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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1186 fasta sequence
[AGATGGAGAGGAAGCGTNGACTCGTCGTCGGGGGCAGCGGCTACCTGGGCCAGCACCTCCTCGCCGCGCTCGCTGCCGGCGGCGAGGT-CGACGTCGCCTTCACCCACCACCGCGACACCCCGCCGCAGCCGCTCCTGCACGCGCTCCCCGGGCTTCGCGCCTTCAGAGTAGACCTCCGCTCCGGCGA-TGGCCTCCGCGCCGTCTCCGAGTCCTTCGGCCAGCCGCATGTGATTGTGAACTGTGCTGCAATCTCGGTACCTCGGCAATGCGAAACGGATCCTGC-TGCTGCTATGGCTACT-AATGTACCTTCATCACTTGTCACTTGGTTGTTAAGCTTTGGGAATGACAACACTCTTCTTATCCATCTCTCAACAGATCAAGTTTACGAGGGAGTAAAATCCTTCT-ACAAAGAGGATGATGAGACCTTGCCAGTGAACATGTACGGAAAATCTAAAGTTGCTGCAGAGAAGTTTATTATTGAACAATGCTCAAACTATGCAATCTTGAGAAGCAGTATTATTTATGGGCCACAAACAATTTCTCCTGTGGCAAAATCTCTTCCAATTCAGTGGATGGATAGTGTTCTTTCACAAGGCCAACAAGTTCAATTCTTTAATGATGAGTTCCGGTGTCCTGTTTATGTAAAAGATATGGTGGATGTAGTGTTGTCTTTGACAAAATCATGGTTAGCAGATGGTAAAGCTGTTCAAGTACTCCTGAATGTCGGTGGACCAGATAGAGTCTCAAGACTGCAGATGGCTGAATCTGTTGCTGATGTTCGTGGATATAGTCATTCTATAATCAAATCTGTATCTGCTTCATCGGTTGACCGGGGTGTAGCTTCTCCACCAGACATATCCATGGATATCACCAAACTAACCCAAATGCTTGGTATCAAGCCAATTTCATTTCAAGATGGAGTCAGAGCTACACTTGCTGCAGAAGCTAGTACATGACACTTTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAAAGAGCCACTTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGTAACTTTTCGACGGTGTGAAAAAGGAAATTTTGCGTTCACCCGACATCAATATCATGTATTACTGTCTGGTTTTATACTTCCGAATAAAATCATCAAAAAAAAAAAA]
[+] EMBL AK070787 [AGATGGAGAGGAAGCGTGTGCTCGTCGTCGGGGGCAGCGGCTACCTGGGCCAGCACCTCCTCGCCGCGCTCGCTGCCGGCGGCGAGGT CGACGTCGCCTTCACCCACCACCGCGACACCCCGCCGCAGCCGCTCCTGCACGCGCTCCCCGGGCTTCGCGCCTTCAGAGTAGACCTCCGCTCCGGCGA TGGCCTCCGCGCCGTCTCCGAGTCCTTCGGCCAGCCGCATGTGATTGTGAACTGTGCTGCAATCTCGGTACCTCGGCAATGCGAAACGGATCCTGC TGCTGCTATGGCTACT AATGTACCTTCATCACTTGTCACTTGGTTGTTAAGCTTTGGGAATGACAACACTCTTCTTATCCATCTCTCAACAGATCAAGTTTACGAGGGAGTAAAATCCTTCT ACAAAGAGGATGATGAGACCTTGCCAGTGAACATGTACGGAAAATCTAAAGTTGCTGCAGAGAAGTTTATTATTGAACAATGCTCAAACTATGCAATCTTGAGAAGCAGTATTATTTATGGGCCACAAACAATTTCTCCTGTGGCAAAATCTCTTCCAATTCAGTGGATGGATAGTGTTCTTTCACAAGGCCAACAAGTTCAATTCTTTAATGATGAGTTCCGGTGTCCTGTTTATGTAAAAGATATGGTGGATGTAGTGTTGTCTTTGACAAAATCATGGTTAGCAGATGGTAAAGCTGTTCAAGTACTCCTGAATGTCGGTGGACCAGATAGAGTCTCAAGACTGCAGATGGCTGAATCTGTTGCTGATGTTCGTGGATATAGTCATTCTATAATCAAATCTGTATCTGCTTCATCGGTTGACCGGGGTGTAGCTTCTCCACCAGACATATCCATGGATATCACCAAACTAACCCAAATGCTTGGTATCAAGCCAATTTCATTTCAAGATGGAGTCAGAGCTACACTTGCTGCAGAAGCTAGTACATGACACTTTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAAAGAGCCACTTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGTAACTTTTCGACGGTGTGAAAAAGGAAATTTTGCGTTCACCCGACATCAATATCATGTATTACTGTCTGGTTTTATACTTCCGAATAAAATCATCA ]
