These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 916 fasta sequence [GCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCTTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGAATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAATGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGAACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTGTTAAGAGTTGAACATT] [+] EMBL CF328007 [GCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCTTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTC ] [+] EMBL CB650681 [ TGGTTGACTTGCAAGCTCCTTAAAATGAAAGCTCCAAAACAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACCCTCAAGAACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGAATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAATGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAA ] [-] EMBL CF328006 [ TGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAGTGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGAACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTGTTAAGAGTTGAACATT] consensusID : consensus_7670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [TTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCCTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGGGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGGGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAAATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGGGAACCATCAGCTTTGCAATGGCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGGGGCGATGCACTGTCCGATCCCTGCGTGGCCATCTTGGTTCTCATGCCCGAAACCACTCGGGGAGGAAAACCCAGAGGTTCCTACTGTGCCGCCGGAATGCATACGCCGAATCCGGCGCGGTCGCCTGGCTCCCAGCCCCC] [+] EMBL CA763021 [TTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCCTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGGGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGGGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAAATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGGGAACCATCAGCTTTGCAATGGCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGGGGCGATGCACTGTCCGATCCCTGCGTGGCCATCTTGGTTCTCATGCCCGAAACCACTCGGGGAGGAAAACCCAGAGGTTCCTACTGTGCCGCCGGAATGCATACGCCGAATCCGGCGCGGTCGCCTGGCTCCCAGCCCCC] consensusID : consensus_7670#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [ATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGCATGCTAAGTGCCTGTTTGCCAGGATAGAATGCATCATCCAATTTTGTTATTGACATAATGAGATTAGCAAAGCAGGTAGTGTAGATAAAGTCAAAATCTTACTGGGCAGTACTCATCAGTGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGCACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTA] [-] EMBL AU181753 [ATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGCATGCTAAGTGCCTGTTTGCCAGGATAGAATGCATCATCCAATTTTGTTATTGACATAATGAGATTAGCAAAGCAGGTAGTGTAGATAAAGTCAAAATCTTACTGGGCAGTACTCATCAGTGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGCACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7670#0 GCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAA 60 consensus_7670#1 ----------------------TTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAA 38 consensus_7670#2 --------ATCCCTGCTGGACCATCTTGGTTCTCATGCT-CGAAACCACTTCTGGAGGAA 51 * ** ** * ** * * * * *** * ** consensus_7670#0 GCTTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATAT 120 consensus_7670#1 GCCTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATAT 98 consensus_7670#2 TACCCAGAGTTCCATA-CTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGC 110 ** * * * * ** * ** * ** * ** * * *** * consensus_7670#0 CAGCTCAGC-TCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGC 179 consensus_7670#1 CAGCTCAGC-TCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGC 157 consensus_7670#2 ATGCTAAGTGCCTGTTTGC-CAGG---ATAGAATGCAT-CATCCAAT-TTTGTTATTGAC 164 *** ** **** * **** * * ** ** ** *** * * **** * consensus_7670#0 GAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCT 239 consensus_7670#1 GAAAGGGGGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCT 217 consensus_7670#2 ATAATGAGATT--AGCAAAGCAGGTAGTGTAGATAAAGTCAAAATCTTAC-TGGGCAGTA 221 ** * * * ** *** * * * *** **** ** ** * consensus_7670#0 CTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAA 299 consensus_7670#1 CTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAA 277 consensus_7670#2 CTCAT------CAGTGATTTCTTTGAGAGACTTGC-TGTGCTT----CTC----TTCAAG 266 *** * * * * * ***** * ** * * ** *** *** consensus_7670#0 ACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCG 359 consensus_7670#1 ACTCAAAACTGGGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCG 337 consensus_7670#2 TATCAGAAGTG----CTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTG 322 *** ** ** * * *** ** * * *** * * ** *** * consensus_7670#0 TGTAGATGTAGATCAGTTGT---CGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTT 416 consensus_7670#1 TGTAGATGTAGATCAGTTGT---CGTTTTCGTTTTAGGGCATCAAATGTGGAGAGCCCTT 394 consensus_7670#2 CATACTCTTCAGTCAGCCAAAAGCACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACAT 382 ** * **** * * * *** **** * * * * consensus_7670#0 GTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTT 476 consensus_7670#1 GTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGGGAACCATCAGCTT 454 consensus_7670#2 ACTCTCC---ATTAC---TGAATGAACAGCATTCACGCCGTAGCAGAAGACTA------- 429 ***** ** * ** ** * ** * ** * * ** * consensus_7670#0 TGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGAT 536 consensus_7670#1 TGCAATGGCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGAT 514 consensus_7670#2 ------------------------------------------------------------ consensus_7670#0 GTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGA 596 consensus_7670#1 GTCATCTTGGGGCGATGCACTGTCCGATCCCTGCGTGGCCATCTTGGTTCTCATGCCCGA 574 consensus_7670#2 ------------------------------------------------------------ consensus_7670#0 AACCACTTCTGGAGGAATACCCAGAGTTCCATACT-TGTCGTCGCAATACATTGTGCTGA 655 consensus_7670#1 AACCACTCGGGGAGGAAAACCCAGAGGTTCCTACTGTGCCGCCGGAATGCATACGCCGAA 634 consensus_7670#2 ------------------------------------------------------------ consensus_7670#0 TTCTGAATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAATGATTTCTTTGAGAG 715 consensus_7670#1 TCCGGCGCGGTCGCCTGGCTCCCAGCCCCC------------------------------ 664 consensus_7670#2 ------------------------------------------------------------ consensus_7670#0 ACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTT 775 consensus_7670#1 ------------------------------------------------------------ consensus_7670#2 ------------------------------------------------------------ consensus_7670#0 CGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGAACCAGTGCTCTAGCTCAT 835 consensus_7670#1 ------------------------------------------------------------ consensus_7670#2 ------------------------------------------------------------ consensus_7670#0 CCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAA 895 consensus_7670#1 ------------------------------------------------------------ consensus_7670#2 ------------------------------------------------------------ consensus_7670#0 GACTGTTAAGAGTTGAACATT 916 consensus_7670#1 --------------------- consensus_7670#2 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||