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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 963 fasta sequence
[CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGC-GGCCACCGCGCTCGTCGG--CCGCACCG-AGTCG-TTC-TCCACCGCGCT--GGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTT]
[+] EMBL AK063653 [CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGC GGCCACCGCGCTCGTCGG CCGCACCG AGTCG TTC TCCACCGCGCT GGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTT]
[+] EMBL AU081009 [ GGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTGGTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGCCGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCATCGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCAGGGCGCTGCTCGCCGCGGACGCGG GCCGGCGGTCGACTACTTCGGCAGGGAGTCGTTCTTNGCGTCGTCCCGCCGCGACTACANCGACGCGGCNGGCCACCGGGTTNGTCGGGCCCGAACCGAATTCGTTTCTTCAACCGGGGTTGGGACCcgctt ]
consensusID : consensus_7680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence
[GGGAAACCGAGGCATTCTTCTCCTCCTCACGAAGCTTCTCCTCCGACTCCTCCGAGTTCTACACCAAGAAGAAGAAGAGGAACAAGCCCAAGAAGAAGTCCCCCTCCACCGCATCGTCCAAGGCGGC-GCCGCCGCG---CCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGA-CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTTTGTGTTGATTTA]
[+] EMBL OS07592A [GGGAAACCGAGGCATTCTTCTCCTCCTCACGAAGCTTCTCCTCCGACTCCTCCGAGTTCTACACCAAGAAGAAGAAGAGGAACAAGCCCAAGAAGAAGTCCCCCTCCACCGCATCGTCCAAGGCGGC GCCGCCGCG CCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGA CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCTCCTCTTTGTGTTGATTTA]
[+] EMBL BE230220 [ TCCAAGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGTGGCGTCAGGGACGGGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAAT ]
consensusID : consensus_7680#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[TACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCGAGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGTCGCCGAAGAAGGAGGATGCGGCGGCGGCGGCGGCGGCGGCCAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGCTTCCACTACCACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGGAAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACCCCTACGGCTTCACAACGTCCGACGACGCCGACACCGACGGCGACGACGTCTTCAGCAGCGACGCC]
[+] EMBL AU081010 [TACTGCGGCAGGGAGTCGTTCTTGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCGAGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCACCGTCGAGGTTCTCCGTCGACGCGTCGCCGAAGAAGGAGGATGCGGCGGCGGCGGCGGCGGCGGCCAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGCTTCCACTACCACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGGAAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACCCCTACGGCTTCACAACGTCCGACGACGCCGACACCGACGGCGACGACGTCTTCAGCAGCGACGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7680#0 CGTGCGACTGGCTGAGCTACTGGTGGTAGCTGCCAATGGCGATGGATCATCGTGGTGGTG 60
consensus_7680#1 ------------------------------------------------------------
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 GTGGTGGTGGTGGGAGGAGCAGCAGCCGGCTGCGGGACAGGCTGGCGAGGATGTTCCGGC 120
consensus_7680#1 ------------------------------------------------------------
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 CGGGCGCGCTGCTCCGGTCGACGTGCAACAACCACGCCACCGCGTCGACGTCCTCGTCAT 180
consensus_7680#1 ------------------------------------------------------------
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 CGTCGTCGGCGGCGGCGGCGGCGGGTGGGGTGGTGACGGCGTCCGCGTGCTCGTCCAGCA 240
consensus_7680#1 ------------------------------------------------------------
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 GGGCGCTGCTCGCCGCGGACGCGGCGGCGGCGGTCGACTACTGCGGCAGGGAGTCGTTCT 300
consensus_7680#1 ------------------------------------------GGGAAACCGAGGCATTCT 18
consensus_7680#2 --------------------------------------TACTGCGGCAGGGAGTCGTTCT 22
* * * *** * ****
consensus_7680#0 TGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCG 360
consensus_7680#1 TCTCCTCCTCACGAAGCTTCTCCTCCGACTC------CTCCGAGTT------CTACACCA 66
consensus_7680#2 TGGCGTCGTCCCGCCGCGACTACAGCGACGCGGCGGCCACCGCGCTCGTCGGCCGCACCG 82
* * ** ** ** ** ** * **** * * *** * * * ****
consensus_7680#0 AGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCAC 420
consensus_7680#1 AGAAG------AAGAAGAGGAACAAGCCCAA-----GAAGAAGTCCCCCTCCACCGC-AT 114
consensus_7680#2 AGTCGTTCTCCACCGCGCTGGACCGCCTCCACCGCCGCGGCGGCGGCACTCCGCTGCCAC 142
** * * * * ** * * * * * * * **** * ** *
consensus_7680#0 CGTCGAGGTTCTCCGTCGACGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAA 480
consensus_7680#1 CGTCCAAGG-CGGCGCCGCCGCGCCGCCTCCTCCTCCTCCGACGACGAGGCACCAGATAA 173
consensus_7680#2 CGTCGAGGTTCTCCGTCGACGCGTCGCC--------GAAGAAGGAGGATGCGGCGGCGGC 194
**** * * * ** ** **** **** * ** ** ** * *
consensus_7680#0 GGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACG 540
consensus_7680#1 GGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACG 233
consensus_7680#2 GGCGGCGGCGGC-CAAGGAGAAGGAGATGACCACCGCTGCTGCTCGCGACGTTCAGGGC- 252
**** *** * * ** ** ** ** * * ** ** * *** *** ** *
consensus_7680#0 GGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGA 600
consensus_7680#1 GGTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGA 293
consensus_7680#2 --TTCCACTAC-CACCACCACCGCCGCCATGGCAGCCTCGGCGGCGGCGGCGGCTGCGGG 309
**** * * * ** ** **** ***** ** ** *
consensus_7680#0 AGCGGTCGCGGGACCCGTACGCCGACTTCCGGTCGTCCATGG--TGGAGATGGTCGTCGG 658
consensus_7680#1 AGCGGTCGCGGGACCCGTACNCCGACTTCCGGTCGTCCATGG--TGGAGATGGTCGTCGG 351
consensus_7680#2 AAGAGTGACAAGGCCAGGAGGCTGCTCTCCAACC-CCTACGGCTTCACAACGTCCGACGA 368
* ** * * ** * * * * *** * * * ** * * * ** **
consensus_7680#0 -GCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGTCGTACCTCTCCCTGA 717
consensus_7680#1 -GCGGCAGCTGTTCGGCGCGGCGGA-CTGGAGCNGCTGCTCCGGTCGTACCTCTCCCTGA 409
consensus_7680#2 CGCCGACACCGACGGCGACGACGT--CTTCAGCAGCGACGCC------------------ 408
** * * * * ** ** ** *** ** * **
consensus_7680#0 ACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCC 777
consensus_7680#1 ACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCC 469
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 ATGGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCG 837
consensus_7680#1 ATAGCGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCG 529
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 TGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTAC 897
consensus_7680#1 TGTTTAATTAATTAGCTCAGTCCCAGGATGATTAATCACTGAGATTAGCCAGAGTACTAC 589
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 TCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCT 957
consensus_7680#1 TCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTCAGAGTTTAATTAATCT 649
consensus_7680#2 ------------------------------------------------------------
consensus_7680#0 CCTCTT------------ 963
consensus_7680#1 CCTCTTTGTGTTGATTTA 667
consensus_7680#2 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||