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Oryza sativa
cluster # 7680 cluster # 7680       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7680#0 length = 963 sequences # 2  
consensus_7680#1 length = 667 sequences # 2  
consensus_7680#2 length = 408 sequences # 1  

consensusID : consensus_7680#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 963
fasta sequence
                              [CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGC-GGCCACCGCGCTCGTCGG--CCGCACCG-AGTCG-TTC-TCCACCGCGCT--GGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTT]

[+] EMBL AK063653             [CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGC GGCCACCGCGCTCGTCGG  CCGCACCG AGTCG TTC TCCACCGCGCT  GGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTT]
[+] EMBL AU081009             [                     GGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGG GCCGGCGGTCGACTACTTCGGCAGGGAGTCGTTCTTNGCGTCGTCCCGCCGCGACTACANCGACGCGGCNGGCCACCGGGTTNGTCGGGCCCGAACCGAATTCGTTTCTTCAACCGGGGTTGGGACCcgctt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_7680#0 CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTG GTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGC CGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCAT CGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCA GGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCT TGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCG AGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCAC CGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAA GGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACG GGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGA AGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGC GGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACG CGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATG GCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGT TTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCC ATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCT CTT



consensusID : consensus_7680#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence
                              [GGGAAACCGAGGCATTCTTCTCCTCCTCACGAAGCTTCTCCTCCGACTCCTCCGAGTTCTACACCAAGAAGAAGAAGAGGAACAAGCCCAAGAAGAAGTCCCCCTCCACCGCATCGTCCAAGGCGGC-GCCGCCGCG---CCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGA-CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTTTGTGTTGATTTA]

[+] EMBL OS07592A             [GGGAAACCGAGGCATTCTTCTCCTCCTCACGAAGCTTCTCCTCCGACTCCTCCGAGTTCTACACCAAGAAGAAGAAGAGGAACAAGCCCAAGAAGAAGTCCCCCTCCACCGCATCGTCCAAGGCGGC GCCGCCGCG   CCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGA CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTTTGTGTTGATTTA]
[+] EMBL BE230220             [                                                                                                                    TCCAAGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGTGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAAT                                         ]


>consensus_7680#1 GGGAAACCGAGGCATTCTTCTCCTCCTCACGAAGCTTCTCCTCCGACTCCTCCGAGTTCT ACACCAAGAAGAAGAAGAGGAACAAGCCCAAGAAGAAGTCCCCCTCCACCGCATCGTCCA AGGCGGCGCCGCCGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAA GCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCG CCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTC GCGGGACCCGTACNCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCT GTTCGGCGCGGCGGACTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGC CACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATAGCGGCTAG CTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAA TTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCA NTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTTTGTGT TGATTTA



consensusID : consensus_7680#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence
                              [TACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCGAGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGTCGCCGAAGAAGGAGGATGCGGCGGCGGCGGCGGCGGCGGCCAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGCTTCCACTACCACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGGAAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACCCCTACGGCTTCACAACGTCCGACGACGCCGACACCGACGGCGACGACGTCTTCAGCAGCGACGCC]

[+] EMBL AU081010             [TACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCGAGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGTCGCCGAAGAAGGAGGATGCGGCGGCGGCGGCGGCGGCGGCCAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGCTTCCACTACCACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGGAAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACCCCTACGGCTTCACAACGTCCGACGACGCCGACACCGACGGCGACGACGTCTTCAGCAGCGACGCC]


>consensus_7680#2 TACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCC ACCGCGCTCGTCGGCCGCACCGAGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGC GGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGTCGCCGAAGAAGGAG GATGCGGCGGCGGCGGCGGCGGCGGCCAAGGAGAAGGAGATGACCACCGCTGCTGCTCGC GACGTTCAGGGCTTCCACTACCACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGC GGCTGCGGGAAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACCCCTACGGCTTCACAACG TCCGACGACGCCGACACCGACGGCGACGACGTCTTCAGCAGCGACGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7680#0      CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTG 60
consensus_7680#1      ------------------------------------------------------------
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      GTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGC 120
consensus_7680#1      ------------------------------------------------------------
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      CGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCAT 180
consensus_7680#1      ------------------------------------------------------------
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      CGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCA 240
consensus_7680#1      ------------------------------------------------------------
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      GGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCT 300
consensus_7680#1      ------------------------------------------GGGAAACCGAGGCATTCT 18
consensus_7680#2      --------------------------------------TACTGCGGCAGGGAGTCGTTCT 22
                                                                * *  *  *** * ****

consensus_7680#0      TGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCG 360
consensus_7680#1      TCTCCTCCTCACGAAGCTTCTCCTCCGACTC------CTCCGAGTT------CTACACCA 66
consensus_7680#2      TGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCG 82
                      *  * ** ** **  **  ** *  **** *      * *** * *      *  **** 

consensus_7680#0      AGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCAC 420
consensus_7680#1      AGAAG------AAGAAGAGGAACAAGCCCAA-----GAAGAAGTCCCCCTCCACCGC-AT 114
consensus_7680#2      AGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCAC 142
                      **  *      *    *  * **   * * *     *  *  *   * **** * ** * 

consensus_7680#0      CGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAA 480
consensus_7680#1      CGTCCAAGG-CGGCGCCGCCGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAA 173
consensus_7680#2      CGTCGAGGTTCTCCGTCGACGCGTCGCC--------GAAGAAGGAGGATGCGGCGGCGGC 194
                      **** * *  *  ** ** **** ****             * ** ** **  * *    

consensus_7680#0      GGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACG 540
consensus_7680#1      GGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACG 233
consensus_7680#2      GGCGGCGGCGGC-CAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGC- 252
                      ****   *** * *  ** ** ** **  * *  ** **   *  *** ***   ** * 

consensus_7680#0      GGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGA 600
consensus_7680#1      GGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGA 293
consensus_7680#2      --TTCCACTAC-CACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGG 309
                        **** *  *       *  ** **     ****   *****  **       **  * 

consensus_7680#0      AGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGG--TGGAGATGGTCGTCGG 658
consensus_7680#1      AGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGG--TGGAGATGGTCGTCGG 351
consensus_7680#2      AAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACC-CCTACGGCTTCACAACGTCCGACGA 368
                      *   **  *  * ** * *  * *   ***   *  * * **  *    * *  ** ** 

consensus_7680#0      -GCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGA 717
consensus_7680#1      -GCGGCAGCTGTTCGGCGCGGCGGA-CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGA 409
consensus_7680#2      CGCCGACACCGACGGCGACGACGT--CTTCAGCAGCGACGCC------------------ 408
                       ** *   * *   *   ** **   **  *** **  * **                  

consensus_7680#0      ACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCC 777
consensus_7680#1      ACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCC 469
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      ATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCG 837
consensus_7680#1      ATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCG 529
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      TGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTAC 897
consensus_7680#1      TGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTAC 589
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      TCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCT 957
consensus_7680#1      TCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCT 649
consensus_7680#2      ------------------------------------------------------------
                                                                                  

consensus_7680#0      CCTCTT------------ 963
consensus_7680#1      CCTCTTTGTGTTGATTTA 667
consensus_7680#2      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)