These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 821 fasta sequence [TCATGCATCTTTATAGTTTCGATTAAACTCATTTCGACTAACAAAATTTGTACGTTCCAAACAAGATTTACATTTAC-AAAAAAAGATTTCCTACTTGCACTG-TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTGAGCAGTTAGGAATGAAATCTTTCTTTCTCAGCAGAACAAGCAAGT-GGGCTCTAAGAACTAGACCAAATAAGACAGGAGAATCTGAAAATGGTGGCTCATCAA] [+] EMBL CB629203 [TCATGCATCTTTATAGTTTCGATTAAACTCATTTCGACTAACAAAATTTGTACGTTCCAAACAAGATTTACATTTACAAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTGTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTGAGCAGTTAGGAATGAAATCTTTCTTTCTCAGCAGAACAAGCAAGT GGGCTCTAAGAACTAGACCAAATAAGACAGGAGAATCTGAAAATGGTGGCTCATCAA] [+] EMBL CB673647 [ TAGTTTCGATTAAACTCATCTCGACTAACAAAATTTGTACGTTCCAAACAAGATTTACATTTAC AAAAAAAGATTTCCTACTTGCACTG TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAACTGAGCAGTTAGGAATGAA ] [+] EMBL CB670274 [ nCGACTAACAAAATTTGTACCCTTTAAAGAAGATTTACATTTAC AAAAAAAGATTTCCTACTTGCACTG TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTGAGCAGTTAGGAATGAAATCTTTCTTTCTCAGCAGAACAAGCAAGTGGGGCTCTAAGAACTAGACC ] [+] EMBL CB677854 [ TTTAC AAAAAAAGACCCCTTAATTGCACTG TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAACAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTACTCTTGAAGAGGAAAGGATGAACACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCCACAACAGGCGCTCTCTTATACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAtc ] consensusID : consensus_7693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TTTTTTTTTTTTTTTTACAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGGGGTCTTCATCATATAAGATTATACTGGGCAGCTCCCAGCATCAAGATGGAATTTGCAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATACATGCTCAGGCATGAGGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTGAATTTCCTCTATTCTGGCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAACATCCANGGCTGAAACTGAACAGCTAGGAAATGAAATTTTTTTTTTC] [+] EMBL CA762406 [TTTTTTTTTTTTTTTTACAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGGGGTCTTCATCATATAAGATTATACTGGGCAGCTCCCAGCATCAAGATGGAATTTGCAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATACATGCTCAGGCATGAGGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTGAATTTCCTCTATTCTGGCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAACATCCANGGCTGAAACTGAACAGCTAGGAAATGAAATTTTTTTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7693#0 TCATGCATCTTTATAGTTTCGATTAAACTCATTTCGACTAACAAAATTTGTACGTTCCAA 60 consensus_7693#1 -----------------------------------------------------------T 1 consensus_7693#0 ACAAGATTTACATTTACAAAAAAAGATTTCCTACTTGCACTGT-CCATTGTAGCTTGAAC 119 consensus_7693#1 TTTTTTTTTTTTTTTACAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAAC 61 *** ******************************* **************** consensus_7693#0 ATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGC 179 consensus_7693#1 ATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGC 121 ************************************************************ consensus_7693#0 AGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTC 239 consensus_7693#1 AGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGGGGTCTTC 181 **** *********************************************** ******* consensus_7693#0 ATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGC 299 consensus_7693#1 ATCATATAAGATTATACTGGGCAGCTCCCAGCATCAAGATGGAATTTGCAGCAGCAGTGC 241 ******************* *************************** ************ consensus_7693#0 ATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTG 359 consensus_7693#1 ATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTG 301 ************************************* ********************** consensus_7693#0 ACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATA 419 consensus_7693#1 ACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATA 361 ************************************************************ consensus_7693#0 TATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACG 479 consensus_7693#1 CATGCTCAGGCATGAGGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACG 421 ************** ******************************************** consensus_7693#0 ATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAG 539 consensus_7693#1 ATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAG 481 **** ******************************************************* consensus_7693#0 CCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTA 599 consensus_7693#1 CCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTA 541 ************************************************************ consensus_7693#0 CGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTG 659 consensus_7693#1 CGAACATTTCCAGTTCTTCTGCACTGAATTGAATTTCCTCTATTCTGGCATGCTTTCCTG 601 ****************************** *************** ************ consensus_7693#0 AGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTG 719 consensus_7693#1 AGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAACATCCANGGCTGAAACTG 661 ***************************************** ****** ****** *** consensus_7693#0 AGCAGTTAGGAA-TGAAATCTTTCTTTCTCAGCAGAACAAGCAAGTGGGCTCTAAGAACT 778 consensus_7693#1 AACAGCTAGGAAATGAAATTTTTTTTTTC------------------------------- 690 * *** ****** ****** *** *** consensus_7693#0 AGACCAAATAAGACAGGAGAATCTGAAAATGGTGGCTCATCAA 821 consensus_7693#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||