These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence [CGTGACCTCGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACTACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGC-GGGTTCGGGTTCGTCAACTTCGAGGACAACGAGTC-GGTGAACGCCGCCATCCACGGCATGAAC-GGCCAGGACATCGGCGGCCGCAAGGTCACCGTCGCGCGGGCCCAGATGCGCCCCCGCCGCTGGAGGGCGTGACCGCGCCGCCGGCGGACGGCCGGCCGGCGGCGAGGAGGTCGACCTGGATGAGCGGAGAAGACTCTACCTACCTACCTACCCTAAGCTATCTATGCTGCAGATCTACTAGCTAGTTTTAGTCATTCGTCGTGTTGGTAGTTTGGTTAATTAGGGTTTAAGCGGTGGATGCTTAATTAATTAATCAGTCTCTGTTGGTAATCTCCTGGATATGCAAGCTTAGGGCCTTATTAGGATATGTTGTTTAATTAGGTGTGTGTTTATGCTTGTAATCATCAATTGCAGTCTGCACTCTGCAGCACGTACCTGAGTGTGTGTAAGTTTGATGGCTAGCGTTTATGTTAAGAATGACTCT] [+] EMBL AK069616 [CGTGACCTCGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACTACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGC GGGTTCGGGTTCGTCAACTTCGAGGACAACGAGTC GGTGAACGCCGCCATCCACGGCATGAAC GGCCAGGACATCGGCGGCCGCAAGGTCACCGTCGCGCGGGCCCAGATGCGCCCCCGCCGCTGGAGGGCGTGACCGCGCCGCCGGCGGACGGCCGGCCGGCGGCGAGGAGGTCGACCTGGATGAGCGGAGAAGACTCTACCTACCTACCTACCCTAAGCTATCTATGCTGCAGATCTACTAGCTAGTTTTAGTCATTCGTCGTGTTGGTAGTTTGGTTAATTAGGGTTTAAGCGGTGGATGCTTAATTAATTAATCAGTCTCTGTTGGTAATCTCCTGGATATGCAAGCTTAGGGCCTTATTAGGATATGTTGTTTAATTAGGTGTGTGTTTATGCTTGTAATCATCAATTGCAGTCTGCACTCTGCAGCACGTACCTGAGTGTGTGTAAGTTTGATGGCTAGCGTTTATGTTAAGAATGACTCT] [+] EMBL AU091329 [ cgGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGTGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACTACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGC GGGTTCGGGTTCGTCAACTTCGAGGACAACGAGTC GGTGAACGCCGCCATCCACGGCATGAAC GGC ] [+] EMBL C74173 [ TCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGTGCTATGGCGGNGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTNGGCAACCTGNCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGNCGACTACGG GCCATCAGT ] [+] EMBL C74029 [ tgtgcgatgTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGNACTACTTCGCCGACTACGGNGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGANGCCACGCGGGGTTCGGGTTCGTCAACTTCGAGGACAACGANTCGGGTGAACGCCGCCATCCANGGCATGAACGGGCCA ] consensusID : consensus_7668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 109 fasta sequence [GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTGGCAGCAGATAGAGTCNTTCTTAACATAAACNCTAGCCATC] [+] EMBL AU225179 [GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTGGCAGCAGATAGAGTCNTTCTTAACATAAACNCTAGCCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7668#0 CGTGACCTCGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTA 60 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 CTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTA 120 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 TGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGT 180 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 ACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACT 240 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 ACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGCGGGTTCG 300 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 GGTTCGTCAACTTCGAGGACAACGAGTCGGTGAACGCCGCCATCCACGGCATGAACGGCC 360 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 AGGACATCGGCGGCCGCAAGGTCACCGTCGCGCGGGCCCAGATGCGCCCCCGCCGCTGGA 420 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 GGGCGTGACCGCGCCGCCGGCGGACGGCCGGCCGGCGGCGAGGAGGTCGACCTGGATGAG 480 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 CGGAGAAGACTCTACCTACCTACCTACCCTAAGCTATCTATGCTGCAGATCTACTAGCTA 540 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 GTTTTAGTCATTCGTCGTGTTGGTAGTTTGGTTAATTAGGGTTTAAGCGGTGGATGCTTA 600 consensus_7668#1 ------------------------------------------------------------ consensus_7668#0 ATTAATTAATCAGTCTCTGTTGGTAATCTCCTGGATATGCAAGCTTAGGGCCTTATTAGG 660 consensus_7668#1 -------------------------------------------------GCCGCTTTT-- 9 *** ** consensus_7668#0 ATATGTTGTTTAATTAGGTGTGTGTTTATGCTTGTAATCATCAATTGCAGTCTGCACTCT 720 consensus_7668#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTG 69 * * ** *** ** * * * *** * ** * * * ** * * ** consensus_7668#0 GCAGCACGTACCTGAGTGTGTGTAAGTTTGATGGCTAGCGTTTATGTTAAGAATGACTCT 780 consensus_7668#1 GCAGCAGATA---GAGTCNTTCTTAACATAAACNCTAGCCATC----------------- 109 ****** ** **** * * * * * ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||