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTC 120
consensus_7660#1      CCCTTCCCGATTCGATTCCGCCTTGCCGGCGGCTAGGGTTTCTCGGCTCCTGCTCCTCTC 178
                      ************************************************************

consensus_7660#0      CACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGG 180
consensus_7660#1      CACTCCCCTACCATGGCGGACGAAGCCAACCGAGCGGCTTTCGTGGAGCTGCAGGGTCGG 238
                      ************************************************************

consensus_7660#0      ATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGT 240
consensus_7660#1      ATGATCGACACCACCGGGAAGATCAAGCAGTTGCAAACTCAGATGCGCTCTAAAGAGGGT 298
                      ************************************************************

consensus_7660#0      GAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACAAAC 300
consensus_7660#1      GAAAAGAAGCGTGCTTACCTCACACTGGAGGAACTTCGCCAATTGCCAGATAATACAAAC 358
                      ************************************************************

consensus_7660#0      ACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAG 360
consensus_7660#1      ACTTACAAGACTGTTGGTAAAGTATTTATTTTGGAGCCAAAATCACTCCTGCTGAATGAG 418
                      ************************************************************

consensus_7660#0      CAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAA 420
consensus_7660#1      CAAGAACAAAAGCTTAATGACAGTGAAAGTGCAATAGCATCGATGCAGACTTCCAAGGAA 478
                      ************************************************************

consensus_7660#0      TATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCAGCAGGAC 480
consensus_7660#1      TATCTTGAGAAGCAGTTGGCAGAAGTGGAGAACAACATAAGAGAGCTACTTCA------- 531
                      *****************************************************       

consensus_7660#0      CCTGGGCTGGCACGCCAGATCCTATCAATGACAGTTCAGTGAAAAGTAGTCTTTTTCTAT 540
consensus_7660#1      ------------------------------------------------------------
                                                                                  

consensus_7660#0      CTTTGTGAGTTTATTTTGTCGAATGCAATGCTAGAATTTGTTAATTCGACACAACTTGCT 600
consensus_7660#1      ------------------------------------------------------------
                                                                                  

consensus_7660#0      TTTGCTCCTCCTGTTATGTCTCTGGTGCTTCGCTGTAATCGGATAGTGTATATCTGCATT 660
consensus_7660#1      ------------------------------------------------------------
                                                                                  

consensus_7660#0      CTATATGATGGAATTTGTTAAAAAATGGGGTGAACAAAAAAA 702
consensus_7660#1      ------------------------------------------