[+] EMBL OSS10985A [ GTNGACTCGTCGTCGGGGGCAGCGGCTACCTGGGCCAGCACCTCCTCGCCGCGCTCGCTGCCGGCGGCGAGGT CGACGTCGCCTTCACCCACCACCGCGACACCCCGCCGCAGCCGCTCCTGCACGCGCTCCCCGGGCTTCGCGCCTTCAGAGTAGACCTCCGCTCCGGCGA TGGCCTCCGCGCCGTCTCCGAGTCCTTCGGCCAGCCGCATGTGATTGTGAACTGTGCTGCAATCTCGGTACCTCGGCAATGNGAAACGGATCCTGC TGCTGCTATGGCTACT AATGTACCTTCATCACTTGTCACTTGGTTGTTAAGCTTTGGGAATGACAACANTCTTCTTATCCATCTCTCAACAGATCAAGTTTACGAGGGAGTAAAATCCTT T TCAAAGAGGNTGATGAGACCTTGCCAGTGAACATG ACGGNAAATta ]
[+] EMBL OSS15252A [ NGACTCGTCGTCGNNGGCAGCGGCTACCTGGGCCAGCACCTCCTCGCCGCGCTCGCTGCCGGCG GAGNTNCGACGTCGCCTTCACCCACCACCGCGACACCCCNCCGCAGCCGCTCCTGCACGCGCTCCCCGGGCTTCGCGCCTTCAGAGTAGACCTNCGCTCCGGCGANTGGCCTCCGCGACGTCTCCGAGTCCTTCGGCCAGCCGCATGTGATTGTGAACTGTGCTGCAATCTCGGTACCTCGGCAATGCGAAACGGATCCTGCTTGCTGCTATGGCTACTAAATGTACCTTCATCACTTGTCACTTGGTTGTTAAGCTTTGGGAATGACAACACTCTTNTTATCCATCTATCAACAGATCAAGTTTACGAGGGAGTAAAATCCTTCTNACAAAG ]
[+] EMBL AU086006 [ TTTCACAAGNCCAACAAGTTCAATTCTTTAATGATGAGTNCCGGTGTCCTGTTTATGTAAAAGATATGGTGGATGTAGTGTTGTCTTTGANAAAATCATGGTTANCAGATGGTAAAGCTGTTCAAGTACTCCTGAATGTCGGTGGACCAGATAGAGTCTCAAGACTGCAGATGGCTGAANCTGTTGCTGATGTTCGTGGATATAGTCATTCTATAATCAAATCTGTATCTGCTTCATCGGTTGNCCGGGGTGTAGCTTCTCCACCAGACATATCCATGGATATCNCCAAACTAACCCAAATGCTTGGTATCAAGCCAATTTCATTTCAAGATGGAGTCAGAGCTACACTTGCTGCAGAAGCTAGTACATGACACTTTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAAAGAGCCACTTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGTAACTTTTCGACGGTGTGAAAAAGGAAATTTTGCGTTCACCCGACATCAATATCATGTATTACTGTCTGGTTTTATACTTCCGAATAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence
[GCTGCAGAAGCTAGTACATGACACTTTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAAAGAGCCACTTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGTAACTTTTCGACGGTGTGAAAAAGGAAATTTTGCGTTCACCCGACATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT]
[+] EMBL CF327046 [GCTGCAGAAGCTAGTACATGACACTTTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAAAGAGCCACTTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGTAACTTTTCGACGGTGTGAAAAAGGAAATTTTGCGTTCACCCGACATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7683#0 AGATGGAGAGGAAGCGTNGACTCGTCGTCGGGGGCAGCGGCTACCTGGGCCAGCACCTCC 60
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TCGCCGCGCTCGCTGCCGGCGGCGAGGTCGACGTCGCCTTCACCCACCACCGCGACACCC 120
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 CGCCGCAGCCGCTCCTGCACGCGCTCCCCGGGCTTCGCGCCTTCAGAGTAGACCTCCGCT 180
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 CCGGCGATGGCCTCCGCGCCGTCTCCGAGTCCTTCGGCCAGCCGCATGTGATTGTGAACT 240
