These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 963 fasta sequence [CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGC-GGCCACCGCGCTCGTCGG--CCGCACCG-AGTCG-TTC-TCCACCGCGCT--GGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTT] [+] EMBL AK063653 [CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGC GGCCACCGCGCTCGTCGG CCGCACCG AGTCG TTC TCCACCGCGCT GGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTT] [+] EMBL AU081009 [ GGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGG GCCGGCGGTCGACTACTTCGGCAGGGAGTCGTTCTTNGCGTCGTCCCGCCGCGACTACANCGACGCGGCNGGCCACCGGGTTNGTCGGGCCCGAACCGAATTCGTTTCTTCAACCGGGGTTGGGACCcgctt ] consensusID : consensus_7680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [GGGAAACCGAGGCATTCTTCTCCTCCTCACGAAGCTTCTCCTCCGACTCCTCCGAGTTCTACACCAAGAAGAAGAAGAGGAACAAGCCCAAGAAGAAGTCCCCCTCCACCGCATCGTCCAAGGCGGC-GCCGCCGCG---CCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGA-CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTTTGTGTTGATTTA] [+] EMBL OS07592A [GGGAAACCGAGGCATTCTTCTCCTCCTCACGAAGCTTCTCCTCCGACTCCTCCGAGTTCTACACCAAGAAGAAGAAGAGGAACAAGCCCAAGAAGAAGTCCCCCTCCACCGCATCGTCCAAGGCGGC GCCGCCGCG CCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGA CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTTTGTGTTGATTTA] [+] EMBL BE230220 [ TCCAAGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGTGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAAT ] consensusID : consensus_7680#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [TACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCGAGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGTCGCCGAAGAAGGAGGATGCGGCGGCGGCGGCGGCGGCGGCCAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGCTTCCACTACCACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGGAAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACCCCTACGGCTTCACAACGTCCGACGACGCCGACACCGACGGCGACGACGTCTTCAGCAGCGACGCC] [+] EMBL AU081010 [TACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCGAGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGTCGCCGAAGAAGGAGGATGCGGCGGCGGCGGCGGCGGCGGCCAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGCTTCCACTACCACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGGAAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACCCCTACGGCTTCACAACGTCCGACGACGCCGACACCGACGGCGACGACGTCTTCAGCAGCGACGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7680#0 CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTG 60 consensus_7680#1 ------------------------------------------------------------ consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 GTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGC 120 consensus_7680#1 ------------------------------------------------------------ consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 CGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCAT 180 consensus_7680#1 ------------------------------------------------------------ consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 CGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCA 240 consensus_7680#1 ------------------------------------------------------------ consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 GGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCT 300 consensus_7680#1 ------------------------------------------GGGAAACCGAGGCATTCT 18 consensus_7680#2 --------------------------------------TACTGCGGCAGGGAGTCGTTCT 22 * * * *** * **** consensus_7680#0 TGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCG 360 consensus_7680#1 TCTCCTCCTCACGAAGCTTCTCCTCCGACTC------CTCCGAGTT------CTACACCA 66 consensus_7680#2 TGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCG 82 * * ** ** ** ** ** * **** * * *** * * * **** consensus_7680#0 AGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCAC 420 consensus_7680#1 AGAAG------AAGAAGAGGAACAAGCCCAA-----GAAGAAGTCCCCCTCCACCGC-AT 114 consensus_7680#2 AGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCAC 142 ** * * * * ** * * * * * * * **** * ** * consensus_7680#0 CGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAA 480 consensus_7680#1 CGTCCAAGG-CGGCGCCGCCGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAA 173 consensus_7680#2 CGTCGAGGTTCTCCGTCGACGCGTCGCC--------GAAGAAGGAGGATGCGGCGGCGGC 194 **** * * * ** ** **** **** * ** ** ** * * consensus_7680#0 GGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACG 540 consensus_7680#1 GGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACG 233 consensus_7680#2 GGCGGCGGCGGC-CAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGC- 252 **** *** * * ** ** ** ** * * ** ** * *** *** ** * consensus_7680#0 GGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGA 600 consensus_7680#1 GGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGA 293 consensus_7680#2 --TTCCACTAC-CACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGG 309 **** * * * ** ** **** ***** ** ** * consensus_7680#0 AGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGG--TGGAGATGGTCGTCGG 658 consensus_7680#1 AGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGG--TGGAGATGGTCGTCGG 351 consensus_7680#2 AAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACC-CCTACGGCTTCACAACGTCCGACGA 368 * ** * * ** * * * * *** * * * ** * * * ** ** consensus_7680#0 -GCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGA 717 consensus_7680#1 -GCGGCAGCTGTTCGGCGCGGCGGA-CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGA 409 consensus_7680#2 CGCCGACACCGACGGCGACGACGT--CTTCAGCAGCGACGCC------------------ 408 ** * * * * ** ** ** *** ** * ** consensus_7680#0 ACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCC 777 consensus_7680#1 ACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCC 469 consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 ATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCG 837 consensus_7680#1 ATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCG 529 consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 TGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTAC 897 consensus_7680#1 TGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTAC 589 consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 TCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCT 957 consensus_7680#1 TCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCT 649 consensus_7680#2 ------------------------------------------------------------ consensus_7680#0 CCTCTT------------ 963 consensus_7680#1 CCTCTTTGTGTTGATTTA 667 consensus_7680#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||