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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_77#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence
[TGACCACGAGCACGAGCGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGGATCTGCCACCGTCGAGCCGCGGGGAGGGCAGATCCGCCGCTGCCGGGCCGCGGGAAGGGCGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCACCGGTACGTCCGTCTCCTCCTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGAGCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCATGGGGAGGGCGGATCCATCACCGTTGGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATGCCAATATTATGT]
[+] EMBL AK105356 [TGACCACGAGCACGAGCGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGGATCTGCCACCGTCGAGCCGCGGGGAGGGCAGATCCGCCGCTGCCGGGCCGCGGGAAGGGCGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCACCGGTACGTCCGTCTCCTCCTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGAGCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCATGGGGAGGGCGGATCCATCACCGTTGGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATGCCAATATTATGT]
consensusID : consensus_77#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGCCGAGCTGAGCTGAGCAAAACGCCACTCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAACCACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTCCGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGCGGCGCCGACGGTGGCGTCCCCCTCCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGGAGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGGTGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCGGCGGAGGTCGCCGGGGAAGGGGTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTCGCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGGCCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAACTGGATGTGATTATCTGCTGATGACTCTGTGGGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT]
[+] EMBL AK061607 [ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGCCGAGCTGAGCTGAGCAAAACGCCACTCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAACCACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTCCGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGCGGCGCCGACGGTGGCGTCCCCCTCCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGGAGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGGTGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCGGCGGAGGTCGCCGGGGAAGGGGTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTCGCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGGCCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAACTGGATGTGATTATCTGCTGATGACTCTGTGGGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_77#0 -TGACCACGAGCACGAG--CGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGG-AT 56
consensus_77#1 ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGC-CGAGCTGAGCTGAGCAAAACGCCAC 59
** **** **** ** ** ** **** ** ** * * * * ** *
consensus_77#0 CTGCCACCGTCGA-GCCGCGGGGAGGGCAG--ATCCGCCGCTGCCGGGCCGCGGGAAGGG 113
consensus_77#1 TCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAA--C 117
***** * * * * * * ** * ** * * *** ****** **
consensus_77#0 CGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCAC-CGGTACGTCCGTCTCCT 172
consensus_77#1 CACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTC 177
* ** *** * * * ** ** * * ** ** ** **** ** *** * *
consensus_77#0 C-CTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGA 231
consensus_77#1 CGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGC-GGCGCCGACGGTGGCGTCCCCCT 236
* * * * *** * ** * * * * ** * *** * ** * ** *
consensus_77#0 GCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCA----TGGGGAGGGCGG 287
consensus_77#1 CCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGG 296
* * * * * * * *** * ** * * * *** * ******
consensus_77#0 ATCCATCACCGTTGG--GCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGG----GAGGG 341
consensus_77#1 AGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGG 356
* * ** ** ** * * ** ** *** * ** ** * *** * **
consensus_77#0 CGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGC 401
consensus_77#1 TGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCG-GCGGAGGTCGCCGGGGAAGGG 415
* * * ** * ** * * ** * * ** * *
consensus_77#0 GTGC---CCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTC-CTGCTCCTGTC 457
consensus_77#1 GTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTC 475
**** * *** ** * * *** * * * **** * * * ***
consensus_77#0 CGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGA-GGCATCCTGAGG 516
consensus_77#1 GCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGG 535
** * ** * *** * * ** ** *** ** * * ************
consensus_77#0 CATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGC 576
consensus_77#1 CCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCC 595
* ***************** ** ************** * * * *** ** *
consensus_77#0 TTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTT 636
consensus_77#1 ATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAAC----TGGATGTGATTATCTGCTGAT 651
* * * * * *** ** ** * ** ****** ** ** *
consensus_77#0 AA-TCTGTTTATGTG--TTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATG 693
consensus_77#1 GACTCTGTGGGTGTAAATTAATTGTCATAG-AGTGATGGATCATGGTGGT---------- 700
* ***** *** ** * * ** * ** ** ** ** *
consensus_77#0 CCAATATTATGT 705
consensus_77#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||