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 GTGCTGCAATCTCGGTACCTCGGCAATGCGAAACGGATCCTGCTGCTGCTATGGCTACTA 300
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 ATGTACCTTCATCACTTGTCACTTGGTTGTTAAGCTTTGGGAATGACAACACTCTTCTTA 360
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TCCATCTCTCAACAGATCAAGTTTACGAGGGAGTAAAATCCTTCTACAAAGAGGATGATG 420
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AGACCTTGCCAGTGAACATGTACGGAAAATCTAAAGTTGCTGCAGAGAAGTTTATTATTG 480
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AACAATGCTCAAACTATGCAATCTTGAGAAGCAGTATTATTTATGGGCCACAAACAATTT 540
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 CTCCTGTGGCAAAATCTCTTCCAATTCAGTGGATGGATAGTGTTCTTTCACAAGGCCAAC 600
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AAGTTCAATTCTTTAATGATGAGTTCCGGTGTCCTGTTTATGTAAAAGATATGGTGGATG 660
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TAGTGTTGTCTTTGACAAAATCATGGTTAGCAGATGGTAAAGCTGTTCAAGTACTCCTGA 720
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 ATGTCGGTGGACCAGATAGAGTCTCAAGACTGCAGATGGCTGAATCTGTTGCTGATGTTC 780
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 GTGGATATAGTCATTCTATAATCAAATCTGTATCTGCTTCATCGGTTGACCGGGGTGTAG 840
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 CTTCTCCACCAGACATATCCATGGATATCACCAAACTAACCCAAATGCTTGGTATCAAGC 900
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 CAATTTCATTTCAAGATGGAGTCAGAGCTACACTTGCTGCAGAAGCTAGTACATGACACT 960
consensus_7683#1 -----------------------------------GCTGCAGAAGCTAGTACATGACACT 25
*************************
consensus_7683#0 TTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAA 1020
consensus_7683#1 TTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAA 85
************************************************************
consensus_7683#0 AGAGCCACTTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGT 1080
consensus_7683#1 AGAGCCACTTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGT 145
************************************************************
consensus_7683#0 AACTTTTCGACGGTGTGAAAAAGGAAATTTTGCGTTCACCCGACATCAATATCATGTATT 1140
consensus_7683#1 AACTTTTCGACGGTGTGAAAAAGGAAATTTTGCGTTCACCCGACATCAAAAAAAAAAAAA 205
************************************************* * * *
consensus_7683#0 ACTGTCTGGTTTTATACTTCCGAATAAAATCATCAAAAAAAAAAAA 1186
consensus_7683#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT- 250
* * * ** **** * **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||